Prupe.7G151100_v2.0.a1

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011198
Physical Location & Seq
Reverse (-)
16223735 .. 16227399
3665 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G151100.1

Sequence Viewer

Length: 1317 bp
ATGCAGTCCGGGATACTCCCCAAGGTGAACACTAGTATATGTTCTAGTATTTGGAGAGTACTAAGTGGGAGCGGGCTACGGAATTCGAAAACTTTACTTCCTTGTCAGGGAAATTTTTTGTCTCGGAATTCAGGGTTGTCTTGTTCGTTACCATATTCAACCCTTTTGATACCCGACACTGCTAGATATAATTTTAGTCCTTTGCATAAGGGAAAATCTATGGCTGCTTCAAGTTCGACACCTGTTTTTGGGGACGTTTATGTTGATGACTTAATTTCAAGTTGCGGGAACTCATTAGACTTCACAAAACCTACGGCTGTTTATTTTAATGATAGACGCCAGAGCAGTTTCCTGAAAGCTAGCTTGAGTTTCAGAAAAAAAGAATCGTACAACAGTCATCTGATTTCTGTGCATGTTGGACCTTGGTTGAGGAATTTCCATAACTCATCTTCCGTGTGCTGTGCTGCTGGTGCTGCTCATAATGTATCATTTGATGGAAGCTCTAGTGATGAACAGCTGGCAAATTCTACCATTTTGTCCGACCCACCAATTTTGGGAGAAAAAGCTCTGAAACTACTTTCAGGATCATGTTATCTGCCACATCCTGATAAGGAGGAGACAGGAGGAGAGGATGCCCATTTTATTTGTGAAGATGCACAAGCAATTGGTGTAGCAGATGGTGTGGGTGGATGGGCAGATGTTGGCGTCAATGCAGGACACTTTTCTCGCGAACTTATGTCCCATTCTGTAAGGGCAATTCAAGAGGAGCCTGAGGGTTGCTTCGACCCTTCCAGGGTGTTAGAGAAGGCCCACTCATGCACCAAAGCAAAGGGTTCTTCAACAGCTTGCATCATTGGCCTTACGGAAAAGGGACTACAAGCTATCAATCTTGGGGACAGTGGATTTGTAGTTGTCAGAGATGGAAGCACCATCTTCCAATCCCCTGTGCAGCAGCATGGCTTCAATTTTACGTATCAGCTGGAAAGTGGCAGTGGGGCTGATCTACCTAGCTCCGGTCAGGTCTTTTTTATTCCTGTTGTCCCTGGAGATGTCATTATAGCTGGAACCGATGGGTTGTTTGACAACTTGTATAACAACGAGGTTACTGCTGTTCTTGTTCATGCGGTAAGGGCTGGCTTGGAACCACAGGTAACTGCTCAGAAGATAGCAGCTCTGGCACGGCAGCGAGCACTAGATAAGAACAGGCAGACACCATTTTCTACAGCTGCTCAAGAAGCCGGGTTCCGTTATTATGGAGGCAAGCTTGATGACATTACTGTTGTTGTGTCCTATATAACTGGCTCCAGTAATGTGTGA

Protein Analysis

439

Amino Acids

46.67

Weight (kDa)

