Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0012416

Physical Location & Seq

Genomic Coordinates Reverse (-)

65086972 .. 65090835

Gene Structure 3864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G041380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCGGATCTGTACGGAACGCCGCCGGACTCGGAAGAAATCTCCAACATTCTCAGCCACCTCCTCCACGGCGGCTCCTCCTCCTCTTCCTGCGGGGCGCCCTTCAAGCCCGCCACTTACATGCACCTACTCAACTCCTCCTCCTCCTCAGTGCCGCCGCCGCCTCACGAGCATCCTCAATTGTTGGCCCGATCGGCGGACCGGCCCGACTCCGACCGCCCCTCTGACTTCAACTTCTCCGATTCCGGCGGCGGGTATTTCATGGACTCCGACGCCAACACTTCAAAGAAGGGGGGGAGGAGAGTTTCGTCGGAGAATGATCTTGGTGACGTCAGCTGTGACAGTGAGGGTCCTGAAGCGCCGGAGGTTCCATTAAACGCAGCTCCGCCGCGTAGTTTGTCCAAGAGAAGCAGAGCGGCGGAGGTCCATAACTTGTCGGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAAATGAAAGCTTTGCAGAACCTGATTCCAAATTCTAACAAGACGGATAAGGCTTCGATGCTGGATGAAGCAATTGAGTATTTGAAGCAGCTCCAGCTTCAAGTACAGATGTTAACGATGAGAAATGGACTGGGTTTGCATCCCATGTGCTTACCAGGAATGATGCAGCCTGTGCAGTTGCCTCATATGGCATTGGGCTTTGACGAAGGAAGTAACAAAGTTCCAAAGTCTAGCAGAGGAATGAGCCCATTTTTTGGTAGTGAAGAAAACTCAATGCAATCAGCTTATAATATTTCCAGTGGATGCACAATCTTGAATCAGCCAATGGTCGTACCCTCGGCTGCAAATGTCCCTACTTTGGAAGCCTCATTTGTTTTTGAACCATCGACTCAAGCTTACTACAGACCCTTCTTTGCTGCCACATCTTCTAAGGGGAATGGTAGTTCCGTAATAAATGTAGGAAGGAGGGGTTTTTATAAGGAGGCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

319

Amino Acids

34.52

Weight (kDa)

6.71

Isoelectric Point (pI)

