FvH4_1g13720

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011198
Physical Location & Seq
Forward (+)
7563634 .. 7567296
3663 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13720.t2

Sequence Viewer

Length: 1320 bp
ATGCCAGCTGCTATATTCCCCAAAGTAAACAGTACTATACAGTCTGGTTTGTGGAGAGTTATAAGCCAGAGTGGGATACGAAATTCGAAAACTTTAGTGCCTTGTGAGGGGAAATTGTTTTCTCAGAACTCAGGGTTGGTGCGTTCTCTACCGTGTTCAACCCTTTTGGTATCGGGCAGTAGCAGGTATAGTTTTGGTTCTTTACACCAGGGAAAATCTATGGCTGCTTCAAGTTCGAAACCTGTGTTTGGAGGAGATCTTTATGTTGATGACTTAATTGGGAGTACTGGGAATGGATTGGACTTCACAAAACCGACTGGGGTCTTTTTTAATGATAGAAGTCGTAGCAGTTTCCTGAAAACTAGCTTGAGCTTGAGAAGAAAAAAATCGTTCAACAGTCGTTTAGCATCTGTGCATGTTGGACCTTGGTCAAGAAATTTTCATGCATCAGCTTCCAATTACCATGCTGCTGGTGCTGCTCAGAATGTGTCACTTGATGGCAACTCCAATGAAGAACAGCTTGCAAATTCTACTGTTTTGTCTGATCAACCTGTTTTGGGAGAGAGAACTCTGAAGCTACTTTCAGGATCATGTTACTTACCACATCCTGAGAAGGAAGAGACAGGAGGAGAGGATGCCCACTTCATATGTGAAGATGCACAGGCAATCGGTGTAGCAGATGGTGTGGGTGGATGGGCTGATGTTGGTGTTAATGCCGGCCTATTTGCTCGTGAACTTATGGCTCATTCTCTTAAGGCAATTCAAGAGGAGCCTATGGGTAGCTTTGAACCTGCCAGGGTGTTAGAGAAGGCACACTCATGCACCAAAGCAAAGGGTTCTTCAACAGCTTGCATCATTGGCCTTACTGAGAAGGGCTTACATGCTATCAATCTTGGGGACAGTGGATTCATAGTGGTTAGAGATGGAAGCACCATCTTCCGATCCCCTGTTCAGCAGCATGGCTTCAATTTTACGTATCAGCTGGAAAGTGGCAGTGGGGCTGATCTACCAAGCTCCGGTGAGGTGTTTTTGATTCCTGTCGCCGCAGGGGATGTCATCATTGCCGGGACAGATGGGTTGTTTGACAACTTGTATAATACTGAGGTTACTGCGATTGTTGTTCATGCTGTGAGAACCGGCTTGGAACCGCAAGCAACTGCTAAGAAAATAGCAGCTTTAGCACGCACACGAGCACTGGATAAGAACAGGCAAACACCATTTTCCACTGCTGCTCAAGATGCAGGGTTCCGTTATTATGGAGGCAAGCTTGATGATGTTACTGTTGTTGTGTCCTACATAACTAGCTCCATCAAGGTGTGA

Protein Analysis

440

Amino Acids

46.53

Weight (kDa)