6.06

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66720 AT5G66720
fragaria_vesca FvH4_1g13720 FvH4_1g13720
malus_domestica MD02G1151900.v1.1 MD15G1266300.v1.1
prunus_persica Prupe.7G151100_v2.0.a1
pyrus_communis pycom02g11930 pycom15g23180
rosa_chinensis RchiOBHm_Chr2g0102131
rosa_laevigata RLG00000017132
rosa_multiflora Rmu_co8315037.1_g000001 Rmu_sc0000157.1_g000039
rosa_roxburghii Rroxscaffold_2G00140760
rosa_rugosa Rorug02G0104600
rosa_samantha Rh2AG153000 Rh2BG158900 Rh2CG158200 Rh2DG158600
rosa_wichuraiana Rw2G011940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 72
AccII CGCG 1 cut(s) 729
AciI CCGC 3 cut(s) 72, 285, 1124
AclWI GGATC 1 cut(s) 592
AcsI RAATTY 5 cut(s) 82, 112, 127, 433, 523
AcyI GRCGYC 2 cut(s) 337, 705
AfaI GTAC 2 cut(s) 60, 389
AfiI CCNNNNNNNGG 5 cut(s) 107, 248, 554, 793, 1013
AgsI TTSAA 6 cut(s) 159, 231, 279, 761, 840, 964
AhlI ACTAGT 1 cut(s) 32
AjnI CCWGG 2 cut(s) 791, 1042
Alw21I GWGCWC 1 cut(s) 1192
Alw26I GTCTC 2 cut(s) 126, 611
AlwI GGATC 1 cut(s) 592
AoxI GGCC 2 cut(s) 807, 856
ApeKI GCWGC 8 cut(s) 224, 464, 473, 949, 952, 1169, 1183, 1226
ApoI RAATTY 5 cut(s) 82, 112, 127, 433, 523
ArsI GACNNNNNNTTYG 2 cut(s) 887, 919
AspS9I GGNCC 2 cut(s) 419, 808
AsuC2I CCSGG 2 cut(s) 10, 1240
AsuHPI GGTGA 1 cut(s) 37
AsuII TTCGAA 1 cut(s) 86
AsuNHI GCTAGC 1 cut(s) 359
AvaII GGWCC 1 cut(s) 419
AxyI CCTNAGG 1 cut(s) 771
Bbv12I GWGCWC 1 cut(s) 1192
BbvI GCAGC 8 cut(s) 211, 451, 460, 961, 964, 1181, 1195, 1213
BccI CCATC 6 cut(s) 488, 671, 684, 914, 938, 1064
BceAI ACGGC 2 cut(s) 330, 1196
BcgI CGANNNNNNTGC 2 cut(s) 1088, 1122
BciT130I CCWGG 2 cut(s) 793, 1044
BciVI GTATCC 1 cut(s) 6
BcnI CCSGG 2 cut(s) 10, 1240
BcoDI GTCTC 2 cut(s) 126, 611
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 7 cut(s) 33, 45, 183, 360, 504, 1008, 1193
BfmI CTRYAG 1 cut(s) 1221
BfuI GTATCC 1 cut(s) 6
BisI GCNGC 8 cut(s) 225, 465, 474, 950, 953, 1170, 1184, 1227
BlsI GCNGC 8 cut(s) 226, 466, 475, 951, 954, 1171, 1185, 1228
BmcAI AGTACT 1 cut(s) 60
Bme1390I CCNGG 4 cut(s) 10, 793, 1044, 1240
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 2 cut(s) 419, 808
BmiI GGNNCC 5 cut(s) 768, 1066, 1143, 1244, 1303
BmrFI CCNGG 4 cut(s) 10, 793, 1044, 1240
BmsI GCATC 3 cut(s) 622, 643, 858
BmtI GCTAGC 1 cut(s) 363
BpmI CTGGAG 2 cut(s) 1065, 1288
Bpu14I TTCGAA 1 cut(s) 86
BpuEI CTTGAG 2 cut(s) 385, 1215
BpuMI CCSGG 2 cut(s) 10, 1240