78.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	141 - 188	4.3e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	147 - 192	4e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67110 AT5G67110 AT5G67110
fragaria_vesca	FvH4_2g34100
malus_domestica	MD15G1079800.v1.1
prunus_persica	Prupe.1G432800_v2.0.a1
pyrus_communis	pycom08g07960 pycom15g07430
rosa_chinensis	RchiOBHm_Chr6g0308251
rosa_laevigata	RLG00000010654
rosa_multiflora	Rmu_sc0012549.1_g000001 Rmu_ssc0000355.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160320
rosa_rugosa	Rorug06G0365400
rosa_samantha	Rh6AG474400 Rh6BG485100 Rh6CG490100 Rh6DG476500
rosa_wichuraiana	Rw6G041380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	756, 945
AatII	GACGTC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	97
AccB7I	CCANNNNNTGG	1 cut(s)	722
AccBSI	CCGCTC	1 cut(s)	416
AccII	CGCG	1 cut(s)	391
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	499
AcuI	CTGAAG	1 cut(s)	375
AcyI	GRCGYC	3 cut(s)	98, 273, 330
AfaI	GTAC	3 cut(s)	14, 573, 801
AfiI	CCNNNNNNNGG	4 cut(s)	196, 252, 722, 826
AgsI	TTSAA	7 cut(s)	106, 232, 285, 553, 569, 784, 848
AjnI	CCWGG	1 cut(s)	622
AloI	GAACNNNNNNTCC	2 cut(s)	895, 927
AluBI	AGCT	7 cut(s)	336, 383, 479, 559, 565, 752, 863
AluI	AGCT	7 cut(s)	336, 383, 479, 559, 565, 752, 863
AlwI	GGATC	1 cut(s)	15
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	3 cut(s)	186, 203, 951
ApeKI	GCWGC	5 cut(s)	380, 556, 634, 809, 884
ApoI	RAATTY	1 cut(s)	499
AseI	ATTAAT	1 cut(s)	462
AspLEI	GCGC	2 cut(s)	100, 361
AspS9I	GGNCC	5 cut(s)	187, 199, 204, 350, 424
AsuHPI	GGTGA	1 cut(s)	338
AvaII	GGWCC	3 cut(s)	199, 350, 424
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	716
BauI	CACGAG	1 cut(s)	167
BbvI	GCAGC	5 cut(s)	392, 568, 646, 796, 871
BccI	CCATC	1 cut(s)	859
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	624
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	1 cut(s)	868
BfoI	RGCGCY	2 cut(s)	101, 362
BglI	GCCNNNNNGGC	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	624
Bme18I	GGWCC	3 cut(s)	199, 350, 424
BmgT120I	GGNCC	5 cut(s)	187, 199, 204, 350, 424
BmiI	GGNNCC	4 cut(s)	76, 99, 351, 369
BmrFI	CCNGG	1 cut(s)	624
BmrI	ACTGGG	1 cut(s)	608
BmsI	GCATC	5 cut(s)	181, 516, 616, 621, 761
BmuI	ACTGGG	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	843
BsaHI	GRCGYC	3 cut(s)	98, 273, 330
BsaJI	CCNNGG	2 cut(s)	67, 804
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 125, 155
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 252, 722, 826
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	2 cut(s)	603, 765
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	2 cut(s)	67, 804
BseGI	GGATG	4 cut(s)	172, 538, 607, 776
BseLI	CCNNNNNNNGG	4 cut(s)	196, 252, 722, 826
BseMII	CTCAG	2 cut(s)	67, 162
BseNI	ACTGG	2 cut(s)	603, 765
BseXI	GCAGC	5 cut(s)	392, 568, 646, 796, 871
BsgI	GTGCAG	1 cut(s)	662
Bsh1236I	CGCG	1 cut(s)	391
Bsh1285I	CGRYCG	2 cut(s)	194, 217
BshFI	GGCC	3 cut(s)	188, 205, 953
BshNI	GGYRCC	1 cut(s)	97
BsiEI	CGRYCG	2 cut(s)	194, 217
BsiSI	CCGG	4 cut(s)	26, 202, 246, 362
BslFI	GGGAC	1 cut(s)	803
BslI	CCNNNNNNNGG	4 cut(s)	196, 252, 722, 826
BsmFI	GGGAC	1 cut(s)	803
BsnI	GGCC	3 cut(s)	188, 205, 953
Bsp1286I	GDGCHC	1 cut(s)	716
Bsp143I	GATC	3 cut(s)	7, 191, 319
BspANI	GGCC	3 cut(s)	188, 205, 953
BspCNI	CTCAG	2 cut(s)	66, 161
BspFNI	CGCG	1 cut(s)	391
BspLI	GGNNCC	4 cut(s)	76, 99, 351, 369
