Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012416

Physical Location & Seq

Genomic Coordinates Forward (+)

3307856 .. 3310818

Gene Structure 2963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTCAAAACGGCACAGAAAAAAAGAGAGAGAGAGAGAAAGGAGAAAAACGGAAACCCAAACTCCCCACAGAAAAAGGCAGCAGCTAGCGTCTTCTTCAATCTTGCAAACTCTCTCGATCATGGCGGATCTGTACGGAACGCCGCCGGACTCGGAAGAAATCTCCCACATTCTCAGCCACCTCCTCCACGGCGGCGGCTCCTCCTCTTCCTGCGGGGCGCCCTTCAAGCCCGCCACTTACATGCACCTACTCAACTCCTCCTCAGTGCCGCCGCCTCCGCCTCACGAGCATCCTCAATTGTTGCCCCGATCGGCGGACCTGTCCGACTCCGACCGCCCCTCTGATTTCAACTTCTCCGATTCCGGCGGGTATTTCATGGACTCCGACGCCAACACTTCAAAGAAGGTTTCGTCGGAGAATGATCTTGGTGACGTCAGCTGTGACAGTGAGGGTCCTGAAGCGCCGGAGGTTCCATCAAACCCAGCTCCGCCGCGTAGTTTGTCCAAGAGAAGCAGAGCGGCGGAGGTCCATAACTTGTCGGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAAATGAAAGCTTTGCAGAACCTGATTCCAAATTCTAACAAGACGGATAAGGCTTCGATGCTGGATGAAGCAATTGAGTATTTGAAGCAGCTCCAGCTTCAAGTACAGATGTTAACGATGAGAAATGGACTGGGTTTGCATCCCATGTGCTTACCAGGAATGATGCAGCCTGTGCAGTTGCCTCATATGGCATTGAGCTTTGACGAAGGAAGTAACAGAGTTCCAAAGTCTAGCAGAGGAAGGAGCCCATTTTTTGGTAGTGAAGAAAACTCAATGCAATCAGCTTATAATATTTCCAGTGGATGCACAATCTTGAATCAGCCAATGGTCGTACCCTCAGCTGCAAATGTCCCTACTTTGGAAGCCTCATTCGTCTTTGAACCATCGACTCAAGCTTACTACAGACCCTTCTTTGCTGCCACATCTTCTAAGGTGACTCTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

338

Amino Acids

37.27

Weight (kDa)

8.59

Isoelectric Point (pI)

