Rh2AG153000

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011198
Physical Location & Seq
Forward (+)
14081417 .. 14085368
3952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG153000.1

Sequence Viewer

Length: 927 bp
ATGCCAACTGCTATACTACCCAAGGTGAACAGTACTATACATTCTGGTTTCTGGAGAGTGATAAGCCAAAGCGGGATACGAAATTCCAAAAATTTAGTACCTTGTCAGGGGAAATTGTTGTCTCAAAACTCGGGGTTGGCGCGTTCTCTACCGTGTTCGACCCTTTTGGTACCGAACACTAGTAGATATAGTTTTGGTTCTTTAAACCAGGGAAAATCTATGGCAGCTTCAAGTTCGAAACCTGTGTTTGGAGGAGATCTTTATGTTGATGACTTAATTGCAAGTAGTGGGAATGGATTAGACTTCACAAAACCGGCTGGTGTGTTTTTTAATGATAGAAGTCGTAGCAGCTTCCTGAAAGCTAGCTTGAGTTTGAGAAAAAAAGAATCGTTCAACGGTCGTCTAGTTTCTGTGCATGTTGGACCTTGGTTGAGAAATTTTCATGCCTCGTCTTCCATGTGCTATGCTGCTGGTGCTGCTCAGAATGTGTCAGTTGATGGCAACTCCAATGAAGAACAGCTTCCAAATTCTACTGTTTTGTCTGATCAACCTGTTTTGGGAGAGAGAACTCTGAAGCTACTTTCAGGATCATGTTACTTGCCACATCCTGAGAAGGAGGAGACAGGAGGAGAGGATGCCCACTTCATTTGTGAAAATGCACAGGTAATTGGTGTAGCAGATGGTGTGGGTGGATGGGCTGATGTTGGTGTTAATGCCGGACTATTTGCACGGGAACTTATGTCTCATTCTGTCAAGGCAATTCAAGAGGAGCCTATGGGTAGCTTTGAACCCGCCAGGGTGTTGGAGAAGGCCCACTCATGCACCAAAGCAAAGGGTTCTTCAACAGCTTGCATCATTGGCCTTACTGAGAAGGTTTGTTGTTATTCATTTGGACTGACCATCAGCGTCTATATAATTTACTGCTGA

Protein Analysis

308

Amino Acids

32.82

Weight (kDa)