BspPI	GGATC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	603, 765
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	67, 804
BssMI	GATC	3 cut(s)	7, 191, 319
BssNI	GRCGYC	3 cut(s)	98, 273, 330
BssSI	CACGAG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	91
BstACI	GRCGYC	3 cut(s)	98, 273, 330
BstAPI	GCANNNNNTGC	1 cut(s)	640
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	53, 148, 897
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	4 cut(s)	172, 538, 607, 776
BstFNI	CGCG	1 cut(s)	391
BstH2I	RGCGCY	2 cut(s)	101, 362
BstHHI	GCGC	2 cut(s)	100, 361
BstKTI	GATC	3 cut(s)	10, 194, 322
BstMBI	GATC	3 cut(s)	7, 191, 319
BstMCI	CGRYCG	2 cut(s)	194, 217
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 160, 169, 194, 562, 640
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	622
BstSFI	CTRYAG	1 cut(s)	868
BstUI	CGCG	1 cut(s)	391
BstV1I	GCAGC	5 cut(s)	392, 568, 646, 796, 871
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	188, 205, 953
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	4 cut(s)	172, 538, 607, 776
BtsIMutI	CAGTG	3 cut(s)	156, 349, 772
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	490
CfoI	GCGC	2 cut(s)	100, 361
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	5 cut(s)	187, 199, 204, 350, 424
CpoI	CGGWCCG	1 cut(s)	199
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	3 cut(s)	13, 572, 800
CspI	CGGWCCG	1 cut(s)	199
CviAII	CATG	3 cut(s)	121, 262, 613
CviQI	GTAC	3 cut(s)	13, 572, 800
DdeI	CTNAG	3 cut(s)	53, 148, 897
DinI	GGCGCC	1 cut(s)	99
DpnI	GATC	3 cut(s)	9, 193, 321
DpnII	GATC	3 cut(s)	7, 191, 319
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
EciI	GGCGGA	4 cut(s)	20, 212, 375, 434
Eco24I	GRGCYC	1 cut(s)	716
Eco47I	GGWCC	3 cut(s)	199, 350, 424
Eco57I	CTGAAG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	622
EcoT38I	GRGCYC	1 cut(s)	716
EgeI	GGCGCC	1 cut(s)	99
EheI	GGCGCC	1 cut(s)	99
FaeI	CATG	3 cut(s)	124, 265, 616
FaiI	YATR	8 cut(s)	122, 263, 429, 614, 654, 656, 756, 945
FaqI	GGGAC	1 cut(s)	803
FatI	CATG	3 cut(s)	120, 261, 612
FauI	CCCGC	3 cut(s)	86, 118, 245
FauNDI	CATATG	1 cut(s)	654
FokI	GGATG	4 cut(s)	159, 545, 594, 783
FriOI	GRGCYC	1 cut(s)	716
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	2 cut(s)	99, 360
GsuI	CTGGAG	1 cut(s)	545
HaeII	RGCGCY	2 cut(s)	101, 362
HaeIII	GGCC	3 cut(s)	188, 205, 953
HapII	CCGG	4 cut(s)	26, 202, 246, 362
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	2 cut(s)	100, 361
Hin1I	GRCGYC	3 cut(s)	98, 273, 330
Hin1II	CATG	3 cut(s)	124, 265, 616
Hin6I	GCGC	2 cut(s)	98, 359
HinP1I	GCGC	2 cut(s)	98, 359
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HindIII	AAGCTT	2 cut(s)	477, 861
HinfI	GANTC	7 cut(s)	29, 209, 242, 266, 493, 784, 856
HpaI	GTTAAC	1 cut(s)	582
HpaII	CCGG	4 cut(s)	26, 202, 246, 362
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	582
Hpy188I	TCNGA	7 cut(s)	34, 214, 226, 241, 271, 313, 439
Hpy188III	TCNNGA	3 cut(s)	167, 353, 781
Hpy8I	GTNNAC	1 cut(s)	582
Hpy99I	CGWCG	2 cut(s)	275, 313
HpyAV	CCTTC	6 cut(s)	112, 283, 441, 668, 886, 924
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	8 cut(s)	124, 484, 607, 634, 643, 745, 774, 812
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 160, 169, 194, 562, 640
HpyF3I	CTNAG	3 cut(s)	53, 148, 897
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	3 cut(s)	98, 273, 330
Hsp92II	CATG	3 cut(s)	124, 265, 616
