Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011198

Physical Location & Seq

Genomic Coordinates Forward (+)

13810581 .. 13814329

Gene Structure 3749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG158200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCCAACTGCTATACTACCCAAGGTGAACAGTACTATACATTCTGGTTTCTGGAGAGTGATAAGCCAAAGCGGGATACGAAATTCGAAAAGTTTAGTACCTTGTCAGGGGAAATTGTTGTCTCAAAACTCAGGGTTGGCGCGTTCTCTACCGTGTTCGACCCTTTTGGTACCGAACACTAGTAGATATAGTTTTGGTTCTTTAAACCAGGGAAAAGCTATGGCAGCTTCAAGTTCGAAACCTGTGTTTGGAGGAGATCTTTATGTTGATGACTTAATTGCAAGTAGTGGGAATGGCTTAGACTTCACAAAACCGGCTGGTGTGTTTTTTAATGATAGAAGTCGTAGCAGCTTCCTGAAAGCTAGCTTGAGTTTGAGAAGAAAAGAATCGTTCAACGGTCGTCTAGTTTCTGTGCATGTTGGACCTTGGTTGAGAAATTTTCATGCCTCGTCTTCCATGTGCTATGCTGCTGGTGCTGCTCAGAATGTGTCAGTTGATGGCAACTCCAATGAAGAACAGCTTGCAAATTCTACTGTTTTGTCTGATCAACCTGTTTTGGGAGAGAGAACTCTGAAGCTACTTTCAGGATCATGTTACTTGCCACATCCTGAGAAGGAGGAGACAGGAGGAGAGGATGCCCACTTCGTTTGTGAAGATGCACAGGCAATTGGTGTAGCAGATGGTGTGGGTGGATGGGCTGATGTTGGTGTTAATGCTGGACTATTTGCACGGGAACTTATGTCTCATTCTGTTAAGGCAATTCAAGAGGAGCCTAAGGGTAGCTTTGAACCCGCCAGGGTGTTGGAGAAGGCCCACTCATGCACCAAAGCAAAGGGTTCTTCAACAGCTTGCATCATTGGCCTTACTGAGAAGGTTTGTTTGTTATTCATTTGGACTGACCATCAGCGCCTATATAATTTACTGCTGAAATGCTTGTTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C_2 SpoIIE

Protein Analysis

314

Amino Acids

33.66

Weight (kDa)