8.29

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66720 AT5G66720
fragaria_vesca FvH4_1g13720 FvH4_1g13720
malus_domestica MD02G1151900.v1.1 MD15G1266300.v1.1
prunus_persica Prupe.7G151100_v2.0.a1
pyrus_communis pycom02g11930 pycom15g23180
rosa_chinensis RchiOBHm_Chr2g0102131
rosa_laevigata RLG00000017132
rosa_multiflora Rmu_co8315037.1_g000001 Rmu_sc0000157.1_g000039
rosa_roxburghii Rroxscaffold_2G00140760
rosa_rugosa Rorug02G0104600
rosa_samantha Rh2AG153000 Rh2BG158900 Rh2CG158200 Rh2DG158600
rosa_wichuraiana Rw2G011940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 169
AccII CGCG 1 cut(s) 142
AciI CCGC 2 cut(s) 72, 792
AclWI GGATC 1 cut(s) 595
AcsI RAATTY 4 cut(s) 82, 91, 436, 526
AcuI CTGAAG 1 cut(s) 593
AfaI GTAC 3 cut(s) 34, 99, 171
AfiI CCNNNNNNNGG 3 cut(s) 107, 248, 557
AgsI TTSAA 5 cut(s) 231, 394, 764, 788, 843
AhlI ACTAGT 1 cut(s) 179
AjnI CCWGG 2 cut(s) 207, 794
AluBI AGCT 8 cut(s) 227, 351, 362, 366, 520, 577, 783, 848
AluI AGCT 8 cut(s) 227, 351, 362, 366, 520, 577, 783, 848
Alw26I GTCTC 3 cut(s) 126, 614, 747
AlwI GGATC 1 cut(s) 595
Ama87I CYCGRG 1 cut(s) 130
AoxI GGCC 2 cut(s) 810, 859
ApeKI GCWGC 4 cut(s) 224, 348, 467, 476
ApoI RAATTY 4 cut(s) 82, 91, 436, 526
Asp700I GAANNNNTTC 1 cut(s) 519
Asp718I GGTACC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 422, 811
AsuHPI GGTGA 1 cut(s) 37
AsuII TTCGAA 1 cut(s) 236
AsuNHI GCTAGC 1 cut(s) 362
AvaI CYCGRG 1 cut(s) 130
AvaII GGWCC 1 cut(s) 422
BanI GGYRCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 444
BbvI GCAGC 4 cut(s) 236, 360, 454, 463
BccI CCATC 4 cut(s) 491, 674, 687, 908
BciT130I CCWGG 2 cut(s) 209, 796
BciVI GTATCC 1 cut(s) 69
BclI TGATCA 1 cut(s) 544
BcoDI GTCTC 3 cut(s) 126, 614, 747
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 3 cut(s) 180, 363, 404
BfuI GTATCC 1 cut(s) 69
BglII AGATCT 1 cut(s) 256
BisI GCNGC 4 cut(s) 225, 349, 468, 477
BlsI GCNGC 4 cut(s) 226, 350, 469, 478
BmcAI AGTACT 1 cut(s) 34
Bme1390I CCNGG 2 cut(s) 209, 796
Bme18I GGWCC 1 cut(s) 422
BmeT110I CYCGRG 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 422, 811
BmiI GGNNCC 2 cut(s) 171, 771
BmrFI CCNGG 2 cut(s) 209, 796
BmsI GCATC 2 cut(s) 625, 861
BmtI GCTAGC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 444
BpmI CTGGAG 1 cut(s) 73
Bpu14I TTCGAA 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 388
BsaJI CCNNGG 4 cut(s) 21, 208, 425, 795
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 248, 557
Bse118I RCCGGY 1 cut(s) 313
BseBI CCWGG 2 cut(s) 209, 796
BseDI CCNNGG 4 cut(s) 21, 208, 425, 795
BseGI GGATG 3 cut(s) 604, 640, 698
BseLI CCNNNNNNNGG 3 cut(s) 107, 248, 557
BseMII CTCAG 3 cut(s) 494, 600, 858
BseRI GAGGAG 4 cut(s) 267, 632, 642, 782
BseXI GCAGC 4 cut(s) 236, 360, 454, 463
Bsh1236I CGCG 1 cut(s) 142
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 2 cut(s) 812, 861
BshNI GGYRCC 1 cut(s) 169
BsiEI CGRYCG 1 cut(s) 400
BsiHKCI CYCGRG 1 cut(s) 130
BsiSI CCGG 2 cut(s) 314, 717
BslI CCNNNNNNNGG 3 cut(s) 107, 248, 557
BsmAI GTCTC 3 cut(s) 126, 614, 747
BsnI GGCC 2 cut(s) 812, 861
BsoBI CYCGRG 1 cut(s) 130
Bsp119I TTCGAA 1 cut(s) 236
Bsp143I GATC 3 cut(s) 256, 544, 587
BspACI CCGC 2 cut(s) 72, 792
BspANI GGCC 2 cut(s) 812, 861
BspCNI CTCAG 3 cut(s) 493, 601, 859
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 171, 771
BspOI GCTAGC 1 cut(s) 366
BspPI GGATC 1 cut(s) 595
BspT104I TTCGAA 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 4 cut(s) 21, 208, 425, 795
BssMI GATC 3 cut(s) 256, 544, 587
BssT1I CCWWGG 2 cut(s) 21, 425
Bst2UI CCWGG 2 cut(s) 209, 796
Bst4CI ACNGT 4 cut(s) 32, 153, 398, 535
BstBI TTCGAA 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 364, 850
BstDEI CTNAG 3 cut(s) 480, 609, 867
BstF5I GGATG 3 cut(s) 604, 640, 698
BstFNI CGCG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 3 cut(s) 259, 547, 590
BstMAI GTCTC 3 cut(s) 126, 614, 747
BstMBI GATC 3 cut(s) 256, 544, 587
BstMCI CGRYCG 1 cut(s) 400
BstMWI GCNNNNNNNGC 3 cut(s) 473, 476, 858
BstNI CCWGG 2 cut(s) 209, 796
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 2 cut(s) 207, 794
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 4 cut(s) 236, 360, 454, 463
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 802
BstYI RGATCY 1 cut(s) 256
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 2 cut(s) 812, 861