79.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	175 - 222	4.7e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	181 - 226	4.4e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67110 AT5G67110 AT5G67110
fragaria_vesca	FvH4_2g34100
malus_domestica	MD15G1079800.v1.1
prunus_persica	Prupe.1G432800_v2.0.a1
pyrus_communis	pycom08g07960 pycom15g07430
rosa_chinensis	RchiOBHm_Chr6g0308251
rosa_laevigata	RLG00000010654
rosa_multiflora	Rmu_sc0012549.1_g000001 Rmu_ssc0000355.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160320
rosa_rugosa	Rorug06G0365400
rosa_samantha	Rh6AG474400 Rh6BG485100 Rh6CG490100 Rh6DG476500
rosa_wichuraiana	Rw6G041380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	858
AatII	GACGTC	1 cut(s)	435
AccB1I	GGYRCC	1 cut(s)	217
AccB7I	CCANNNNNTGG	1 cut(s)	824
AccBSI	CCGCTC	1 cut(s)	518
AccII	CGCG	1 cut(s)	493
AclWI	GGATC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	601
AcuI	CTGAAG	1 cut(s)	477
AcyI	GRCGYC	3 cut(s)	218, 387, 432
AfaI	GTAC	3 cut(s)	134, 675, 903
AfiI	CCNNNNNNNGG	3 cut(s)	313, 824, 928
AgsI	TTSAA	8 cut(s)	99, 226, 349, 399, 655, 671, 886, 950
AjnI	CCWGG	1 cut(s)	724
AlwI	GGATC	1 cut(s)	135
AlwNI	CAGNNNCTG	1 cut(s)	592
ApeKI	GCWGC	6 cut(s)	79, 82, 658, 736, 911, 986
ApoI	RAATTY	1 cut(s)	601
AseI	ATTAAT	1 cut(s)	564
AspLEI	GCGC	2 cut(s)	220, 463
AspS9I	GGNCC	3 cut(s)	316, 452, 526
AsuHPI	GGTGA	2 cut(s)	440, 1015
AsuNHI	GCTAGC	1 cut(s)	85
AvaII	GGWCC	3 cut(s)	316, 452, 526
BanI	GGYRCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	818
BauI	CACGAG	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	84
BbvCI	CCTCAGC	1 cut(s)	907
BbvI	GCAGC	6 cut(s)	91, 94, 670, 748, 898, 973
BccI	CCATC	2 cut(s)	481, 961
BceAI	ACGGC	2 cut(s)	26, 205
BciT130I	CCWGG	1 cut(s)	726
BfaI	CTAG	2 cut(s)	86, 801
BfmI	CTRYAG	1 cut(s)	970
BfoI	RGCGCY	2 cut(s)	221, 464
Bme1390I	CCNGG	1 cut(s)	726
Bme18I	GGWCC	3 cut(s)	316, 452, 526
BmgT120I	GGNCC	3 cut(s)	316, 452, 526
BmiI	GGNNCC	5 cut(s)	199, 219, 453, 471, 815
BmrFI	CCNGG	1 cut(s)	726
BmrI	ACTGGG	1 cut(s)	710
BmsI	GCATC	5 cut(s)	298, 618, 718, 723, 863
BmtI	GCTAGC	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	710
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	647
Bpu10I	CCTNAGC	1 cut(s)	907
BpuEI	CTTGAG	1 cut(s)	945
BsaHI	GRCGYC	3 cut(s)	218, 387, 432
BsaJI	CCNNGG	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 824, 928
Bse1I	ACTGG	2 cut(s)	705, 867
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	4 cut(s)	289, 640, 709, 878
BseLI	CCNNNNNNNGG	3 cut(s)	313, 824, 928
BseMII	CTCAG	3 cut(s)	187, 276, 921
BseNI	ACTGG	2 cut(s)	705, 867
BseRI	GAGGAG	6 cut(s)	173, 190, 193, 247, 250, 568
BseXI	GCAGC	6 cut(s)	91, 94, 670, 748, 898, 973
BseYI	CCCAGC	1 cut(s)	481
BsgI	GTGCAG	1 cut(s)	764
Bsh1236I	CGCG	1 cut(s)	493
Bsh1285I	CGRYCG	2 cut(s)	311, 334
BshNI	GGYRCC	1 cut(s)	217
BsiEI	CGRYCG	2 cut(s)	311, 334
BsiSI	CCGG	3 cut(s)	146, 363, 464
BslFI	GGGAC	1 cut(s)	905
BslI	CCNNNNNNNGG	3 cut(s)	313, 824, 928
BsmFI	GGGAC	1 cut(s)	905
Bsp1286I	GDGCHC	1 cut(s)	818
Bsp143I	GATC	4 cut(s)	117, 127, 308, 421
BspCNI	CTCAG	3 cut(s)	186, 275, 920
BspFNI	CGCG	1 cut(s)	493
BspLI	GGNNCC	5 cut(s)	199, 219, 453, 471, 815
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	217
BsrBI	CCGCTC	1 cut(s)	518
BsrI	ACTGG	2 cut(s)	705, 867