8.54

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66720 AT5G66720
fragaria_vesca	FvH4_1g13720 FvH4_1g13720
malus_domestica	MD02G1151900.v1.1 MD15G1266300.v1.1
prunus_persica	Prupe.7G151100_v2.0.a1
pyrus_communis	pycom02g11930 pycom15g23180
rosa_chinensis	RchiOBHm_Chr2g0102131
rosa_laevigata	RLG00000017132
rosa_multiflora	Rmu_co8315037.1_g000001 Rmu_sc0000157.1_g000039
rosa_roxburghii	Rroxscaffold_2G00140760
rosa_rugosa	Rorug02G0104600
rosa_samantha	Rh2AG153000 Rh2BG158900 Rh2CG158200 Rh2DG158600
rosa_wichuraiana	Rw2G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	169
AccB1I	GGYRCC	1 cut(s)	169
AccII	CGCG	1 cut(s)	142
AciI	CCGC	2 cut(s)	72, 792
AclWI	GGATC	1 cut(s)	595
AcsI	RAATTY	3 cut(s)	82, 436, 526
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	3 cut(s)	34, 99, 171
AfiI	CCNNNNNNNGG	3 cut(s)	107, 248, 557
AgsI	TTSAA	5 cut(s)	231, 394, 764, 788, 843
AhlI	ACTAGT	1 cut(s)	179
AjnI	CCWGG	2 cut(s)	207, 794
AluBI	AGCT	9 cut(s)	218, 227, 351, 362, 366, 520, 577, 783, 848
AluI	AGCT	9 cut(s)	218, 227, 351, 362, 366, 520, 577, 783, 848
Alw26I	GTCTC	3 cut(s)	126, 614, 747
AlwI	GGATC	1 cut(s)	595
AoxI	GGCC	2 cut(s)	810, 859
ApeKI	GCWGC	4 cut(s)	224, 348, 467, 476
ApoI	RAATTY	3 cut(s)	82, 436, 526
Asp718I	GGTACC	1 cut(s)	169
AspLEI	GCGC	2 cut(s)	142, 909
AspS9I	GGNCC	2 cut(s)	422, 811
AsuHPI	GGTGA	1 cut(s)	37
AsuII	TTCGAA	2 cut(s)	86, 236
AsuNHI	GCTAGC	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	422
AxyI	CCTNAGG	1 cut(s)	774
BanI	GGYRCC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	444
BbvI	GCAGC	4 cut(s)	236, 360, 454, 463
BccI	CCATC	4 cut(s)	491, 674, 687, 909
BciT130I	CCWGG	2 cut(s)	209, 796
BciVI	GTATCC	1 cut(s)	69
BclI	TGATCA	1 cut(s)	544
BcoDI	GTCTC	3 cut(s)	126, 614, 747
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	3 cut(s)	180, 363, 404
BfoI	RGCGCY	1 cut(s)	910
BfuI	GTATCC	1 cut(s)	69
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	4 cut(s)	225, 349, 468, 477
BlsI	GCNGC	4 cut(s)	226, 350, 469, 478
BmcAI	AGTACT	1 cut(s)	34
Bme1390I	CCNGG	2 cut(s)	209, 796
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	422, 811
BmiI	GGNNCC	2 cut(s)	171, 771
BmrFI	CCNGG	2 cut(s)	209, 796
BmsI	GCATC	3 cut(s)	625, 646, 861
BmtI	GCTAGC	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	73
Bpu14I	TTCGAA	2 cut(s)	86, 236
BpuEI	CTTGAG	1 cut(s)	388
BsaJI	CCNNGG	4 cut(s)	21, 208, 425, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 248, 557
Bse118I	RCCGGY	1 cut(s)	313
Bse21I	CCTNAGG	1 cut(s)	774
BseBI	CCWGG	2 cut(s)	209, 796
BseDI	CCNNGG	4 cut(s)	21, 208, 425, 795
BseGI	GGATG	3 cut(s)	604, 640, 698
BseLI	CCNNNNNNNGG	3 cut(s)	107, 248, 557
BseMII	CTCAG	4 cut(s)	144, 494, 600, 858
BseRI	GAGGAG	4 cut(s)	267, 632, 642, 782
BseXI	GCAGC	4 cut(s)	236, 360, 454, 463
Bsh1236I	CGCG	1 cut(s)	142
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	2 cut(s)	812, 861
BshNI	GGYRCC	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	3 cut(s)	107, 248, 557
BsmAI	GTCTC	3 cut(s)	126, 614, 747
BsnI	GGCC	2 cut(s)	812, 861
Bsp119I	TTCGAA	2 cut(s)	86, 236
Bsp143I	GATC	3 cut(s)	256, 544, 587
BspACI	CCGC	2 cut(s)	72, 792
BspANI	GGCC	2 cut(s)	812, 861
BspCNI	CTCAG	4 cut(s)	143, 493, 601, 859
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	171, 771
BspOI	GCTAGC	1 cut(s)	366
BspPI	GGATC	1 cut(s)	595
BspT104I	TTCGAA	2 cut(s)	86, 236
BspT107I	GGYRCC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	313
BssECI	CCNNGG	4 cut(s)	21, 208, 425, 795
BssMI	GATC	3 cut(s)	256, 544, 587
BssT1I	CCWWGG	2 cut(s)	21, 425
Bst2UI	CCWGG	2 cut(s)	209, 796
Bst4CI	ACNGT	4 cut(s)	32, 153, 398, 535
BstBI	TTCGAA	2 cut(s)	86, 236
BstC8I	GCNNGC	3 cut(s)	364, 522, 850
BstDEI	CTNAG	6 cut(s)	130, 298, 480, 609, 774, 867
BstF5I	GGATG	3 cut(s)	604, 640, 698
BstFNI	CGCG	1 cut(s)	142
BstH2I	RGCGCY	1 cut(s)	910
BstHHI	GCGC	2 cut(s)	142, 909
BstKTI	GATC	3 cut(s)	259, 547, 590
BstMAI	GTCTC	3 cut(s)	126, 614, 747
BstMBI	GATC	3 cut(s)	256, 544, 587
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 473, 476, 858
BstNI	CCWGG	2 cut(s)	209, 796
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	207, 794
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	4 cut(s)	236, 360, 454, 463
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	256
