MD15G1266300.v1.1

phosphatase 2c

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
22874654 .. 22881099
6446 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1266300.v1.1.491

Sequence Viewer

Length: 210 bp
ATGTGGCCCGGGATACTTCCCAAGGTGAACACTACTGTATGTTCTAGTATTTGGAGAGTGATAAGCAGGAGCTGGCTAGGAGATTTGAAAACTTTACTACCTTGTCGTGGAAAATTGTTGTCACGGAGTTCAGGGTTGTCTTGTAGTGTACCGTATGCAACCCTTTTGATATCAGACGCAACTAGATATAGTTCCAGTCCTCCTGCGTAA

Protein Analysis

70

Amino Acids

7.5

Weight (kDa)

9.92

Isoelectric Point (pI)

61.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011198)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
AlwNI CAGNNNCTG 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 6
AsuC2I CCSGG 2 cut(s) 9, 10
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 8
BciVI GTATCC 1 cut(s) 6
BcnI CCSGG 2 cut(s) 9, 10
BfaI CTAG 3 cut(s) 45, 77, 183
BfuI GTATCC 1 cut(s) 6
Bme1390I CCNGG 2 cut(s) 9, 10
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 9, 10
BpuMI CCSGG 2 cut(s) 9, 10
BsaJI CCNNGG 2 cut(s) 8, 21
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 8, 21
BseLI CCNNNNNNNGG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 195
BshFI GGCC 1 cut(s) 7
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 107
BsnI GGCC 1 cut(s) 7
BsoBI CYCGRG 1 cut(s) 8
BspANI GGCC 1 cut(s) 7
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 8, 21
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 37, 153
BstC8I GCNNGC 1 cut(s) 74
BstSCI CCNGG 2 cut(s) 7, 8
BsuI GTATCC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 7
Cac8I GCNNGC 1 cut(s) 74
CaiI CAGNNNCTG 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 6
Cfr9I CCCGGG 1 cut(s) 8
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 149
CviJI RGCY 3 cut(s) 7, 72, 76
CviKI_1 RGCY 3 cut(s) 7, 72, 76
CviQI GTAC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 21
Eco32I GATATC 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 8
EcoRV GATATC 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaiI YATR 3 cut(s) 40, 156, 189
FspBI CTAG 3 cut(s) 45, 77, 183
HaeIII GGCC 1 cut(s) 7
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 185
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 28, 149
Hpy188I TCNGA 1 cut(s) 175
Hpy8I GTNNAC 2 cut(s) 28, 149
HpyCH4III ACNGT 2 cut(s) 37, 153
HpyCH4V TGCA 1 cut(s) 158
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 4 cut(s) 22, 52, 58, 117
MaeI CTAG 3 cut(s) 45, 77, 183
MaeIII GTNAC 1 cut(s) 120
MluCI AATT 1 cut(s) 113
MnlI CCTC 1 cut(s) 210
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 9, 10
NciI CCSGG 2 cut(s) 9, 10
NmuCI GTSAC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 72
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
Sau96I GGNCC 1 cut(s) 6
ScrFI CCNGG 2 cut(s) 9, 10
SetI ASST 3 cut(s) 27, 74, 103
SmaI CCCGGG 1 cut(s) 10
Sse9I AATT 1 cut(s) 113
SspMI CTAG 3 cut(s) 45, 77, 183
StyD4I CCNGG 2 cut(s) 7, 8
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 37, 153
TasI AATT 1 cut(s) 113
TseFI GTSAC 1 cut(s) 120
Tsp45I GTSAC 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 139
TspMI CCCGGG 1 cut(s) 8
XmaI CCCGGG 1 cut(s) 8
XspI CTAG 3 cut(s) 45, 77, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.