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	4 cut(s)	117, 127, 308, 421
BssNI	GRCGYC	3 cut(s)	218, 387, 432
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	211
BstACI	GRCGYC	3 cut(s)	218, 387, 432
BstAPI	GCANNNNNTGC	1 cut(s)	742
BstC8I	GCNNGC	2 cut(s)	87, 231
BstDEI	CTNAG	4 cut(s)	173, 262, 907, 999
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	4 cut(s)	289, 640, 709, 878
BstFNI	CGCG	1 cut(s)	493
BstH2I	RGCGCY	2 cut(s)	221, 464
BstHHI	GCGC	2 cut(s)	220, 463
BstKTI	GATC	4 cut(s)	120, 130, 311, 424
BstMBI	GATC	4 cut(s)	117, 127, 308, 421
BstMCI	CGRYCG	2 cut(s)	311, 334
BstMWI	GCNNNNNNNGC	5 cut(s)	226, 277, 286, 664, 742
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	724
BstSFI	CTRYAG	1 cut(s)	970
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	6 cut(s)	91, 94, 670, 748, 898, 973
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	4 cut(s)	289, 640, 709, 878
BtsIMutI	CAGTG	3 cut(s)	270, 451, 874
Cac8I	GCNNGC	2 cut(s)	87, 231
CaiI	CAGNNNCTG	1 cut(s)	592
CfoI	GCGC	2 cut(s)	220, 463
Cfr13I	GGNCC	3 cut(s)	316, 452, 526
CseI	GACGC	2 cut(s)	78, 395
Csp6I	GTAC	3 cut(s)	133, 674, 902
CviAII	CATG	5 cut(s)	121, 241, 376, 715, 1014
CviQI	GTAC	3 cut(s)	133, 674, 902
DdeI	CTNAG	4 cut(s)	173, 262, 907, 999
DinI	GGCGCC	1 cut(s)	219
DpnI	GATC	4 cut(s)	119, 129, 310, 423
DpnII	GATC	4 cut(s)	117, 127, 308, 421
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
EciI	GGCGGA	5 cut(s)	140, 267, 329, 477, 536
Eco24I	GRGCYC	1 cut(s)	818
Eco47I	GGWCC	3 cut(s)	316, 452, 526
Eco57I	CTGAAG	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	818
EgeI	GGCGCC	1 cut(s)	219
EheI	GGCGCC	1 cut(s)	219
FaeI	CATG	5 cut(s)	124, 244, 379, 718, 1017
FaiI	YATR	9 cut(s)	122, 242, 377, 531, 716, 756, 758, 858, 1015
FaqI	GGGAC	1 cut(s)	905
FatI	CATG	5 cut(s)	120, 240, 375, 714, 1013
FauI	CCCGC	3 cut(s)	206, 238, 359
FauNDI	CATATG	1 cut(s)	756
FokI	GGATG	4 cut(s)	276, 647, 696, 885
FriOI	GRGCYC	1 cut(s)	818
FspBI	CTAG	2 cut(s)	86, 801
GlaI	GCGC	2 cut(s)	219, 462
GsaI	CCCAGC	1 cut(s)	485
GsuI	CTGGAG	1 cut(s)	647
HaeII	RGCGCY	2 cut(s)	221, 464
HapII	CCGG	3 cut(s)	146, 363, 464
HgaI	GACGC	2 cut(s)	78, 395
HhaI	GCGC	2 cut(s)	220, 463
Hin1I	GRCGYC	3 cut(s)	218, 387, 432
Hin1II	CATG	5 cut(s)	124, 244, 379, 718, 1017
Hin6I	GCGC	2 cut(s)	218, 461
HinP1I	GCGC	2 cut(s)	218, 461
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HindIII	AAGCTT	2 cut(s)	579, 963
HinfI	GANTC	8 cut(s)	149, 326, 359, 380, 595, 886, 958, 1006
HpaI	GTTAAC	1 cut(s)	684
HpaII	CCGG	3 cut(s)	146, 363, 464
HphI	GGTGA	2 cut(s)	440, 1015
Hpy166II	GTNNAC	1 cut(s)	684
Hpy188I	TCNGA	8 cut(s)	154, 325, 331, 343, 358, 385, 415, 541
Hpy188III	TCNNGA	4 cut(s)	115, 284, 455, 883
Hpy8I	GTNNAC	1 cut(s)	684
Hpy99I	CGWCG	2 cut(s)	389, 415
HpyAV	CCTTC	6 cut(s)	232, 397, 543, 770, 804, 988
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	9 cut(s)	106, 244, 586, 709, 736, 745, 847, 876, 914
HpyF10VI	GCNNNNNNNGC	5 cut(s)	226, 277, 286, 664, 742
HpyF3I	CTNAG	4 cut(s)	173, 262, 907, 999
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	3 cut(s)	218, 387, 432
Hsp92II	CATG	5 cut(s)	124, 244, 379, 718, 1017
HspAI	GCGC	2 cut(s)	218, 461
KasI	GGCGCC	1 cut(s)	217
KspAI	GTTAAC	1 cut(s)	684
Kzo9I	GATC	4 cut(s)	117, 127, 308, 421
LmnI	GCTCC	4 cut(s)	203, 490, 666, 813
