Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012416

Physical Location & Seq

Genomic Coordinates Forward (+)

25421089 .. 25423999

Gene Structure 2911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCCGATCTGTACGGAACGCCGCAGGACTCGGAAGAAATCTCCAACATTCTCAGCCACCTCCTCCACCACGGCGGCTCCCCCTTCAAGCCCTCCTCTTACACGCACCTCCTCAACTCCTCAGTCCCGCCGCCGTCTCACGAGTTGCTGGCCCGATCAGCCGACCGGTCCGACTCCGACCGCCCCTCCGACTTCAATTTCTCCGACTCCGGCGGGTACTTCGTGGACTCCGACGCCAACACTTCGAAGAAGAAGAAAGGGAGGAGAGTCTCGTCGGAGAATGATCTCGGTGACGTCAGCTGTGACAGTGAGGGTCCTGAAGCGCCGGAGGTTCCGTTGAACCCTGCGCCGCCGCGTAGTTTGTCCAAGAGGAGCAGAGCGGCGGAGGTCCATAACTTGTCGGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAAATGAAAGCTTTGCAGAACCTGATTCCTAATTCTAACAAGACGGATAAGGCGTCAATGCTGGATGAAGCAATTGAGTATTTGAAGCAGCTCCAGCTTCAAGTACAGATGTTAACAATGAGAAATGGACTGGGTTTGCATCCCATGTGCTTACCAGGTATGATGCAGCCTGTGGAGTTGCCTCATATGGCATTGGGCTTTGACGAAGGAAGTAACAAAGTTCCAAAGTCTAGCAGAGGAACGAGTCCATTTTTTGGGAGTGAAGAGAACTCAATGCAGTCAGCCTATAATGTTTCTAGTGGATGCACAATCTCAAATCAGCCAATGGTCATACCCTCAGCTGCAAATGTCCATACTCCGGAAGCTTCATTTGTTTTTGAACCATCAACTCAAGCTTACTACAGACCCGTCTTTGTTGCCACATCTTCTAAGGAACTATTCTCCGGTGAAGGTGAACCACCCTCAAATTCAGATTCCAATCAGACGGGGAAAAACTCTTCATCAGATGCTGATAAGGTGCCCTCAAAGAGACCTGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

325

Amino Acids

35.24

Weight (kDa)

5.88

Isoelectric Point (pI)