BsaAI YACGTR 1 cut(s) 972
BsaHI GRCGYC 2 cut(s) 337, 705
BsaJI CCNNGG 4 cut(s) 21, 422, 792, 1042
BsaWI WCCGGW 1 cut(s) 1013
Bsc4I CCNNNNNNNGG 5 cut(s) 107, 248, 554, 793, 1013
Bse1I ACTGG 2 cut(s) 1303, 1305
Bse21I CCTNAGG 1 cut(s) 771
BseBI CCWGG 2 cut(s) 793, 1044
BseDI CCNNGG 4 cut(s) 21, 422, 792, 1042
BseGI GGATG 3 cut(s) 601, 637, 695
BseLI CCNNNNNNNGG 5 cut(s) 107, 248, 554, 793, 1013
BseMII CTCAG 2 cut(s) 762, 1172
BseNI ACTGG 2 cut(s) 1303, 1305
BseRI GAGGAG 3 cut(s) 629, 639, 779
BseXI GCAGC 8 cut(s) 211, 451, 460, 961, 964, 1181, 1195, 1213
BsgI GTGCAG 1 cut(s) 968
Bsh1236I CGCG 1 cut(s) 729
BshFI GGCC 2 cut(s) 809, 858
BsiHKAI GWGCWC 1 cut(s) 1192
BsiSI CCGG 3 cut(s) 9, 1014, 1239
BslFI GGGAC 5 cut(s) 266, 724, 885, 908, 1025
BslI CCNNNNNNNGG 5 cut(s) 107, 248, 554, 793, 1013
BsmAI GTCTC 2 cut(s) 126, 611
BsmFI GGGAC 5 cut(s) 266, 724, 885, 908, 1025
BsnI GGCC 2 cut(s) 809, 858
Bsp119I TTCGAA 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 1192
Bsp143I GATC 2 cut(s) 584, 1000
Bsp68I TCGCGA 1 cut(s) 729
BspACI CCGC 3 cut(s) 72, 285, 1124
BspANI GGCC 2 cut(s) 809, 858
BspCNI CTCAG 2 cut(s) 763, 1171
BspFNI CGCG 1 cut(s) 729
BspLI GGNNCC 5 cut(s) 768, 1066, 1143, 1244, 1303
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 1 cut(s) 592
BspT104I TTCGAA 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 72
BsrI ACTGG 2 cut(s) 1303, 1305
BssECI CCNNGG 4 cut(s) 21, 422, 792, 1042
BssMI GATC 2 cut(s) 584, 1000
BssNI GRCGYC 2 cut(s) 337, 705
BssT1I CCWWGG 2 cut(s) 21, 422
Bst2UI CCWGG 2 cut(s) 793, 1044
Bst4CI ACNGT 3 cut(s) 395, 899, 1279
BstACI GRCGYC 2 cut(s) 337, 705
BstBAI YACGTR 1 cut(s) 972
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 7 cut(s) 74, 361, 519, 847, 1135, 1188, 1262
BstDEI CTNAG 3 cut(s) 62, 771, 1158
BstF5I GGATG 3 cut(s) 601, 637, 695
BstFNI CGCG 1 cut(s) 729
BstKTI GATC 2 cut(s) 587, 1003
BstMAI GTCTC 2 cut(s) 126, 611
BstMBI GATC 2 cut(s) 584, 1000
BstMWI GCNNNNNNNGC 6 cut(s) 470, 473, 855, 1130, 1175, 1235
BstNI CCWGG 2 cut(s) 793, 1044
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 4 cut(s) 8, 791, 1042, 1238
BstSFI CTRYAG 1 cut(s) 1221
BstSNI TACGTA 1 cut(s) 972
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 8 cut(s) 211, 451, 460, 961, 964, 1181, 1195, 1213
Bsu36I CCTNAGG 1 cut(s) 771
BsuI GTATCC 1 cut(s) 6
BsuRI GGCC 2 cut(s) 809, 858
BtsCI GGATG 3 cut(s) 601, 637, 695
