MD02G1151900.v1.1

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0011198
Physical Location & Seq
Forward (+)
12531013 .. 12534910
3898 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1151900.v1.1.491

Sequence Viewer

Length: 1305 bp
ATGCGGTCCGGGATACTTCCCAAGGTGAACACTGCTGTATGTTCTAGTATTTGGAGAGTGATTGGCGGGAGCAGGCCAGGAAATTCCAAAACTTTACTACCTTGTCGTGGGAAATTCTTGTCTCGGAGTTTAGGGTTGTCTTGTAGTTTACCGTATTCAACCCCTTTGATATCAGACGCAACTAGACATAGTTCCAGTCCTCTGCGTAAGGGAAAATTTATGGCTGCTTCAAGTTCGGCACCTGTCTTTGGAGACGTTTATGTTGATGACTTAATTTCAAGTTGCGGCAATTCATTAGACCTGTCAAAACCTACGGGTGTTTATTTTAATGATAGACGGCAGAGCAGTTTCCAGAAAGCCAGCTTGAGTTTGAGAAAAAAGGAATCATTCAACAGCCGTCTGATCTCTGTGCATGTTGGTCCTTGGTTGAGAAATTTTTATACCACATCTTCTATGTGCTACGCTACTGGTGCTGCTCATAATGTGACATTTGATGGAAACTCCAATGATGAACAACCCGCAAATTCCACCATTTTGTCTGACCAACCAAAAGCTCTGAAGCTGCTTTCAGGATCATGTTACCTGCCACATCCAGATAAGGAGGCGACAGGAGGAGAGGATGCCCATTTTATTTGTGAAGATGCACAAGCAATTGGTGTAGCAGATGGTGTGGGTGGATGGGCAGATGTCGGTGTCAATGCAGGATACTTTTCTCGTGAACTTATGTCTCATTCAGTGAGGGCTATTCAAGAGGAGCCTGAGGGCTGCTTTGACCCTGCCAGGGTGTTGGAGAAGGCCCACTCATGCACCAAAGCAAAGGGTTCTTCAACAGCTTGCATCATTGGCCTAACGGAAAAGGGACTACAAGCTATTAATCTTGGGGACAGTGGATTCTTAGTTGTTAGAGATGGATGTACCGTCTTCCAATCCCCCGTGCAGCAACATGGCTTCAATTTTACATATCAGCTGGAAAGTGGCAGTGGGGCTGATTTACCAAGCTCTGGACAGGTATTTTTGATTCCTGTTGCCTCTGGGGATGTCATCATAGCAGGAACGGACGGGTTGTTTGACAACTTGTATAACAACGAGATTACTGCTGTTGTCGTTCATGCGGTAAGAGCTGGCTTGGCACCACAGGTAACTGCTCAGAAGATAGCGGCTCTGGCGCGCCAGCGAGCACTGGATAAGAACAGGCAGACACCATTTTCAACGGCAGCTCAAGAAGCAGGGTTCCGTTATTACGGAGGCAAGCTTGATGACCTTACCGTTGTTGTGTCCTATGTAACTGGCCCCACTAAGGTGTGA

Protein Analysis

435

Amino Acids

46.18

Weight (kDa)