69.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	129 - 176	4.4e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	135 - 180	4.1e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67110 AT5G67110 AT5G67110
fragaria_vesca	FvH4_2g34100
malus_domestica	MD15G1079800.v1.1
prunus_persica	Prupe.1G432800_v2.0.a1
pyrus_communis	pycom08g07960 pycom15g07430
rosa_chinensis	RchiOBHm_Chr6g0308251
rosa_laevigata	RLG00000010654
rosa_multiflora	Rmu_sc0012549.1_g000001 Rmu_ssc0000355.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160320
rosa_rugosa	Rorug06G0365400
rosa_samantha	Rh6AG474400 Rh6BG485100 Rh6CG490100 Rh6DG476500
rosa_wichuraiana	Rw6G041380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	949
AccB7I	CCANNNNNTGG	1 cut(s)	686
AccBSI	CCGCTC	1 cut(s)	380
AccII	CGCG	1 cut(s)	355
AccIII	TCCGGA	1 cut(s)	790
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	898
AcuI	CTGAAG	1 cut(s)	339
AcyI	GRCGYC	3 cut(s)	234, 294, 485
AfaI	GTAC	3 cut(s)	14, 218, 537
AfiI	CCNNNNNNNGG	2 cut(s)	686, 790
AgeI	ACCGGT	1 cut(s)	165
AgsI	TTSAA	6 cut(s)	88, 196, 340, 517, 533, 812
AjnI	CCWGG	1 cut(s)	586
AluBI	AGCT	7 cut(s)	300, 443, 523, 529, 773, 797, 827
AluI	AGCT	7 cut(s)	300, 443, 523, 529, 773, 797, 827
Alw26I	GTCTC	3 cut(s)	141, 274, 955
AlwNI	CAGNNNCTG	2 cut(s)	454, 941
Aor13HI	TCCGGA	1 cut(s)	790
AoxI	GGCC	2 cut(s)	3, 150
ApeKI	GCWGC	3 cut(s)	520, 598, 773
ApoI	RAATTY	1 cut(s)	898
AseI	ATTAAT	1 cut(s)	426
AsiGI	ACCGGT	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	325, 349
AspS9I	GGNCC	4 cut(s)	151, 168, 314, 388
AsuHPI	GGTGA	3 cut(s)	302, 890, 896
AsuII	TTCGAA	1 cut(s)	245
AvaII	GGWCC	3 cut(s)	168, 314, 388
BaeGI	GKGCMC	1 cut(s)	954
BanI	GGYRCC	1 cut(s)	949
BauI	CACGAG	1 cut(s)	140
BbvCI	CCTCAGC	1 cut(s)	769
BbvI	GCAGC	3 cut(s)	532, 610, 760
BccI	CCATC	1 cut(s)	823
BceAI	ACGGC	2 cut(s)	88, 118
BciT130I	CCWGG	1 cut(s)	588
BcoDI	GTCTC	3 cut(s)	141, 274, 955
BfaI	CTAG	2 cut(s)	663, 729
BfmI	CTRYAG	1 cut(s)	832
BfoI	RGCGCY	1 cut(s)	326
BisI	GCNGC	9 cut(s)	23, 76, 131, 350, 353, 381, 521, 599, 774
BlsI	GCNGC	9 cut(s)	24, 77, 132, 351, 354, 382, 522, 600, 775
Bme1390I	CCNGG	1 cut(s)	588
Bme18I	GGWCC	3 cut(s)	168, 314, 388
BmgT120I	GGNCC	4 cut(s)	151, 168, 314, 388
BmiI	GGNNCC	4 cut(s)	79, 315, 333, 951
BmrFI	CCNGG	1 cut(s)	588
BmrI	ACTGGG	1 cut(s)	572
BmsI	GCATC	4 cut(s)	580, 585, 725, 928
BmuI	ACTGGG	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	509
Bpu10I	CCTNAGC	1 cut(s)	769
Bpu14I	TTCGAA	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	807
BsaBI	GATNNNNATC	1 cut(s)	909
BsaHI	GRCGYC	3 cut(s)	234, 294, 485
BsaI	GGTCTC	1 cut(s)	955
BsaJI	CCNNGG	1 cut(s)	70
BsaWI	WCCGGW	3 cut(s)	165, 790, 875
BsaXI	ACNNNNNCTCC	6 cut(s)	62, 92, 170, 200, 320, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	686, 790
Bse118I	RCCGGY	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	567
Bse8I	GATNNNNATC	1 cut(s)	909
BseAI	TCCGGA	1 cut(s)	790
BseBI	CCWGG	1 cut(s)	588
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	3 cut(s)	502, 571, 740
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	2 cut(s)	686, 790
BseMII	CTCAG	3 cut(s)	67, 135, 783
BseNI	ACTGG	1 cut(s)	567
BseRI	GAGGAG	7 cut(s)	53, 85, 101, 109, 277, 385, 430
BseSI	GKGCMC	1 cut(s)	954
BseXI	GCAGC	3 cut(s)	532, 610, 760
Bsh1236I	CGCG	1 cut(s)	355
Bsh1285I	CGRYCG	2 cut(s)	166, 181
BshFI	GGCC	2 cut(s)	5, 152
BshNI	GGYRCC	1 cut(s)	949
BshTI	ACCGGT	1 cut(s)	165
BsiEI	CGRYCG	2 cut(s)	166, 181
BsiSI	CCGG	5 cut(s)	166, 210, 326, 791, 876