BtsI GCAGTG 2 cut(s) 177, 997
BtsIMutI CAGTG 3 cut(s) 177, 904, 997
BtuMI TCGCGA 1 cut(s) 729
Cac8I GCNNGC 7 cut(s) 74, 361, 519, 847, 1135, 1188, 1262
Cfr13I GGNCC 2 cut(s) 419, 808
CseI GACGC 2 cut(s) 345, 694
Csp6I GTAC 2 cut(s) 59, 388
CspCI CAANNNNNGTGG 2 cut(s) 534, 569
CviAII CATG 5 cut(s) 413, 588, 816, 956, 1121
CviQI GTAC 2 cut(s) 59, 388
DdeI CTNAG 3 cut(s) 62, 771, 1158
DpnI GATC 2 cut(s) 586, 1002
DpnII GATC 2 cut(s) 584, 1000
Eco105I TACGTA 1 cut(s) 972
Eco130I CCWWGG 2 cut(s) 21, 422
Eco47I GGWCC 1 cut(s) 419
Eco81I CCTNAGG 1 cut(s) 771
EcoRI GAATTC 2 cut(s) 82, 127
EcoRII CCWGG 2 cut(s) 791, 1042
EcoT14I CCWWGG 2 cut(s) 21, 422
ErhI CCWWGG 2 cut(s) 21, 422
FaeI CATG 5 cut(s) 416, 591, 819, 959, 1124
FaqI GGGAC 5 cut(s) 266, 724, 885, 908, 1025
FatI CATG 5 cut(s) 412, 587, 815, 955, 1120
FauI CCCGC 2 cut(s) 65, 278
Fnu4HI GCNGC 8 cut(s) 225, 465, 474, 950, 953, 1170, 1184, 1227
FokI GGATG 3 cut(s) 588, 644, 702
Fsp4HI GCNGC 8 cut(s) 225, 465, 474, 950, 953, 1170, 1184, 1227
FspBI CTAG 7 cut(s) 33, 45, 183, 360, 504, 1008, 1193
GluI GCNGC 8 cut(s) 225, 465, 474, 950, 953, 1170, 1184, 1227
GsuI CTGGAG 2 cut(s) 1065, 1288
HaeIII GGCC 2 cut(s) 809, 858
HapII CCGG 3 cut(s) 9, 1014, 1239
HgaI GACGC 2 cut(s) 345, 694
Hin1I GRCGYC 2 cut(s) 337, 705
Hin1II CATG 5 cut(s) 416, 591, 819, 959, 1124
HindIII AAGCTT 1 cut(s) 1262
HinfI GANTC 1 cut(s) 383
HpaII CCGG 3 cut(s) 9, 1014, 1239
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 7 cut(s) 126, 374, 402, 541, 570, 917, 1161
Hpy188III TCNNGA 6 cut(s) 352, 582, 605, 728, 761, 1232
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 798, 799
HpyCH4III ACNGT 3 cut(s) 395, 899, 1279
HpyCH4IV ACGT 2 cut(s) 255, 971
HpyCH4V TGCA 8 cut(s) 4, 205, 412, 656, 713, 819, 849, 949
HpyF10VI GCNNNNNNNGC 6 cut(s) 470, 473, 855, 1130, 1175, 1235
HpyF3I CTNAG 3 cut(s) 62, 771, 1158
HpySE526I ACGT 2 cut(s) 255, 971
Hsp92I GRCGYC 2 cut(s) 337, 705
Hsp92II CATG 5 cut(s) 416, 591, 819, 959, 1124
Kzo9I GATC 2 cut(s) 584, 1000
LmnI GCTCC 4 cut(s) 69, 766, 1016, 1307
Lsp1109I GCAGC 8 cut(s) 211, 451, 460, 961, 964, 1181, 1195, 1213
LweI GCATC 3 cut(s) 622, 643, 858
MaeI CTAG 7 cut(s) 33, 45, 183, 360, 504, 1008, 1193
MaeII ACGT 2 cut(s) 255, 971
MaeIII GTNAC 3 cut(s) 147, 1102, 1150
MalI GATC 2 cut(s) 586, 1002
MbiI CCGCTC 1 cut(s) 72
MboI GATC 2 cut(s) 584, 1000
MboII GAAGA 5 cut(s) 441, 662, 828, 925, 1174
