Rmu_co8315037.1_g000001

protein phosphatase 2C 55

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8315037.1
OG0011198
Physical Location & Seq
Forward (+)
1 .. 776
776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8315037.1_g000001.1.cds

Sequence Viewer

Length: 512 bp
gcaataattacaggaaaaacacagatgcaaagcccttaaaactaagttcaggatcatgctacctgccccatcctgataaagaggacactggtggggaggatgctcacttcatatgtgtgaatgaacaagctataggggtggcagatggtgttggtggctgggcagatcatggtgttaactcaggattgtattcccgagaactgatgtctaattctgtaacagctgttcaggaggaacccaaaggttcagttgatcctgctagggtgttggagaaagctcactccagcacaaaagccagaggttcctcaacagcatgcatcatagcactcacagaacagggtatacatgcaattaatttaggtgatagtgggtttatagttgttcgagacgggtgcaccgtcttcagatcccctgtgcagcagcatgatttcaacttcacttatcaactggagaatggagtcaacagtgatctacctagctctggccaggtcagcagcatatgttctttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C_2 SpoIIE

Protein Analysis

169

Amino Acids

17.95

Weight (kDa)

5.24

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66720 AT5G66720
fragaria_vesca FvH4_1g13720 FvH4_1g13720
malus_domestica MD02G1151900.v1.1 MD15G1266300.v1.1
prunus_persica Prupe.7G151100_v2.0.a1
pyrus_communis pycom02g11930 pycom15g23180
rosa_chinensis RchiOBHm_Chr2g0102131
rosa_laevigata RLG00000017132
rosa_multiflora Rmu_co8315037.1_g000001 Rmu_sc0000157.1_g000039
rosa_roxburghii Rroxscaffold_2G00140760
rosa_rugosa Rorug02G0104600
rosa_samantha Rh2AG153000 Rh2BG158900 Rh2CG158200 Rh2DG158600
rosa_wichuraiana Rw2G011940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 342
AclWI GGATC 3 cut(s) 60, 247, 401
AcoI YGGCCR 1 cut(s) 483
AcuI CTGAAG 1 cut(s) 387
AfiI CCNNNNNNNGG 1 cut(s) 481
AgsI TTSAA 1 cut(s) 432
AjnI CCWGG 1 cut(s) 485
AluBI AGCT 4 cut(s) 130, 223, 277, 479
AluI AGCT 4 cut(s) 130, 223, 277, 479
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 380
Alw44I GTGCAC 1 cut(s) 393
AlwI GGATC 3 cut(s) 60, 247, 401
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 1 cut(s) 483
ApaLI GTGCAC 1 cut(s) 393
ApeKI GCWGC 3 cut(s) 417, 420, 494
AseI ATTAAT 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 373
AvaI CYCGRG 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 397
BalI TGGCCA 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 3 cut(s) 429, 432, 506
BccI CCATC 2 cut(s) 77, 139
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 2 cut(s) 260, 476
BfmI CTRYAG 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 71
BisI GCNGC 3 cut(s) 418, 421, 495
BlsI GCNGC 3 cut(s) 419, 422, 496
Bme1390I CCNGG 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 236, 303
BmrFI CCNGG 1 cut(s) 487
BmsI GCATC 3 cut(s) 15, 90, 326
BpiI GAAGAC 1 cut(s) 393
BpmI CTGGAG 2 cut(s) 267, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 93, 452
BseBI CCWGG 1 cut(s) 487
BseGI GGATG 2 cut(s) 69, 105
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 2 cut(s) 93, 452
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 3 cut(s) 429, 432, 506
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 436
BshFI GGCC 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 1 cut(s) 380
BsmBI CGTCTC 1 cut(s) 380
BsnI GGCC 1 cut(s) 485
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 5 cut(s) 52, 165, 252, 406, 468
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 236, 303
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 3 cut(s) 60, 247, 401
BsrI ACTGG 2 cut(s) 93, 452
BssMI GATC 5 cut(s) 52, 165, 252, 406, 468
BssNAI GTATAC 1 cut(s) 343
Bst1107I GTATAC 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 487
Bst4CI ACNGT 2 cut(s) 399, 466
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 43, 180
BstF5I GGATG 2 cut(s) 69, 105
BstKTI GATC 5 cut(s) 55, 168, 255, 409, 471
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 5 cut(s) 52, 165, 252, 406, 468
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstNI CCWGG 1 cut(s) 487
BstNSI RCATGY 2 cut(s) 317, 349
BstSCI CCNGG 1 cut(s) 485
BstSFI CTRYAG 1 cut(s) 131
BstSLI GKGCMC 1 cut(s) 397
BstV1I GCAGC 3 cut(s) 429, 432, 506
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BstZ17I GTATAC 1 cut(s) 343