7.67

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66720 AT5G66720
fragaria_vesca FvH4_1g13720 FvH4_1g13720
malus_domestica MD02G1151900.v1.1 MD15G1266300.v1.1
prunus_persica Prupe.7G151100_v2.0.a1
pyrus_communis pycom02g11930 pycom15g23180
rosa_chinensis RchiOBHm_Chr2g0102131
rosa_laevigata RLG00000017132
rosa_multiflora Rmu_co8315037.1_g000001 Rmu_sc0000157.1_g000039
rosa_roxburghii Rroxscaffold_2G00140760
rosa_rugosa Rorug02G0104600
rosa_samantha Rh2AG153000 Rh2BG158900 Rh2CG158200 Rh2DG158600
rosa_wichuraiana Rw2G011940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 62
Acc36I ACCTGC 2 cut(s) 174, 799
AciI CCGC 2 cut(s) 1044, 1148
AclWI GGATC 2 cut(s) 595, 936
AcsI RAATTY 3 cut(s) 82, 436, 526
AcuI CTGAAG 1 cut(s) 593
AfaI GTAC 2 cut(s) 34, 286
AfiI CCNNNNNNNGG 4 cut(s) 107, 248, 557, 1016
AflII CTTAAG 1 cut(s) 752
AgsI TTSAA 7 cut(s) 159, 231, 394, 764, 788, 843, 967
AjnI CCWGG 2 cut(s) 207, 794
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
Alw21I GWGCWC 1 cut(s) 1195
Alw26I GTCTC 1 cut(s) 614
AlwI GGATC 2 cut(s) 595, 936
AoxI GGCC 2 cut(s) 718, 859
ApeKI GCWGC 7 cut(s) 8, 224, 467, 476, 955, 1172, 1229
ApoI RAATTY 3 cut(s) 82, 436, 526
AspS9I GGNCC 1 cut(s) 422
AsuC2I CCSGG 1 cut(s) 1066
AsuHPI GGTGA 1 cut(s) 1031
AsuII TTCGAA 2 cut(s) 86, 236
AvaII GGWCC 1 cut(s) 422
BauI CACGAG 2 cut(s) 729, 1188
Bbv12I GWGCWC 1 cut(s) 1195
BbvI GCAGC 6 cut(s) 211, 454, 463, 967, 1184, 1216
BccI CCATC 7 cut(s) 491, 674, 687, 917, 941, 1067, 1316
BciT130I CCWGG 2 cut(s) 209, 796
BciVI GTATCC 1 cut(s) 69
BclI TGATCA 1 cut(s) 544
BcnI CCSGG 1 cut(s) 1066
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 2 cut(s) 363, 1302
BfrI CTTAAG 1 cut(s) 752
BfuAI ACCTGC 2 cut(s) 174, 799
BfuI GTATCC 1 cut(s) 69
BglII AGATCT 1 cut(s) 256
BisI GCNGC 8 cut(s) 9, 225, 468, 477, 956, 1044, 1173, 1230
BlsI GCNGC 8 cut(s) 10, 226, 469, 478, 957, 1045, 1174, 1231
BmcAI AGTACT 2 cut(s) 34, 286
Bme1390I CCNGG 3 cut(s) 209, 796, 1066
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 3 cut(s) 771, 1146, 1247
BmrFI CCNGG 3 cut(s) 209, 796, 1066
BmrI ACTGGG 2 cut(s) 297, 327
BmsI GCATC 6 cut(s) 416, 455, 625, 646, 861, 1228
BmuI ACTGGG 2 cut(s) 297, 327
BoxI GACNNNNGTC 2 cut(s) 320, 427
Bpu14I TTCGAA 2 cut(s) 86, 236
BpuEI CTTGAG 3 cut(s) 388, 394, 1218
BpuMI CCSGG 1 cut(s) 1066
BsaAI YACGTR 1 cut(s) 975
BsaJI CCNNGG 3 cut(s) 208, 425, 795
BsaWI WCCGGW 1 cut(s) 1016
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 248, 557, 1016
Bse118I RCCGGY 2 cut(s) 716, 1136
Bse1I ACTGG 3 cut(s) 292, 322, 1200
Bse3DI GCAATG 1 cut(s) 1059
BseBI CCWGG 2 cut(s) 209, 796