HspAI	GCGC	2 cut(s)	98, 359
KasI	GGCGCC	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	582
Kzo9I	GATC	3 cut(s)	7, 191, 319
LmnI	GCTCC	3 cut(s)	80, 388, 564
Lsp1109I	GCAGC	5 cut(s)	392, 568, 646, 796, 871
LweI	GCATC	5 cut(s)	181, 516, 616, 621, 761
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	3 cut(s)	326, 338, 680
MalI	GATC	3 cut(s)	9, 193, 321
MbiI	CCGCTC	1 cut(s)	416
MboI	GATC	3 cut(s)	7, 191, 319
MboII	GAAGA	4 cut(s)	47, 78, 743, 885
MfeI	CAATTG	2 cut(s)	179, 540
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	716
MluCI	AATT	3 cut(s)	179, 499, 540
Mly113I	GGCGCC	1 cut(s)	98
MlyI	GAGTC	4 cut(s)	23, 203, 260, 850
MmeI	TCCRAC	5 cut(s)	69, 237, 291, 294, 417
MseI	TTAA	3 cut(s)	374, 462, 581
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	4 cut(s)	26, 202, 246, 362
MspR9I	CCNGG	1 cut(s)	624
MunI	CAATTG	2 cut(s)	179, 540
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	1 cut(s)	391
MwoI	GCNNNNNNNGC	6 cut(s)	106, 160, 169, 194, 562, 640
NarI	GGCGCC	1 cut(s)	98
NdeI	CATATG	1 cut(s)	654
NdeII	GATC	3 cut(s)	7, 191, 319
NlaIII	CATG	3 cut(s)	124, 265, 616
NlaIV	GGNNCC	4 cut(s)	76, 99, 351, 369
NmeAIII	GCCGAG	1 cut(s)	785
NmuCI	GTSAC	2 cut(s)	326, 338
NspI	RCATGY	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	242, 493, 784
PflMI	CCANNNNNTGG	1 cut(s)	722
Ple19I	CGATCG	1 cut(s)	194
PleI	GAGTC	4 cut(s)	23, 203, 260, 850
PluTI	GGCGCC	1 cut(s)	101
PpsI	GAGTC	4 cut(s)	23, 203, 260, 850
PpuMI	RGGWCCY	1 cut(s)	350
PshBI	ATTAAT	1 cut(s)	462
PsiI	TTATAA	2 cut(s)	756, 945
Psp5II	RGGWCCY	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	4 cut(s)	76, 99, 351, 369
PspPI	GGNCC	5 cut(s)	187, 199, 204, 350, 424
PspPPI	RGGWCCY	1 cut(s)	350
PstNI	CAGNNNCTG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	7
PvuI	CGATCG	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	336
RsaI	GTAC	3 cut(s)	14, 573, 801
RsaNI	GTAC	3 cut(s)	13, 572, 800
RseI	CAYNNNNRTG	1 cut(s)	119
Rsr2I	CGGWCCG	1 cut(s)	199
RsrII	CGGWCCG	1 cut(s)	199
SaqAI	TTAA	3 cut(s)	374, 462, 581
Sau3AI	GATC	3 cut(s)	7, 191, 319
Sau96I	GGNCC	5 cut(s)	187, 199, 204, 350, 424
SchI	GAGTC	4 cut(s)	23, 203, 260, 850
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	1 cut(s)	716
SfaNI	GCATC	5 cut(s)	181, 516, 616, 621, 761
SfcI	CTRYAG	1 cut(s)	868
SfoI	GGCGCC	1 cut(s)	99
SinI	GGWCC	3 cut(s)	199, 350, 424
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	858
SmoI	CTYRAG	1 cut(s)	858
Sse9I	AATT	3 cut(s)	179, 499, 540
SspDI	GGCGCC	1 cut(s)	97
SspI	AATATT	1 cut(s)	760
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	622
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	2 cut(s)	524, 854
TasI	AATT	3 cut(s)	179, 499, 540
TatI	WGTACW	1 cut(s)	571
TauI	GCSGC	8 cut(s)	25, 75, 157, 160, 163, 252, 391, 419
TfiI	GAWTC	3 cut(s)	242, 493, 784
Tru1I	TTAA	3 cut(s)	374, 462, 581
Tru9I	TTAA	3 cut(s)	374, 462, 581
TscAI	CASTG	3 cut(s)	156, 349, 772
TseFI	GTSAC	2 cut(s)	326, 338
TseI	GCWGC	5 cut(s)	380, 556, 634, 809, 884
Tsp45I	GTSAC	2 cut(s)	326, 338
TspDTI	ATGAA	3 cut(s)	250, 488, 549
TspGWI	ACGGA	3 cut(s)	30, 527, 904
TspRI	CASTG	3 cut(s)	156, 349, 772
Van91I	CCANNNNNTGG	1 cut(s)	722
VpaK11BI	GGWCC	3 cut(s)	199, 350, 424
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	1 cut(s)	499
XceI	RCATGY	1 cut(s)	124
XspI	CTAG	1 cut(s)	699
ZraI	GACGTC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.