pycom15g23180

phosphatase 2c

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
17256027 .. 17256739
713 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g23180.2

Sequence Viewer

Length: 384 bp
ATGGCAACTCTAATGATGAACAACCAGCAAACTCTACCATTTTGTCTGACCAGATCATGTTACCTGCCACATCCTGATAAGGAGGCGACAGGAGGAGAGGATGCCCATTTCATTTGTGAAGATGCACAAGCAATTGGTGTAGCAGATGGTGTGGGTGGATGGGCAGATGTTGGTGTCAATGCTGGATTCTTTTCATGTGAACTTATGTCTCATTCTGTAAGGGCAATTCAAGAGGAACCTGAGGGCTGCTTTAACCCCGTCAGGGTGTTAGAGAAGGCCCACTCATGCACCAAATCAAAGGGTTCCTCAACAGCTTGCATTATTGGCCTTACGGAAAAGGTTTGTTTTTTCATTTTGACTAACCTTTCCTGCAGACCTCTATAA

Protein Analysis

128

Amino Acids

13.67

Weight (kDa)

5.23

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011198)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 1 cut(s) 230
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
Alw26I GTCTC 1 cut(s) 213
AoxI GGCC 2 cut(s) 276, 325
ApeKI GCWGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 277
AxyI CCTNAGG 1 cut(s) 240
BbvI GCAGC 1 cut(s) 233
BccI CCATC 2 cut(s) 140, 153
BcoDI GTCTC 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 370
BfuAI ACCTGC 1 cut(s) 72
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 237, 304
BmsI GCATC 2 cut(s) 91, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse21I CCTNAGG 1 cut(s) 240
BseGI GGATG 3 cut(s) 70, 106, 164
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 233
BshFI GGCC 2 cut(s) 278, 327
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 213
BsnI GGCC 2 cut(s) 278, 327
Bsp143I GATC 1 cut(s) 53
BspANI GGCC 2 cut(s) 278, 327
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 237, 304
BspMAI CTGCAG 1 cut(s) 374
BspMI ACCTGC 1 cut(s) 72
BssMI GATC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 3 cut(s) 70, 106, 164
BstKTI GATC 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 370
BstV1I GCAGC 1 cut(s) 233
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 2 cut(s) 278, 327
BtsCI GGATG 3 cut(s) 70, 106, 164
BveI ACCTGC 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 277
CviAII CATG 3 cut(s) 57, 195, 285
CviJI RGCY 4 cut(s) 246, 278, 314, 327
CviKI_1 RGCY 4 cut(s) 246, 278, 314, 327
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
Eco81I CCTNAGG 1 cut(s) 240
FaeI CATG 3 cut(s) 60, 198, 288
FaiI YATR 5 cut(s) 58, 196, 206, 286, 382
FatI CATG 3 cut(s) 56, 194, 284
Fnu4HI GCNGC 1 cut(s) 247
FokI GGATG 3 cut(s) 57, 113, 171
Fsp4HI GCNGC 1 cut(s) 247
GluI GCNGC 1 cut(s) 247
HaeIII GGCC 2 cut(s) 278, 327
Hin1II CATG 3 cut(s) 60, 198, 288
HinfI GANTC 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 2 cut(s) 74, 230
Hpy8I GTNNAC 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 268
HpyCH4V TGCA 4 cut(s) 125, 288, 318, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 324
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 3 cut(s) 60, 198, 288
Kzo9I GATC 1 cut(s) 53
LpnPI CCDG 8 cut(s) 38, 64, 75, 77, 87, 168, 247, 252
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 2 cut(s) 91, 112
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 1 cut(s) 131
MfeI CAATTG 1 cut(s) 132
MluCI AATT 2 cut(s) 132, 225
MnlI CCTC 6 cut(s) 76, 86, 91, 226, 235, 316
MseI TTAA 1 cut(s) 252
MunI CAATTG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 324
NdeII GATC 1 cut(s) 53
NlaIII CATG 3 cut(s) 60, 198, 288
NlaIV GGNNCC 2 cut(s) 237, 304
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 1 cut(s) 248
PspN4I GGNNCC 2 cut(s) 237, 304
PspPI GGNCC 1 cut(s) 277
PstI CTGCAG 1 cut(s) 374
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 1 cut(s) 247
Sau3AI GATC 1 cut(s) 53
Sau96I GGNCC 1 cut(s) 277
SetI ASST 6 cut(s) 66, 241, 316, 342, 366, 379
SfaNI GCATC 2 cut(s) 91, 112
SfcI CTRYAG 1 cut(s) 370
Sse9I AATT 2 cut(s) 132, 225
TasI AATT 2 cut(s) 132, 225
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TseI GCWGC 1 cut(s) 246
TspDTI ATGAA 4 cut(s) 32, 100, 183, 340
TspGWI ACGGA 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.