BseDI CCNNGG 3 cut(s) 208, 425, 795
BseGI GGATG 4 cut(s) 604, 640, 698, 1057
BseLI CCNNNNNNNGG 4 cut(s) 107, 248, 557, 1016
BseMI GCAATG 1 cut(s) 1059
BseMII CTCAG 6 cut(s) 137, 144, 494, 600, 858, 1092
BseNI ACTGG 3 cut(s) 292, 322, 1200
BseRI GAGGAG 3 cut(s) 267, 642, 782
BseXI GCAGC 6 cut(s) 211, 454, 463, 967, 1184, 1216
BshFI GGCC 2 cut(s) 720, 861
BsiHKAI GWGCWC 1 cut(s) 1195
BsiSI CCGG 4 cut(s) 717, 1017, 1065, 1137
BslFI GGGAC 2 cut(s) 911, 1081
BslI CCNNNNNNNGG 4 cut(s) 107, 248, 557, 1016
BsmAI GTCTC 1 cut(s) 614
BsmFI GGGAC 2 cut(s) 911, 1081
BsnI GGCC 2 cut(s) 720, 861
Bsp119I TTCGAA 2 cut(s) 86, 236
Bsp1286I GDGCHC 1 cut(s) 1195
Bsp143I GATC 5 cut(s) 256, 544, 587, 941, 1003
BspACI CCGC 2 cut(s) 1044, 1148
BspANI GGCC 2 cut(s) 720, 861
BspCNI CTCAG 6 cut(s) 136, 143, 493, 601, 859, 1093
BspLI GGNNCC 3 cut(s) 771, 1146, 1247
BspMI ACCTGC 2 cut(s) 174, 799
BspPI GGATC 2 cut(s) 595, 936
BspT104I TTCGAA 2 cut(s) 86, 236
BspTI CTTAAG 1 cut(s) 752
BsrDI GCAATG 1 cut(s) 1059
BsrFI RCCGGY 2 cut(s) 716, 1136
BsrI ACTGG 3 cut(s) 292, 322, 1200
BssAI RCCGGY 2 cut(s) 716, 1136
BssECI CCNNGG 3 cut(s) 208, 425, 795
BssMI GATC 5 cut(s) 256, 544, 587, 941, 1003
BssSI CACGAG 2 cut(s) 729, 1188
BssT1I CCWWGG 1 cut(s) 425
Bst2BI CACGAG 2 cut(s) 729, 1188
Bst2UI CCWGG 2 cut(s) 209, 796
Bst4CI ACNGT 7 cut(s) 32, 42, 153, 398, 535, 902, 1282
Bst6I CTCTTC 1 cut(s) 612
BstAFI CTTAAG 1 cut(s) 752
BstBAI YACGTR 1 cut(s) 975
BstBI TTCGAA 2 cut(s) 86, 236
BstC8I GCNNGC 7 cut(s) 6, 522, 718, 850, 1152, 1183, 1265
BstDEI CTNAG 7 cut(s) 123, 130, 480, 609, 867, 1101, 1161
BstF5I GGATG 4 cut(s) 604, 640, 698, 1057
BstKTI GATC 5 cut(s) 259, 547, 590, 944, 1006
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 5 cut(s) 256, 544, 587, 941, 1003
BstMWI GCNNNNNNNGC 5 cut(s) 473, 476, 858, 1178, 1238
BstNI CCWGG 2 cut(s) 209, 796
BstNSI RCATGY 2 cut(s) 419, 884
BstPAI GACNNNNGTC 2 cut(s) 320, 427
BstSCI CCNGG 3 cut(s) 207, 794, 1064
BstSNI TACGTA 1 cut(s) 975
BstV1I GCAGC 6 cut(s) 211, 454, 463, 967, 1184, 1216
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 1 cut(s) 256
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 2 cut(s) 720, 861
BtsCI GGATG 4 cut(s) 604, 640, 698, 1057
BtsI GCAGTG 2 cut(s) 1000, 1224
BtsIMutI CAGTG 4 cut(s) 907, 1000, 1193, 1224
BveI ACCTGC 2 cut(s) 174, 799
Cac8I GCNNGC 7 cut(s) 6, 522, 718, 850, 1152, 1183, 1265
Cfr10I RCCGGY 2 cut(s) 716, 1136
Cfr13I GGNCC 1 cut(s) 422
Csp6I GTAC 2 cut(s) 33, 285
CviAII CATG 8 cut(s) 416, 443, 464, 591, 819, 881, 959, 1124
CviQI GTAC 2 cut(s) 33, 285
DdeI CTNAG 7 cut(s) 123, 130, 480, 609, 867, 1101, 1161