Bsu36I	CCTNAGG	1 cut(s)	774
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	812, 861
BtsCI	GGATG	3 cut(s)	604, 640, 698
Cac8I	GCNNGC	3 cut(s)	364, 522, 850
CfoI	GCGC	2 cut(s)	142, 909
Cfr10I	RCCGGY	1 cut(s)	313
Cfr13I	GGNCC	2 cut(s)	422, 811
Csp6I	GTAC	3 cut(s)	33, 98, 170
CspCI	CAANNNNNGTGG	2 cut(s)	629, 664
CviAII	CATG	5 cut(s)	416, 443, 457, 591, 819
CviQI	GTAC	3 cut(s)	33, 98, 170
DdeI	CTNAG	6 cut(s)	130, 298, 480, 609, 774, 867
DpnI	GATC	3 cut(s)	258, 546, 589
DpnII	GATC	3 cut(s)	256, 544, 587
DraI	TTTAAA	1 cut(s)	204
Eco130I	CCWWGG	2 cut(s)	21, 425
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	593
Eco81I	CCTNAGG	1 cut(s)	774
EcoRII	CCWGG	2 cut(s)	207, 794
EcoT14I	CCWWGG	2 cut(s)	21, 425
ErhI	CCWWGG	2 cut(s)	21, 425
FaeI	CATG	5 cut(s)	419, 446, 460, 594, 822
FalI	AAGNNNNNCTT	4 cut(s)	504, 536, 767, 799
FatI	CATG	5 cut(s)	415, 442, 456, 590, 818
FauI	CCCGC	2 cut(s)	65, 799
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	4 cut(s)	225, 349, 468, 477
FokI	GGATG	3 cut(s)	591, 647, 705
Fsp4HI	GCNGC	4 cut(s)	225, 349, 468, 477
FspBI	CTAG	3 cut(s)	180, 363, 404
GlaI	GCGC	2 cut(s)	141, 908
GluI	GCNGC	4 cut(s)	225, 349, 468, 477
GsuI	CTGGAG	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	910
HaeIII	GGCC	2 cut(s)	812, 861
HapII	CCGG	1 cut(s)	314
HhaI	GCGC	2 cut(s)	142, 909
Hin1II	CATG	5 cut(s)	419, 446, 460, 594, 822
Hin6I	GCGC	2 cut(s)	140, 907
HinP1I	GCGC	2 cut(s)	140, 907
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	483, 544, 573
Hpy188III	TCNNGA	5 cut(s)	52, 355, 585, 608, 764
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	607, 802, 865
HpyCH4III	ACNGT	4 cut(s)	32, 153, 398, 535
HpyCH4V	TGCA	7 cut(s)	281, 415, 524, 659, 728, 822, 852
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 473, 476, 858
HpyF3I	CTNAG	6 cut(s)	130, 298, 480, 609, 774, 867
Hsp92II	CATG	5 cut(s)	419, 446, 460, 594, 822
HspAI	GCGC	2 cut(s)	140, 907
KpnI	GGTACC	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	256, 544, 587
LmnI	GCTCC	1 cut(s)	769
Lsp1109I	GCAGC	4 cut(s)	236, 360, 454, 463
LweI	GCATC	3 cut(s)	625, 646, 861
MaeI	CTAG	3 cut(s)	180, 363, 404
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	3 cut(s)	258, 546, 589
MboI	GATC	3 cut(s)	256, 544, 587
MboII	GAAGA	5 cut(s)	390, 444, 524, 665, 831
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	8 cut(s)	82, 113, 276, 436, 526, 666, 759, 916
MmeI	TCCRAC	2 cut(s)	400, 783
MnlI	CCTC	6 cut(s)	245, 457, 610, 620, 625, 760
MseI	TTAA	6 cut(s)	203, 275, 330, 711, 753, 943
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	209, 796
MunI	CAATTG	1 cut(s)	666
MvaI	CCWGG	2 cut(s)	209, 796
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	4 cut(s)	224, 473, 476, 858
NdeII	GATC	3 cut(s)	256, 544, 587
NheI	GCTAGC	1 cut(s)	362
NlaIII	CATG	5 cut(s)	419, 446, 460, 594, 822
NlaIV	GGNNCC	2 cut(s)	171, 771
NspI	RCATGY	1 cut(s)	419
NspV	TTCGAA	2 cut(s)	86, 236
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	4 cut(s)	226, 350, 469, 478
Psp6I	CCWGG	2 cut(s)	207, 794
PspGI	CCWGG	2 cut(s)	207, 794
PspN4I	GGNNCC	2 cut(s)	171, 771
PspPI	GGNCC	2 cut(s)	422, 811
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	3 cut(s)	34, 99, 171
RsaNI	GTAC	3 cut(s)	33, 98, 170
SaqAI	TTAA	6 cut(s)	203, 275, 330, 711, 753, 943
SatI	GCNGC	4 cut(s)	225, 349, 468, 477
Sau3AI	GATC	3 cut(s)	256, 544, 587
Sau96I	GGNCC	2 cut(s)	422, 811
ScaI	AGTACT	1 cut(s)	34
ScrFI	CCNGG	2 cut(s)	209, 796
SfaNI	GCATC	3 cut(s)	625, 646, 861
SfuI	TTCGAA	2 cut(s)	86, 236
SinI	GGWCC	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	8 cut(s)	82, 113, 276, 436, 526, 666, 759, 916
SsiI	CCGC	2 cut(s)	72, 792
SspMI	CTAG	3 cut(s)	180, 363, 404
StyD4I	CCNGG	2 cut(s)	207, 794
StyI	CCWWGG	2 cut(s)	21, 425
TaaI	ACNGT	4 cut(s)	32, 153, 398, 535
TaqI	TCGA	3 cut(s)	86, 158, 236
TasI	AATT	8 cut(s)	82, 113, 276, 436, 526, 666, 759, 916
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	6 cut(s)	203, 275, 330, 711, 753, 943
Tru9I	TTAA	6 cut(s)	203, 275, 330, 711, 753, 943
TseI	GCWGC	4 cut(s)	224, 348, 467, 476
TspDTI	ATGAA	3 cut(s)	431, 525, 877
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	3 cut(s)	82, 436, 526
XceI	RCATGY	1 cut(s)	419
XspI	CTAG	3 cut(s)	180, 363, 404
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.