Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012416

Physical Location & Seq

Genomic Coordinates Reverse (-)

26785106 .. 26786431

Gene Structure 1326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G67110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGTGATTCTGACGTCGGTGATCGTCTTCCCCCTCCATCTTCTTCCGACGAACTCTCGAGCTTTCTCCGACAGATTCTTTCCCGTACTCCTACAGCTCAACCTTCTTCACCACCGAAGAGTACTAATGTTTCCTCCGCTGAGACCTTCTTCCCTTCCGTTTCCGGCGGAGCTGTTTCTTCCGTCGGTTATGGAGTCTCTGAAACTGGCCAAGACAAATATGCTTTCGAACACAAGAGAAGTGGAGCTAAACAGAGAAATTCGTTGAAGAGAAACATTGATGCTCAATTCCACAACTTGTCTGAAAAGAAGAGGAGGAGCAAGATCAACGAGAAAATGAAAGCTTTGCAGAAACTCATTCCCAATTCCAACAAGACTGATAAAGCCTCAATGCTTGATGAAGCTATAGAATATCTGAAGCAGCTTCAACTTCAAGTCCAGACTTTAGCCGTTATGAATGGTTTAGGCTTAAACCCTATGCGATTACCACAGGTTCCACCTCCAACTCATACAAGGATCAATGAGACCTTAGAGCAAGACCTGAACCTAGAGACTCTTCTCGCTGCTCCTCACTCGCTGGAACCAGCTAAAACAAGTCAAGGAATGTGCTTTTCCACAGCCACTCTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009900 GO:0009908 GO:0010029 GO:0010047 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

210

Amino Acids

22.96

Weight (kDa)

9.18

Isoelectric Point (pI)