DpnI GATC 5 cut(s) 258, 546, 589, 943, 1005
DpnII GATC 5 cut(s) 256, 544, 587, 941, 1003
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco105I TACGTA 1 cut(s) 975
Eco130I CCWWGG 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 593
EcoRII CCWGG 2 cut(s) 207, 794
EcoT14I CCWWGG 1 cut(s) 425
EcoT22I ATGCAT 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 8 cut(s) 419, 446, 467, 594, 822, 884, 962, 1127
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FaqI GGGAC 2 cut(s) 911, 1081
FatI CATG 8 cut(s) 415, 442, 463, 590, 818, 880, 958, 1123
FauNDI CATATG 1 cut(s) 647
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 8 cut(s) 9, 225, 468, 477, 956, 1044, 1173, 1230
FokI GGATG 4 cut(s) 591, 647, 705, 1064
Fsp4HI GCNGC 8 cut(s) 9, 225, 468, 477, 956, 1044, 1173, 1230
FspBI CTAG 2 cut(s) 363, 1302
GluI GCNGC 8 cut(s) 9, 225, 468, 477, 956, 1044, 1173, 1230
HaeIII GGCC 2 cut(s) 720, 861
HapII CCGG 4 cut(s) 717, 1017, 1065, 1137
Hin1II CATG 8 cut(s) 419, 446, 467, 594, 822, 884, 962, 1127
HindIII AAGCTT 1 cut(s) 1265
HinfI GANTC 2 cut(s) 906, 1033
HpaII CCGG 4 cut(s) 717, 1017, 1065, 1137
HphI GGTGA 1 cut(s) 1031
Hpy166II GTNNAC 2 cut(s) 28, 734
Hpy188I TCNGA 5 cut(s) 126, 483, 544, 573, 941
Hpy188III TCNNGA 7 cut(s) 355, 432, 585, 608, 731, 764, 1235
Hpy8I GTNNAC 2 cut(s) 28, 734
HpyAV CCTTC 3 cut(s) 607, 802, 865
HpyCH4III ACNGT 7 cut(s) 32, 42, 153, 398, 535, 902, 1282
HpyCH4IV ACGT 1 cut(s) 974
HpyCH4V TGCA 7 cut(s) 415, 446, 524, 659, 822, 852, 1241
HpyF10VI GCNNNNNNNGC 5 cut(s) 473, 476, 858, 1178, 1238
HpyF3I CTNAG 7 cut(s) 123, 130, 480, 609, 867, 1101, 1161
HpySE526I ACGT 1 cut(s) 974
Hsp92II CATG 8 cut(s) 419, 446, 467, 594, 822, 884, 962, 1127
KroI GCCGGC 1 cut(s) 716
KroNI GCCGGC 1 cut(s) 718
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 5 cut(s) 256, 544, 587, 941, 1003
LmnI GCTCC 3 cut(s) 769, 1019, 1310
Lsp1109I GCAGC 6 cut(s) 211, 454, 463, 967, 1184, 1216
LweI GCATC 6 cut(s) 416, 455, 625, 646, 861, 1228
MaeI CTAG 2 cut(s) 363, 1302
MaeII ACGT 1 cut(s) 974
MaeIII GTNAC 4 cut(s) 489, 593, 1105, 1276
MalI GATC 5 cut(s) 258, 546, 589, 943, 1005
MboI GATC 5 cut(s) 256, 544, 587, 941, 1003
MboII GAAGA 6 cut(s) 390, 524, 629, 665, 831, 928
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 1195
MluCI AATT 8 cut(s) 82, 113, 276, 436, 457, 526, 759, 967
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 8 cut(s) 100, 245, 620, 625, 760, 1015, 1096, 1253
Mph1103I ATGCAT 1 cut(s) 448
MroNI GCCGGC 1 cut(s) 716
MseI TTAA 4 cut(s) 275, 330, 711, 753
MslI CAYNNNNRTG 2 cut(s) 817, 1313
MspA1I CMGCKG 2 cut(s) 8, 982