8.22

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66720 AT5G66720
fragaria_vesca FvH4_1g13720 FvH4_1g13720
malus_domestica MD02G1151900.v1.1 MD15G1266300.v1.1
prunus_persica Prupe.7G151100_v2.0.a1
pyrus_communis pycom02g11930 pycom15g23180
rosa_chinensis RchiOBHm_Chr2g0102131
rosa_laevigata RLG00000017132
rosa_multiflora Rmu_co8315037.1_g000001 Rmu_sc0000157.1_g000039
rosa_roxburghii Rroxscaffold_2G00140760
rosa_rugosa Rorug02G0104600
rosa_samantha Rh2AG153000 Rh2BG158900 Rh2CG158200 Rh2DG158600
rosa_wichuraiana Rw2G011940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 591
AccB1I GGYRCC 2 cut(s) 238, 1129
AccB7I CCANNNNNTGG 1 cut(s) 1001
AccII CGCG 1 cut(s) 1168
AciI CCGC 6 cut(s) 4, 66, 285, 519, 1112, 1157
AclWI GGATC 1 cut(s) 580
AcsI RAATTY 5 cut(s) 82, 113, 215, 433, 523
AcuI CTGAAG 1 cut(s) 578
AfaI GTAC 1 cut(s) 916
AfiI CCNNNNNNNGG 5 cut(s) 107, 248, 781, 1001, 1297
AgsI TTSAA 8 cut(s) 159, 231, 279, 391, 749, 828, 952, 1209
AjnI CCWGG 2 cut(s) 76, 779
AleI CACNNNNGTG 1 cut(s) 1298
Alw21I GWGCWC 1 cut(s) 1180
Alw26I GTCTC 3 cut(s) 126, 246, 732
AlwI GGATC 1 cut(s) 580
AoxI GGCC 4 cut(s) 74, 795, 844, 1288
ApeKI GCWGC 6 cut(s) 224, 473, 562, 765, 937, 1214
ApoI RAATTY 5 cut(s) 82, 113, 215, 433, 523
ArsI GACNNNNNNTTYG 2 cut(s) 1049, 1081
AscI GGCGCGCC 1 cut(s) 1166
AseI ATTAAT 1 cut(s) 873
AspLEI GCGC 2 cut(s) 1168, 1170
AspS9I GGNCC 4 cut(s) 6, 419, 796, 1289
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 2 cut(s) 6, 419
AxyI CCTNAGG 1 cut(s) 759
BanI GGYRCC 2 cut(s) 238, 1129
BauI CACGAG 1 cut(s) 714
BbsI GAAGAC 1 cut(s) 913
Bbv12I GWGCWC 1 cut(s) 1180
BbvI GCAGC 6 cut(s) 211, 460, 549, 752, 949, 1226
BccI CCATC 4 cut(s) 488, 659, 672, 902
BceAI ACGGC 3 cut(s) 353, 381, 1227
BcgI CGANNNNNNTGC 2 cut(s) 1076, 1110
BciT130I CCWGG 2 cut(s) 78, 781
BciVI GTATCC 2 cut(s) 6, 698
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 3 cut(s) 126, 246, 732
BfaI CTAG 2 cut(s) 45, 183
BfuAI ACCTGC 1 cut(s) 591
BfuI GTATCC 2 cut(s) 6, 698
BisI GCNGC 8 cut(s) 225, 286, 474, 563, 766, 938, 1158, 1215
BlsI GCNGC 8 cut(s) 226, 287, 475, 564, 767, 939, 1159, 1216
Bme1390I CCNGG 3 cut(s) 10, 78, 781
Bme18I GGWCC 2 cut(s) 6, 419
BmgT120I GGNCC 4 cut(s) 6, 419, 796, 1289
BmiI GGNNCC 5 cut(s) 240, 756, 1131, 1232, 1291
BmrFI CCNGG 3 cut(s) 10, 78, 781
BmsI GCATC 3 cut(s) 610, 631, 846
BpiI GAAGAC 1 cut(s) 913
BpuEI CTTGAG 2 cut(s) 385, 1203
BpuMI CCSGG 1 cut(s) 10
BsaJI CCNNGG 3 cut(s) 21, 422, 780
Bsc4I CCNNNNNNNGG 5 cut(s) 107, 248, 781, 1001, 1297