MfeI CAATTG 1 cut(s) 663
MhlI GDGCHC 1 cut(s) 1192
MmeI TCCRAC 2 cut(s) 397, 564
MnlI CCTC 8 cut(s) 423, 607, 617, 622, 757, 766, 1093, 1250
MseI TTAA 2 cut(s) 272, 327
MspA1I CMGCKG 3 cut(s) 517, 979, 1226
MspI CCGG 3 cut(s) 9, 1014, 1239
MspR9I CCNGG 4 cut(s) 10, 793, 1044, 1240
MunI CAATTG 1 cut(s) 663
MvaI CCWGG 2 cut(s) 793, 1044
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 6 cut(s) 470, 473, 855, 1130, 1175, 1235
NciI CCSGG 2 cut(s) 10, 1240
NdeII GATC 2 cut(s) 584, 1000
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 5 cut(s) 416, 591, 819, 959, 1124
NlaIV GGNNCC 5 cut(s) 768, 1066, 1143, 1244, 1303
NruI TCGCGA 1 cut(s) 729
NspI RCATGY 1 cut(s) 416
NspV TTCGAA 1 cut(s) 86
PfeI GAWTC 1 cut(s) 383
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 8 cut(s) 226, 466, 475, 951, 954, 1171, 1185, 1228
Ppu21I YACGTR 1 cut(s) 972
Psp6I CCWGG 2 cut(s) 791, 1042
PspGI CCWGG 2 cut(s) 791, 1042
PspN4I GGNNCC 5 cut(s) 768, 1066, 1143, 1244, 1303
PspPI GGNCC 2 cut(s) 419, 808
PvuII CAGCTG 3 cut(s) 517, 979, 1226
RruI TCGCGA 1 cut(s) 729
RsaI GTAC 2 cut(s) 60, 389
RsaNI GTAC 2 cut(s) 59, 388
SaqAI TTAA 2 cut(s) 272, 327
SatI GCNGC 8 cut(s) 225, 465, 474, 950, 953, 1170, 1184, 1227
Sau3AI GATC 2 cut(s) 584, 1000
Sau96I GGNCC 2 cut(s) 419, 808
ScaI AGTACT 1 cut(s) 60
ScrFI CCNGG 4 cut(s) 10, 793, 1044, 1240
SduI GDGCHC 1 cut(s) 1192
SfaNI GCATC 3 cut(s) 622, 643, 858
SfcI CTRYAG 1 cut(s) 1221
SfuI TTCGAA 1 cut(s) 86
SinI GGWCC 1 cut(s) 419
SmlI CTYRAG 2 cut(s) 364, 1230
SmoI CTYRAG 2 cut(s) 364, 1230
SnaBI TACGTA 1 cut(s) 972
SpeI ACTAGT 1 cut(s) 32
SsiI CCGC 3 cut(s) 72, 285, 1124
SspMI CTAG 7 cut(s) 33, 45, 183, 360, 504, 1008, 1193
StyD4I CCNGG 4 cut(s) 8, 791, 1042, 1238
StyI CCWWGG 2 cut(s) 21, 422
TaaI ACNGT 3 cut(s) 395, 899, 1279
TaiI ACGT 2 cut(s) 258, 974
TaqI TCGA 3 cut(s) 86, 236, 783
TatI WGTACW 1 cut(s) 58
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 2 cut(s) 272, 327
Tru9I TTAA 2 cut(s) 272, 327
TscAI CASTG 3 cut(s) 184, 904, 997
TseI GCWGC 8 cut(s) 224, 464, 473, 949, 952, 1169, 1183, 1226
TspDTI ATGAA 2 cut(s) 525, 1109
TspGWI ACGGA 4 cut(s) 94, 442, 878, 1235
TspRI CASTG 3 cut(s) 184, 904, 997
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 5 cut(s) 82, 112, 127, 433, 523
XceI RCATGY 1 cut(s) 416
XspI CTAG 7 cut(s) 33, 45, 183, 360, 504, 1008, 1193
ZrmI AGTACT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.