64.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67110 AT5G67110 AT5G67110
fragaria_vesca	FvH4_2g34100
malus_domestica	MD15G1079800.v1.1
prunus_persica	Prupe.1G432800_v2.0.a1
pyrus_communis	pycom08g07960 pycom15g07430
rosa_chinensis	RchiOBHm_Chr6g0308251
rosa_laevigata	RLG00000010654
rosa_multiflora	Rmu_sc0012549.1_g000001 Rmu_ssc0000355.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160320
rosa_rugosa	Rorug06G0365400
rosa_samantha	Rh6AG474400 Rh6BG485100 Rh6CG490100 Rh6DG476500
rosa_wichuraiana	Rw6G041380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	18
AciI	CCGC	2 cut(s)	138, 168
AclWI	GGATC	1 cut(s)	524
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	2 cut(s)	88, 124
AgsI	TTSAA	3 cut(s)	268, 428, 434
AluBI	AGCT	8 cut(s)	63, 98, 173, 248, 344, 404, 424, 587
AluI	AGCT	8 cut(s)	63, 98, 173, 248, 344, 404, 424, 587
Alw26I	GTCTC	4 cut(s)	137, 202, 518, 545
AlwI	GGATC	1 cut(s)	524
Ama87I	CYCGRG	1 cut(s)	58
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	2 cut(s)	421, 563
ApoI	RAATTY	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	17, 32, 102
AsuII	TTCGAA	1 cut(s)	228
AvaI	CYCGRG	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	433, 550
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	434
BcoDI	GTCTC	4 cut(s)	137, 202, 518, 545
BfaI	CTAG	1 cut(s)	548
BfmI	CTRYAG	2 cut(s)	93, 405
BisI	GCNGC	2 cut(s)	422, 564
BlsI	GCNGC	2 cut(s)	423, 565
BmcAI	AGTACT	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	58
BmiI	GGNNCC	2 cut(s)	495, 582
BmsI	GCATC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	20
Bpu14I	TTCGAA	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	15
BsaI	GGTCTC	2 cut(s)	137, 518
Bse1I	ACTGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	3 cut(s)	328, 331, 558
BseXI	GCAGC	2 cut(s)	433, 550
BshFI	GGCC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	165
BsmAI	GTCTC	4 cut(s)	137, 202, 518, 545
BsnI	GGCC	1 cut(s)	210
Bso31I	GGTCTC	2 cut(s)	137, 518
BsoBI	CYCGRG	1 cut(s)	58
Bsp119I	TTCGAA	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	22, 324, 516
BspACI	CCGC	2 cut(s)	138, 168
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	495, 582
BspPI	GGATC	1 cut(s)	524
BspT104I	TTCGAA	1 cut(s)	228
BspTNI	GGTCTC	2 cut(s)	137, 518
BsrI	ACTGG	1 cut(s)	211
BssMI	GATC	3 cut(s)	22, 324, 516
BssNI	GRCGYC	1 cut(s)	15
Bst6I	CTCTTC	4 cut(s)	113, 263, 305, 561
BstACI	GRCGYC	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	141, 529
BstKTI	GATC	3 cut(s)	25, 327, 519
BstMAI	GTCTC	4 cut(s)	137, 202, 518, 545
BstMBI	GATC	3 cut(s)	22, 324, 516
BstSFI	CTRYAG	2 cut(s)	93, 405
BstV1I	GCAGC	2 cut(s)	433, 550
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	87, 123
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviQI	GTAC	2 cut(s)	87, 123
DdeI	CTNAG	2 cut(s)	141, 529
DpnI	GATC	3 cut(s)	24, 326, 518
DpnII	GATC	3 cut(s)	22, 324, 516
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	4 cut(s)	113, 263, 305, 561
EarI	CTCTTC	4 cut(s)	113, 263, 305, 561
EciI	GGCGGA	1 cut(s)	183
Eco31I	GGTCTC	2 cut(s)	137, 518
Eco57I	CTGAAG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	58
FaiI	YATR	6 cut(s)	192, 222, 407, 455, 479, 510
Fnu4HI	GCNGC	2 cut(s)	422, 564
Fsp4HI	GCNGC	2 cut(s)	422, 564
FspBI	CTAG	1 cut(s)	548
GluI	GCNGC	2 cut(s)	422, 564
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	165
Hin1I	GRCGYC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	4 cut(s)	8, 76, 195, 553
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	3 cut(s)	17, 32, 102
Hpy188I	TCNGA	6 cut(s)	13, 49, 71, 202, 304, 417
Hpy188III	TCNNGA	2 cut(s)	58, 439
Hpy99I	CGWCG	3 cut(s)	20, 53, 188
HpyAV	CCTTC	3 cut(s)	114, 157, 165
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	349
HpyF3I	CTNAG	2 cut(s)	141, 529
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	22, 324, 516
LmnI	GCTCC	4 cut(s)	170, 245, 318, 571
LpnPI	CCDG	7 cut(s)	178, 192, 452, 476, 554, 563, 597
Lsp1109I	GCAGC	2 cut(s)	433, 550
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	548
MaeII	ACGT	1 cut(s)	15
MalI	GATC	3 cut(s)	24, 326, 518
MboI	GATC	3 cut(s)	22, 324, 516
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	3 cut(s)	259, 287, 364
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	204, 547
MmeI	TCCRAC	4 cut(s)	72, 94, 393, 527
MnlI	CCTC	7 cut(s)	45, 145, 306, 309, 397, 510, 579
Mox20I	TGGCCA	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	165
NdeII	GATC	3 cut(s)	22, 324, 516
NlaIV	GGNNCC	2 cut(s)	495, 582
NspV	TTCGAA	1 cut(s)	228
PaeR7I	CTCGAG	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	8, 76
PkrI	GCNGC	2 cut(s)	423, 565
PleI	GAGTC	2 cut(s)	203, 547
PpsI	GAGTC	2 cut(s)	203, 547
PspN4I	GGNNCC	2 cut(s)	495, 582
RsaI	GTAC	2 cut(s)	88, 124
RsaNI	GTAC	2 cut(s)	87, 123
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	2 cut(s)	422, 564
Sau3AI	GATC	3 cut(s)	22, 324, 516
ScaI	AGTACT	1 cut(s)	124
SchI	GAGTC	2 cut(s)	204, 547
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	2 cut(s)	93, 405
Sfr274I	CTCGAG	1 cut(s)	58
SfuI	TTCGAA	1 cut(s)	228
SlaI	CTCGAG	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	3 cut(s)	259, 287, 364
SsiI	CCGC	2 cut(s)	138, 168
SspMI	CTAG	1 cut(s)	548
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	59, 228
TasI	AATT	3 cut(s)	259, 287, 364
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	2 cut(s)	8, 76
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TseI	GCWGC	2 cut(s)	421, 563
TspDTI	ATGAA	3 cut(s)	353, 414, 470
TspGWI	ACGGA	2 cut(s)	148, 172
XapI	RAATTY	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	58
XspI	CTAG	1 cut(s)	548
ZraI	GACGTC	1 cut(s)	16
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.