MspCI CTTAAG 1 cut(s) 752
MspI CCGG 4 cut(s) 717, 1017, 1065, 1137
MspR9I CCNGG 3 cut(s) 209, 796, 1066
MvaI CCWGG 2 cut(s) 209, 796
MwoI GCNNNNNNNGC 5 cut(s) 473, 476, 858, 1178, 1238
NaeI GCCGGC 1 cut(s) 718
NciI CCSGG 1 cut(s) 1066
NdeI CATATG 1 cut(s) 647
NdeII GATC 5 cut(s) 256, 544, 587, 941, 1003
NgoMIV GCCGGC 1 cut(s) 716
NlaIII CATG 8 cut(s) 419, 446, 467, 594, 822, 884, 962, 1127
NlaIV GGNNCC 3 cut(s) 771, 1146, 1247
NmuCI GTSAC 1 cut(s) 489
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 2 cut(s) 419, 884
NspV TTCGAA 2 cut(s) 86, 236
PdiI GCCGGC 1 cut(s) 718
PfeI GAWTC 2 cut(s) 906, 1033
PkrI GCNGC 8 cut(s) 10, 226, 469, 478, 957, 1045, 1174, 1231
Ppu21I YACGTR 1 cut(s) 975
PshAI GACNNNNGTC 2 cut(s) 320, 427
PsiI TTATAA 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 207, 794
PspGI CCWGG 2 cut(s) 207, 794
PspN4I GGNNCC 3 cut(s) 771, 1146, 1247
PspPI GGNCC 1 cut(s) 422
PsuI RGATCY 1 cut(s) 256
PvuII CAGCTG 2 cut(s) 8, 982
RsaI GTAC 2 cut(s) 34, 286
RsaNI GTAC 2 cut(s) 33, 285
RseI CAYNNNNRTG 2 cut(s) 817, 1313
SaqAI TTAA 4 cut(s) 275, 330, 711, 753
SatI GCNGC 8 cut(s) 9, 225, 468, 477, 956, 1044, 1173, 1230
Sau3AI GATC 5 cut(s) 256, 544, 587, 941, 1003
Sau96I GGNCC 1 cut(s) 422
ScaI AGTACT 2 cut(s) 34, 286
ScrFI CCNGG 3 cut(s) 209, 796, 1066
SduI GDGCHC 1 cut(s) 1195
SfaNI GCATC 6 cut(s) 416, 455, 625, 646, 861, 1228
SfuI TTCGAA 2 cut(s) 86, 236
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 2 cut(s) 817, 1313
SmlI CTYRAG 4 cut(s) 367, 373, 752, 1233
SmoI CTYRAG 4 cut(s) 367, 373, 752, 1233
SnaBI TACGTA 1 cut(s) 975
Sse9I AATT 8 cut(s) 82, 113, 276, 436, 457, 526, 759, 967
SsiI CCGC 2 cut(s) 1044, 1148
SspMI CTAG 2 cut(s) 363, 1302
StyD4I CCNGG 3 cut(s) 207, 794, 1064
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 7 cut(s) 32, 42, 153, 398, 535, 902, 1282
TaiI ACGT 1 cut(s) 977
TaqI TCGA 2 cut(s) 86, 236
TasI AATT 8 cut(s) 82, 113, 276, 436, 457, 526, 759, 967
TatI WGTACW 2 cut(s) 32, 284
TauI GCSGC 1 cut(s) 1046
TfiI GAWTC 2 cut(s) 906, 1033
Tru1I TTAA 4 cut(s) 275, 330, 711, 753
Tru9I TTAA 4 cut(s) 275, 330, 711, 753
TscAI CASTG 4 cut(s) 907, 1000, 1200, 1231
TseFI GTSAC 1 cut(s) 489
TseI GCWGC 7 cut(s) 8, 224, 467, 476, 955, 1172, 1229
Tsp45I GTSAC 1 cut(s) 489
TspDTI ATGAA 5 cut(s) 431, 525, 634, 898, 1112
TspGWI ACGGA 1 cut(s) 1238
TspRI CASTG 4 cut(s) 907, 1000, 1200, 1231
Vha464I CTTAAG 1 cut(s) 752
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 3 cut(s) 82, 436, 526
XceI RCATGY 2 cut(s) 419, 884
XspI CTAG 2 cut(s) 363, 1302
ZrmI AGTACT 2 cut(s) 34, 286
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.