Lsp1109I	GCAGC	6 cut(s)	91, 94, 670, 748, 898, 973
LweI	GCATC	5 cut(s)	298, 618, 718, 723, 863
MaeI	CTAG	2 cut(s)	86, 801
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	4 cut(s)	428, 440, 782, 1003
MalI	GATC	4 cut(s)	119, 129, 310, 423
MbiI	CCGCTC	1 cut(s)	518
MboI	GATC	4 cut(s)	117, 127, 308, 421
MboII	GAAGA	6 cut(s)	84, 87, 167, 198, 845, 987
MfeI	CAATTG	2 cut(s)	296, 642
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	818
MluCI	AATT	3 cut(s)	296, 601, 642
Mly113I	GGCGCC	1 cut(s)	218
MlyI	GAGTC	5 cut(s)	143, 320, 374, 952, 1000
MmeI	TCCRAC	5 cut(s)	348, 354, 393, 408, 519
MseI	TTAA	2 cut(s)	564, 683
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	2 cut(s)	438, 911
MspI	CCGG	3 cut(s)	146, 363, 464
MspR9I	CCNGG	1 cut(s)	726
MunI	CAATTG	2 cut(s)	296, 642
MvaI	CCWGG	1 cut(s)	726
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	5 cut(s)	226, 277, 286, 664, 742
NarI	GGCGCC	1 cut(s)	218
NdeI	CATATG	1 cut(s)	756
NdeII	GATC	4 cut(s)	117, 127, 308, 421
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	5 cut(s)	124, 244, 379, 718, 1017
NlaIV	GGNNCC	5 cut(s)	199, 219, 453, 471, 815
NmuCI	GTSAC	3 cut(s)	428, 440, 1003
NspI	RCATGY	1 cut(s)	244
PfeI	GAWTC	3 cut(s)	359, 595, 886
PflMI	CCANNNNNTGG	1 cut(s)	824
Ple19I	CGATCG	1 cut(s)	311
PleI	GAGTC	5 cut(s)	143, 320, 374, 952, 1000
PluTI	GGCGCC	1 cut(s)	221
PpsI	GAGTC	5 cut(s)	143, 320, 374, 952, 1000
PpuMI	RGGWCCY	1 cut(s)	452
PshBI	ATTAAT	1 cut(s)	564
PsiI	TTATAA	1 cut(s)	858
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	724
PspFI	CCCAGC	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	5 cut(s)	199, 219, 453, 471, 815
PspPI	GGNCC	3 cut(s)	316, 452, 526
PspPPI	RGGWCCY	1 cut(s)	452
PstNI	CAGNNNCTG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	127
PvuI	CGATCG	1 cut(s)	311
PvuII	CAGCTG	2 cut(s)	438, 911
RsaI	GTAC	3 cut(s)	134, 675, 903
RsaNI	GTAC	3 cut(s)	133, 674, 902
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	564, 683
Sau3AI	GATC	4 cut(s)	117, 127, 308, 421
Sau96I	GGNCC	3 cut(s)	316, 452, 526
SchI	GAGTC	5 cut(s)	143, 320, 374, 952, 1000
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	1 cut(s)	818
SfaNI	GCATC	5 cut(s)	298, 618, 718, 723, 863
SfcI	CTRYAG	1 cut(s)	970
SfoI	GGCGCC	1 cut(s)	219
SinI	GGWCC	3 cut(s)	316, 452, 526
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	960
SmoI	CTYRAG	1 cut(s)	960
Sse9I	AATT	3 cut(s)	296, 601, 642
SspDI	GGCGCC	1 cut(s)	217
SspI	AATATT	1 cut(s)	862
SspMI	CTAG	2 cut(s)	86, 801
StyD4I	CCNGG	1 cut(s)	724
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	116, 626, 956
TasI	AATT	3 cut(s)	296, 601, 642
TatI	WGTACW	1 cut(s)	673
TauI	GCSGC	7 cut(s)	145, 195, 198, 271, 274, 493, 521
TfiI	GAWTC	3 cut(s)	359, 595, 886
Tru1I	TTAA	2 cut(s)	564, 683
Tru9I	TTAA	2 cut(s)	564, 683
TscAI	CASTG	3 cut(s)	270, 451, 874
TseFI	GTSAC	3 cut(s)	428, 440, 1003
TseI	GCWGC	6 cut(s)	79, 82, 658, 736, 911, 986
Tsp45I	GTSAC	3 cut(s)	428, 440, 1003
TspDTI	ATGAA	3 cut(s)	364, 590, 651
TspGWI	ACGGA	3 cut(s)	65, 150, 629
TspRI	CASTG	3 cut(s)	270, 451, 874
Van91I	CCANNNNNTGG	1 cut(s)	824
VpaK11BI	GGWCC	3 cut(s)	316, 452, 526
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	1 cut(s)	244
XspI	CTAG	2 cut(s)	86, 801
ZraI	GACGTC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.