Bse1I ACTGG 4 cut(s) 195, 472, 1185, 1291
Bse21I CCTNAGG 1 cut(s) 759
BseBI CCWGG 2 cut(s) 78, 781
BseDI CCNNGG 3 cut(s) 21, 422, 780
BseGI GGATG 5 cut(s) 589, 625, 683, 917, 1042
BseLI CCNNNNNNNGG 5 cut(s) 107, 248, 781, 1001, 1297
BseMII CTCAG 2 cut(s) 750, 1160
BseNI ACTGG 4 cut(s) 195, 472, 1185, 1291
BsePI GCGCGC 1 cut(s) 1166
BseRI GAGGAG 2 cut(s) 627, 767
BseXI GCAGC 6 cut(s) 211, 460, 549, 752, 949, 1226
BsgI GTGCAG 1 cut(s) 956
Bsh1236I CGCG 1 cut(s) 1168
BshFI GGCC 4 cut(s) 76, 797, 846, 1290
BshNI GGYRCC 2 cut(s) 238, 1129
BsiHKAI GWGCWC 1 cut(s) 1180
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 2 cut(s) 873, 896
BslI CCNNNNNNNGG 5 cut(s) 107, 248, 781, 1001, 1297
BsmAI GTCTC 3 cut(s) 126, 246, 732
BsmBI CGTCTC 1 cut(s) 246
BsmFI GGGAC 2 cut(s) 873, 896
BsnI GGCC 4 cut(s) 76, 797, 846, 1290
Bsp1286I GDGCHC 1 cut(s) 1180
Bsp143I GATC 2 cut(s) 402, 572
BspACI CCGC 6 cut(s) 4, 66, 285, 519, 1112, 1157
BspANI GGCC 4 cut(s) 76, 797, 846, 1290
BspCNI CTCAG 2 cut(s) 751, 1159
BspFNI CGCG 1 cut(s) 1168
BspLI GGNNCC 5 cut(s) 240, 756, 1131, 1232, 1291
BspMI ACCTGC 1 cut(s) 591
BspPI GGATC 1 cut(s) 580
BspT107I GGYRCC 2 cut(s) 238, 1129
BsrI ACTGG 4 cut(s) 195, 472, 1185, 1291
BssECI CCNNGG 3 cut(s) 21, 422, 780
BssHII GCGCGC 1 cut(s) 1166
BssMI GATC 2 cut(s) 402, 572
BssSI CACGAG 1 cut(s) 714
BssT1I CCWWGG 2 cut(s) 21, 422
Bst2BI CACGAG 1 cut(s) 714
Bst2UI CCWGG 2 cut(s) 78, 781
Bst4CI ACNGT 4 cut(s) 153, 887, 919, 1267
BstC8I GCNNGC 8 cut(s) 74, 361, 835, 1123, 1168, 1172, 1176, 1250
BstDEI CTNAG 4 cut(s) 759, 895, 1146, 1296
BstF5I GGATG 5 cut(s) 589, 625, 683, 917, 1042
BstFNI CGCG 1 cut(s) 1168
BstHHI GCGC 2 cut(s) 1168, 1170
BstKTI GATC 2 cut(s) 405, 575
BstMAI GTCTC 3 cut(s) 126, 246, 732
BstMBI GATC 2 cut(s) 402, 572
BstMWI GCNNNNNNNGC 6 cut(s) 470, 843, 1118, 1127, 1163, 1223
BstNI CCWGG 2 cut(s) 78, 781
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 3 cut(s) 8, 76, 779
BstUI CGCG 1 cut(s) 1168
BstV1I GCAGC 6 cut(s) 211, 460, 549, 752, 949, 1226
BstV2I GAAGAC 1 cut(s) 913
BstXI CCANNNNNNTGG 1 cut(s) 787
Bsu36I CCTNAGG 1 cut(s) 759
BsuI GTATCC 2 cut(s) 6, 698
BsuRI GGCC 4 cut(s) 76, 797, 846, 1290
BtsCI GGATG 5 cut(s) 589, 625, 683, 917, 1042
BtsI GCAGTG 2 cut(s) 30, 985
BtsIMutI CAGTG 5 cut(s) 30, 741, 892, 985, 1178
BveI ACCTGC 1 cut(s) 591
Cac8I GCNNGC 8 cut(s) 74, 361, 835, 1123, 1168, 1172, 1176, 1250
CfoI GCGC 2 cut(s) 1168, 1170
Cfr13I GGNCC 4 cut(s) 6, 419, 796, 1289
CpoI CGGWCCG 1 cut(s) 6