BtsCI GGATG 3 cut(s) 604, 640, 698
Cac8I GCNNGC 2 cut(s) 364, 850
CfoI GCGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 422, 811
CseI GACGC 1 cut(s) 895
Csp6I GTAC 3 cut(s) 33, 98, 170
CspCI CAANNNNNGTGG 2 cut(s) 629, 664
CviAII CATG 5 cut(s) 416, 443, 457, 591, 819
CviQI GTAC 3 cut(s) 33, 98, 170
DdeI CTNAG 3 cut(s) 480, 609, 867
DpnI GATC 3 cut(s) 258, 546, 589
DpnII GATC 3 cut(s) 256, 544, 587
DraI TTTAAA 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 21, 425
Eco47I GGWCC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 593
Eco88I CYCGRG 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 207, 794
EcoT14I CCWWGG 2 cut(s) 21, 425
ErhI CCWWGG 2 cut(s) 21, 425
FaeI CATG 5 cut(s) 419, 446, 460, 594, 822
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FatI CATG 5 cut(s) 415, 442, 456, 590, 818
FauI CCCGC 2 cut(s) 65, 799
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 4 cut(s) 225, 349, 468, 477
FokI GGATG 3 cut(s) 591, 647, 705
Fsp4HI GCNGC 4 cut(s) 225, 349, 468, 477
FspBI CTAG 3 cut(s) 180, 363, 404
GlaI GCGC 1 cut(s) 141
GluI GCNGC 4 cut(s) 225, 349, 468, 477
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 2 cut(s) 812, 861
HapII CCGG 2 cut(s) 314, 717
HgaI GACGC 1 cut(s) 895
HhaI GCGC 1 cut(s) 142
Hin1II CATG 5 cut(s) 419, 446, 460, 594, 822
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 1 cut(s) 386
HpaII CCGG 2 cut(s) 314, 717
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 483, 544, 573
Hpy188III TCNNGA 5 cut(s) 52, 355, 585, 608, 764
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 3 cut(s) 607, 802, 865
HpyCH4III ACNGT 4 cut(s) 32, 153, 398, 535
HpyCH4V TGCA 6 cut(s) 281, 415, 659, 728, 822, 852
HpyF10VI GCNNNNNNNGC 3 cut(s) 473, 476, 858
HpyF3I CTNAG 3 cut(s) 480, 609, 867
Hsp92II CATG 5 cut(s) 419, 446, 460, 594, 822
HspAI GCGC 1 cut(s) 140
KpnI GGTACC 1 cut(s) 173
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 3 cut(s) 256, 544, 587
LmnI GCTCC 1 cut(s) 769
Lsp1109I GCAGC 4 cut(s) 236, 360, 454, 463
LweI GCATC 2 cut(s) 625, 861
MaeI CTAG 3 cut(s) 180, 363, 404
MaeIII GTNAC 1 cut(s) 593
MalI GATC 3 cut(s) 258, 546, 589
MboI GATC 3 cut(s) 256, 544, 587
MboII GAAGA 3 cut(s) 444, 524, 831
MflI RGATCY 1 cut(s) 256
MluCI AATT 9 cut(s) 82, 91, 113, 276, 436, 526, 666, 759, 915
MmeI TCCRAC 2 cut(s) 400, 783
MnlI CCTC 6 cut(s) 245, 457, 610, 620, 625, 760
MroXI GAANNNNTTC 1 cut(s) 519
MseI TTAA 4 cut(s) 203, 275, 330, 711
MspI CCGG 2 cut(s) 314, 717
MspR9I CCNGG 2 cut(s) 209, 796
MvaI CCWGG 2 cut(s) 209, 796
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 3 cut(s) 473, 476, 858
NdeII GATC 3 cut(s) 256, 544, 587
NheI GCTAGC 1 cut(s) 362
NlaIII CATG 5 cut(s) 419, 446, 460, 594, 822
NlaIV GGNNCC 2 cut(s) 171, 771
NspI RCATGY 1 cut(s) 419
NspV TTCGAA 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 519
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 4 cut(s) 226, 350, 469, 478
Psp6I CCWGG 2 cut(s) 207, 794
PspGI CCWGG 2 cut(s) 207, 794
PspN4I GGNNCC 2 cut(s) 171, 771
PspPI GGNCC 2 cut(s) 422, 811
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 3 cut(s) 34, 99, 171
RsaNI GTAC 3 cut(s) 33, 98, 170
SaqAI TTAA 4 cut(s) 203, 275, 330, 711
SatI GCNGC 4 cut(s) 225, 349, 468, 477
Sau3AI GATC 3 cut(s) 256, 544, 587
Sau96I GGNCC 2 cut(s) 422, 811
ScaI AGTACT 1 cut(s) 34
ScrFI CCNGG 2 cut(s) 209, 796
SfaNI GCATC 2 cut(s) 625, 861
SfuI TTCGAA 1 cut(s) 236
SinI GGWCC 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 9 cut(s) 82, 91, 113, 276, 436, 526, 666, 759, 915
SsiI CCGC 2 cut(s) 72, 792
SspMI CTAG 3 cut(s) 180, 363, 404
StyD4I CCNGG 2 cut(s) 207, 794
StyI CCWWGG 2 cut(s) 21, 425
TaaI ACNGT 4 cut(s) 32, 153, 398, 535
TaqI TCGA 2 cut(s) 158, 236
TasI AATT 9 cut(s) 82, 91, 113, 276, 436, 526, 666, 759, 915
TatI WGTACW 1 cut(s) 32
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 4 cut(s) 203, 275, 330, 711
Tru9I TTAA 4 cut(s) 203, 275, 330, 711
TseI GCWGC 4 cut(s) 224, 348, 467, 476
TspDTI ATGAA 4 cut(s) 431, 525, 634, 876
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 4 cut(s) 82, 91, 436, 526
XceI RCATGY 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 519
XspI CTAG 3 cut(s) 180, 363, 404
ZrmI AGTACT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.