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	686, 790
BsmAI	GTCTC	3 cut(s)	141, 274, 955
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	5, 152
Bso31I	GGTCTC	1 cut(s)	955
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	954
Bsp13I	TCCGGA	1 cut(s)	790
Bsp143I	GATC	3 cut(s)	7, 155, 283
BspANI	GGCC	2 cut(s)	5, 152
BspCNI	CTCAG	3 cut(s)	66, 134, 782
BspEI	TCCGGA	1 cut(s)	790
BspFNI	CGCG	1 cut(s)	355
BspLI	GGNNCC	4 cut(s)	79, 315, 333, 951
BspT104I	TTCGAA	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	949
BspTNI	GGTCTC	1 cut(s)	955
BsrBI	CCGCTC	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	567
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	3 cut(s)	7, 155, 283
BssNI	GRCGYC	3 cut(s)	234, 294, 485
BssSI	CACGAG	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	2 cut(s)	690, 934
BstACI	GRCGYC	3 cut(s)	234, 294, 485
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	4 cut(s)	53, 121, 769, 861
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	3 cut(s)	502, 571, 740
BstFNI	CGCG	1 cut(s)	355
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	2 cut(s)	325, 349
BstKTI	GATC	3 cut(s)	10, 158, 286
BstMAI	GTCTC	3 cut(s)	141, 274, 955
BstMBI	GATC	3 cut(s)	7, 155, 283
BstMCI	CGRYCG	2 cut(s)	166, 181
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 526
BstNI	CCWGG	1 cut(s)	588
BstSCI	CCNGG	1 cut(s)	586
BstSFI	CTRYAG	1 cut(s)	832
BstSLI	GKGCMC	1 cut(s)	954
BstUI	CGCG	1 cut(s)	355
BstV1I	GCAGC	3 cut(s)	532, 610, 760
BsuRI	GGCC	2 cut(s)	5, 152
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	502, 571, 740
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	150
CaiI	CAGNNNCTG	2 cut(s)	454, 941
CfoI	GCGC	2 cut(s)	325, 349
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	4 cut(s)	151, 168, 314, 388
CpoI	CGGWCCG	1 cut(s)	168
CseI	GACGC	2 cut(s)	242, 474
CsiI	ACCWGGT	1 cut(s)	586
Csp6I	GTAC	3 cut(s)	13, 217, 536
CspAI	ACCGGT	1 cut(s)	165
CspI	CGGWCCG	1 cut(s)	168
CviAII	CATG	1 cut(s)	577
CviQI	GTAC	3 cut(s)	13, 217, 536
DdeI	CTNAG	4 cut(s)	53, 121, 769, 861
DpnI	GATC	3 cut(s)	9, 157, 285
DpnII	GATC	3 cut(s)	7, 155, 283
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	690, 934
EarI	CTCTTC	2 cut(s)	690, 934
EciI	GGCGGA	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	955
Eco47I	GGWCC	3 cut(s)	168, 314, 388
Eco57I	CTGAAG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	1 cut(s)	580
FaiI	YATR	9 cut(s)	393, 578, 593, 618, 620, 720, 764, 786, 973
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	1 cut(s)	576
FauI	CCCGC	2 cut(s)	135, 206
FauNDI	CATATG	1 cut(s)	618
Fnu4HI	GCNGC	9 cut(s)	23, 76, 131, 350, 353, 381, 521, 599, 774
FokI	GGATG	3 cut(s)	509, 558, 747
Fsp4HI	GCNGC	9 cut(s)	23, 76, 131, 350, 353, 381, 521, 599, 774
FspBI	CTAG	2 cut(s)	663, 729
GlaI	GCGC	2 cut(s)	324, 348
GluI	GCNGC	9 cut(s)	23, 76, 131, 350, 353, 381, 521, 599, 774
GsuI	CTGGAG	1 cut(s)	509
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	2 cut(s)	5, 152
HapII	CCGG	5 cut(s)	166, 210, 326, 791, 876
HgaI	GACGC	2 cut(s)	242, 474
HhaI	GCGC	2 cut(s)	325, 349
Hin1I	GRCGYC	3 cut(s)	234, 294, 485
Hin1II	CATG	1 cut(s)	580
Hin6I	GCGC	2 cut(s)	323, 347
HinP1I	GCGC	2 cut(s)	323, 347
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HindIII	AAGCTT	3 cut(s)	441, 795, 825
HinfI	GANTC	8 cut(s)	29, 173, 206, 227, 267, 457, 676, 905
HpaI	GTTAAC	1 cut(s)	546
HpaII	CCGG	5 cut(s)	166, 210, 326, 791, 876
HphI	GGTGA	3 cut(s)	302, 890, 896
Hpy166II	GTNNAC	3 cut(s)	226, 546, 887
Hpy188III	TCNNGA	3 cut(s)	140, 317, 791