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 915
CspI CGGWCCG 1 cut(s) 6
CviAII CATG 5 cut(s) 413, 576, 804, 944, 1109
CviQI GTAC 1 cut(s) 915
DdeI CTNAG 4 cut(s) 759, 895, 1146, 1296
DpnI GATC 2 cut(s) 404, 574
DpnII GATC 2 cut(s) 402, 572
Eco130I CCWWGG 2 cut(s) 21, 422
Eco32I GATATC 1 cut(s) 171
Eco47I GGWCC 2 cut(s) 6, 419
Eco57I CTGAAG 1 cut(s) 578
Eco81I CCTNAGG 1 cut(s) 759
EcoRII CCWGG 2 cut(s) 76, 779
EcoRV GATATC 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 21, 422
ErhI CCWWGG 2 cut(s) 21, 422
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 5 cut(s) 416, 579, 807, 947, 1112
FaqI GGGAC 2 cut(s) 873, 896
FatI CATG 5 cut(s) 412, 575, 803, 943, 1108
FauI CCCGC 2 cut(s) 59, 526
Fnu4HI GCNGC 8 cut(s) 225, 286, 474, 563, 766, 938, 1158, 1215
FokI GGATG 5 cut(s) 576, 632, 690, 924, 1049
Fsp4HI GCNGC 8 cut(s) 225, 286, 474, 563, 766, 938, 1158, 1215
FspBI CTAG 2 cut(s) 45, 183
GlaI GCGC 2 cut(s) 1167, 1169
GluI GCNGC 8 cut(s) 225, 286, 474, 563, 766, 938, 1158, 1215
HaeIII GGCC 4 cut(s) 76, 797, 846, 1290
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 185
HhaI GCGC 2 cut(s) 1168, 1170
Hin1II CATG 5 cut(s) 416, 579, 807, 947, 1112
Hin6I GCGC 2 cut(s) 1166, 1168
HinP1I GCGC 2 cut(s) 1166, 1168
HindIII AAGCTT 1 cut(s) 1250
HinfI GANTC 3 cut(s) 383, 891, 1018
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 3 cut(s) 28, 149, 719
Hpy188I TCNGA 6 cut(s) 126, 175, 402, 541, 558, 1149
Hpy188III TCNNGA 7 cut(s) 352, 570, 593, 716, 749, 1002, 1220
Hpy8I GTNNAC 3 cut(s) 28, 149, 719
HpyAV CCTTC 1 cut(s) 787
HpyCH4III ACNGT 4 cut(s) 153, 887, 919, 1267
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 6 cut(s) 412, 644, 701, 807, 837, 937
HpyF10VI GCNNNNNNNGC 6 cut(s) 470, 843, 1118, 1127, 1163, 1223
HpyF3I CTNAG 4 cut(s) 759, 895, 1146, 1296
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 5 cut(s) 416, 579, 807, 947, 1112
HspAI GCGC 2 cut(s) 1166, 1168
Kzo9I GATC 2 cut(s) 402, 572
LmnI GCTCC 2 cut(s) 69, 754
Lsp1109I GCAGC 6 cut(s) 211, 460, 549, 752, 949, 1226
LweI GCATC 3 cut(s) 610, 631, 846
MaeI CTAG 2 cut(s) 45, 183
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 4 cut(s) 484, 578, 1138, 1282
MalI GATC 2 cut(s) 404, 574
MboI GATC 2 cut(s) 402, 572
MboII GAAGA 5 cut(s) 441, 650, 816, 913, 1162
MfeI CAATTG 1 cut(s) 651
MhlI GDGCHC 1 cut(s) 1180
MluCI AATT 9 cut(s) 82, 113, 215, 273, 289, 433, 523, 651, 952
MmeI TCCRAC 1 cut(s) 768
MnlI CCTC 9 cut(s) 210, 595, 605, 610, 732, 745, 754, 1039, 1238
MseI TTAA 3 cut(s) 272, 327, 873