BsuRI GGCC 1 cut(s) 485
BtsCI GGATG 2 cut(s) 69, 105
BtsIMutI CAGTG 2 cut(s) 86, 471
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 315
CviAII CATG 5 cut(s) 56, 169, 314, 346, 424
CviJI RGCY 8 cut(s) 33, 130, 158, 223, 277, 295, 479, 485
CviKI_1 RGCY 8 cut(s) 33, 130, 158, 223, 277, 295, 479, 485
DdeI CTNAG 2 cut(s) 43, 180
DpnI GATC 5 cut(s) 54, 167, 254, 408, 470
DpnII GATC 5 cut(s) 52, 165, 252, 406, 468
EaeI YGGCCR 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 387
Eco88I CYCGRG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 485
EcoT22I ATGCAT 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 5 cut(s) 59, 172, 317, 349, 427
FatI CATG 5 cut(s) 55, 168, 313, 345, 423
FauNDI CATATG 2 cut(s) 112, 499
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 3 cut(s) 418, 421, 495
FokI GGATG 2 cut(s) 56, 112
Fsp4HI GCNGC 3 cut(s) 418, 421, 495
FspBI CTAG 2 cut(s) 260, 476
GluI GCNGC 3 cut(s) 418, 421, 495
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 2 cut(s) 267, 469
HaeIII GGCC 1 cut(s) 485
Hin1II CATG 5 cut(s) 59, 172, 317, 349, 427
HincII GTYRAC 2 cut(s) 177, 462
HindII GTYRAC 2 cut(s) 177, 462
HinfI GANTC 1 cut(s) 458
HpaI GTTAAC 1 cut(s) 177
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 4 cut(s) 177, 343, 395, 462
Hpy188I TCNGA 1 cut(s) 406
Hpy188III TCNNGA 6 cut(s) 50, 73, 182, 194, 229, 385
Hpy8I GTNNAC 4 cut(s) 177, 343, 395, 462
HpyCH4III ACNGT 2 cut(s) 399, 466
HpyCH4V TGCA 5 cut(s) 28, 317, 349, 395, 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 2 cut(s) 43, 180
Hsp92II CATG 5 cut(s) 59, 172, 317, 349, 427
KspAI GTTAAC 1 cut(s) 177
Kzo9I GATC 5 cut(s) 52, 165, 252, 406, 468
Lsp1109I GCAGC 3 cut(s) 429, 432, 506
LweI GCATC 3 cut(s) 15, 90, 326
MaeI CTAG 2 cut(s) 260, 476
MaeIII GTNAC 1 cut(s) 216
MalI GATC 5 cut(s) 54, 167, 254, 408, 470
MboI GATC 5 cut(s) 52, 165, 252, 406, 468
MboII GAAGA 1 cut(s) 393
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 397
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 4 cut(s) 6, 210, 350, 354
MluNI TGGCCA 1 cut(s) 485
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 5 cut(s) 75, 90, 225, 292, 315
Mox20I TGGCCA 1 cut(s) 485
Mph1103I ATGCAT 1 cut(s) 319
MscI TGGCCA 1 cut(s) 485
MseI TTAA 3 cut(s) 37, 176, 353
MslI CAYNNNNRTG 1 cut(s) 115
Msp20I TGGCCA 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 223
MspR9I CCNGG 1 cut(s) 487
MvaI CCWGG 1 cut(s) 487
MwoI GCNNNNNNNGC 1 cut(s) 491
NdeI CATATG 2 cut(s) 112, 499
NdeII GATC 5 cut(s) 52, 165, 252, 406, 468
NlaIII CATG 5 cut(s) 59, 172, 317, 349, 427
NlaIV GGNNCC 2 cut(s) 236, 303
NsiI ATGCAT 1 cut(s) 319
NspI RCATGY 2 cut(s) 317, 349
PaeI GCATGC 1 cut(s) 317
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PkrI GCNGC 3 cut(s) 419, 422, 496
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PshBI ATTAAT 1 cut(s) 353
PsiI TTATAA 1 cut(s) 510
Psp6I CCWGG 1 cut(s) 485
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 485
PspN4I GGNNCC 2 cut(s) 236, 303
PsrI GAACNNNNNNTAC 4 cut(s) 209, 241, 326, 358
PsuI RGATCY 1 cut(s) 406
PvuII CAGCTG 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 115
SaqAI TTAA 3 cut(s) 37, 176, 353
SatI GCNGC 3 cut(s) 418, 421, 495
Sau3AI GATC 5 cut(s) 52, 165, 252, 406, 468
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 487
SduI GDGCHC 1 cut(s) 397
SfaNI GCATC 3 cut(s) 15, 90, 326
SfcI CTRYAG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 115
SphI GCATGC 1 cut(s) 317
Sse9I AATT 4 cut(s) 6, 210, 350, 354
SspMI CTAG 2 cut(s) 260, 476
StyD4I CCNGG 1 cut(s) 485
TaaI ACNGT 2 cut(s) 399, 466
TaqI TCGA 1 cut(s) 384
TasI AATT 4 cut(s) 6, 210, 350, 354
Tru1I TTAA 3 cut(s) 37, 176, 353
Tru9I TTAA 3 cut(s) 37, 176, 353
TscAI CASTG 2 cut(s) 93, 471
TseI GCWGC 3 cut(s) 417, 420, 494
TspDTI ATGAA 2 cut(s) 99, 137
TspRI CASTG 2 cut(s) 93, 471
VneI GTGCAC 1 cut(s) 393
VspI ATTAAT 1 cut(s) 353
XceI RCATGY 2 cut(s) 317, 349
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 2 cut(s) 260, 476
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.