Hpy8I	GTNNAC	3 cut(s)	226, 546, 887
Hpy99I	CGWCG	2 cut(s)	236, 277
HpyAV	CCTTC	4 cut(s)	94, 405, 632, 875
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	6 cut(s)	448, 571, 598, 709, 738, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 526
HpyF3I	CTNAG	4 cut(s)	53, 121, 769, 861
HpySE526I	ACGT	1 cut(s)	294
Hsp92I	GRCGYC	3 cut(s)	234, 294, 485
Hsp92II	CATG	1 cut(s)	580
HspAI	GCGC	2 cut(s)	323, 347
Kpn2I	TCCGGA	1 cut(s)	790
KspAI	GTTAAC	1 cut(s)	546
Kzo9I	GATC	3 cut(s)	7, 155, 283
LmnI	GCTCC	3 cut(s)	83, 372, 528
Lsp1109I	GCAGC	3 cut(s)	532, 610, 760
LweI	GCATC	4 cut(s)	580, 585, 725, 928
MabI	ACCWGGT	1 cut(s)	586
MaeI	CTAG	2 cut(s)	663, 729
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	3 cut(s)	290, 302, 644
MalI	GATC	3 cut(s)	9, 157, 285
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	3 cut(s)	7, 155, 283
MboII	GAAGA	7 cut(s)	47, 259, 262, 265, 707, 849, 921
MfeI	CAATTG	1 cut(s)	504
MhlI	GDGCHC	1 cut(s)	954
MluCI	AATT	4 cut(s)	196, 463, 504, 898
MlyI	GAGTC	6 cut(s)	23, 167, 200, 221, 276, 685
MmeI	TCCRAC	8 cut(s)	69, 195, 201, 213, 228, 255, 255, 381
MroI	TCCGGA	1 cut(s)	790
MseI	TTAA	2 cut(s)	426, 545
MspA1I	CMGCKG	2 cut(s)	300, 773
MspI	CCGG	5 cut(s)	166, 210, 326, 791, 876
MspR9I	CCNGG	1 cut(s)	588
MunI	CAATTG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	588
MvnI	CGCG	1 cut(s)	355
MwoI	GCNNNNNNNGC	2 cut(s)	158, 526
NdeI	CATATG	1 cut(s)	618
NdeII	GATC	3 cut(s)	7, 155, 283
NlaIII	CATG	1 cut(s)	580
NlaIV	GGNNCC	4 cut(s)	79, 315, 333, 951
NmuCI	GTSAC	2 cut(s)	290, 302
NspV	TTCGAA	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 482
PfeI	GAWTC	2 cut(s)	457, 905
PflMI	CCANNNNNTGG	1 cut(s)	686
PinAI	ACCGGT	1 cut(s)	165
PkrI	GCNGC	9 cut(s)	24, 77, 132, 351, 354, 382, 522, 600, 775
PleI	GAGTC	6 cut(s)	23, 167, 200, 221, 275, 684
PpsI	GAGTC	6 cut(s)	23, 167, 200, 221, 275, 684
PpuMI	RGGWCCY	1 cut(s)	314
PshBI	ATTAAT	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	4 cut(s)	79, 315, 333, 951
PspPI	GGNCC	4 cut(s)	151, 168, 314, 388
PspPPI	RGGWCCY	1 cut(s)	314
PstNI	CAGNNNCTG	2 cut(s)	454, 941
PvuII	CAGCTG	2 cut(s)	300, 773
RsaI	GTAC	3 cut(s)	14, 218, 537
RsaNI	GTAC	3 cut(s)	13, 217, 536
Rsr2I	CGGWCCG	1 cut(s)	168
RsrII	CGGWCCG	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	426, 545
SatI	GCNGC	9 cut(s)	23, 76, 131, 350, 353, 381, 521, 599, 774
Sau3AI	GATC	3 cut(s)	7, 155, 283
Sau96I	GGNCC	4 cut(s)	151, 168, 314, 388
SchI	GAGTC	6 cut(s)	23, 167, 200, 221, 276, 685
ScrFI	CCNGG	1 cut(s)	588
SduI	GDGCHC	1 cut(s)	954
SexAI	ACCWGGT	1 cut(s)	586
SfaNI	GCATC	4 cut(s)	580, 585, 725, 928
SfcI	CTRYAG	1 cut(s)	832
SfuI	TTCGAA	1 cut(s)	245
SinI	GGWCC	3 cut(s)	168, 314, 388
SmlI	CTYRAG	1 cut(s)	822
SmoI	CTYRAG	1 cut(s)	822
Sse9I	AATT	4 cut(s)	196, 463, 504, 898
SspMI	CTAG	2 cut(s)	663, 729
StyD4I	CCNGG	1 cut(s)	586
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	245
TasI	AATT	4 cut(s)	196, 463, 504, 898
TatI	WGTACW	1 cut(s)	535
TauI	GCSGC	6 cut(s)	25, 78, 133, 352, 355, 383
TfiI	GAWTC	2 cut(s)	457, 905
Tru1I	TTAA	2 cut(s)	426, 545
Tru9I	TTAA	2 cut(s)	426, 545
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	2 cut(s)	290, 302
TseI	GCWGC	3 cut(s)	520, 598, 773
Tsp45I	GTSAC	2 cut(s)	290, 302
TspDTI	ATGAA	4 cut(s)	452, 513, 789, 921
TspGWI	ACGGA	3 cut(s)	30, 324, 491
TspRI	CASTG	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	686
VpaK11BI	GGWCC	3 cut(s)	168, 314, 388
VspI	ATTAAT	1 cut(s)	426
XapI	RAATTY	1 cut(s)	898
XspI	CTAG	2 cut(s)	663, 729
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.