MslI CAYNNNNRTG 1 cut(s) 1298
MspA1I CMGCKG 1 cut(s) 967
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 3 cut(s) 10, 78, 781
MunI CAATTG 1 cut(s) 651
MvaI CCWGG 2 cut(s) 78, 781
MvnI CGCG 1 cut(s) 1168
MwoI GCNNNNNNNGC 6 cut(s) 470, 843, 1118, 1127, 1163, 1223
NciI CCSGG 1 cut(s) 10
NdeII GATC 2 cut(s) 402, 572
NlaIII CATG 5 cut(s) 416, 579, 807, 947, 1112
NlaIV GGNNCC 5 cut(s) 240, 756, 1131, 1232, 1291
NmuCI GTSAC 1 cut(s) 484
NspI RCATGY 1 cut(s) 416
OliI CACNNNNGTG 1 cut(s) 1298
PalAI GGCGCGCC 1 cut(s) 1166
PauI GCGCGC 1 cut(s) 1166
PfeI GAWTC 3 cut(s) 383, 891, 1018
PflMI CCANNNNNTGG 1 cut(s) 1001
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 8 cut(s) 226, 287, 475, 564, 767, 939, 1159, 1216
PshBI ATTAAT 1 cut(s) 873
Psp6I CCWGG 2 cut(s) 76, 779
PspGI CCWGG 2 cut(s) 76, 779
PspN4I GGNNCC 5 cut(s) 240, 756, 1131, 1232, 1291
PspPI GGNCC 4 cut(s) 6, 419, 796, 1289
PteI GCGCGC 1 cut(s) 1166
PvuII CAGCTG 1 cut(s) 967
RsaI GTAC 1 cut(s) 916
RsaNI GTAC 1 cut(s) 915
RseI CAYNNNNRTG 1 cut(s) 1298
Rsr2I CGGWCCG 1 cut(s) 6
RsrII CGGWCCG 1 cut(s) 6
SaqAI TTAA 3 cut(s) 272, 327, 873
SatI GCNGC 8 cut(s) 225, 286, 474, 563, 766, 938, 1158, 1215
Sau3AI GATC 2 cut(s) 402, 572
Sau96I GGNCC 4 cut(s) 6, 419, 796, 1289
ScrFI CCNGG 3 cut(s) 10, 78, 781
SduI GDGCHC 1 cut(s) 1180
SfaNI GCATC 3 cut(s) 610, 631, 846
SgsI GGCGCGCC 1 cut(s) 1166
SinI GGWCC 2 cut(s) 6, 419
SmiMI CAYNNNNRTG 1 cut(s) 1298
SmlI CTYRAG 2 cut(s) 364, 1218
SmoI CTYRAG 2 cut(s) 364, 1218
Sse9I AATT 9 cut(s) 82, 113, 215, 273, 289, 433, 523, 651, 952
SsiI CCGC 6 cut(s) 4, 66, 285, 519, 1112, 1157
SspMI CTAG 2 cut(s) 45, 183
StyD4I CCNGG 3 cut(s) 8, 76, 779
StyI CCWWGG 2 cut(s) 21, 422
TaaI ACNGT 4 cut(s) 153, 887, 919, 1267
TaiI ACGT 1 cut(s) 258
TasI AATT 9 cut(s) 82, 113, 215, 273, 289, 433, 523, 651, 952
TauI GCSGC 2 cut(s) 288, 1160
TfiI GAWTC 3 cut(s) 383, 891, 1018
Tru1I TTAA 3 cut(s) 272, 327, 873
Tru9I TTAA 3 cut(s) 272, 327, 873
TscAI CASTG 5 cut(s) 37, 741, 892, 985, 1185
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 6 cut(s) 224, 473, 562, 765, 937, 1214
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 3 cut(s) 282, 525, 1097
TspGWI ACGGA 4 cut(s) 866, 1070, 1223, 1257
TspRI CASTG 5 cut(s) 37, 741, 892, 985, 1185
Van91I CCANNNNNTGG 1 cut(s) 1001
VpaK11BI GGWCC 2 cut(s) 6, 419
VspI ATTAAT 1 cut(s) 873
XapI RAATTY 5 cut(s) 82, 113, 215, 433, 523
XceI RCATGY 1 cut(s) 416
XspI CTAG 2 cut(s) 45, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.