Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012416

Physical Location & Seq

Genomic Coordinates Reverse (-)

65757034 .. 65759851

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG490100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCGGATCTGTACGGAACGCCGCCGGACTCGGAAGAAATCTCCAACATTCTCAGCCACCTCCTCCACGGCGGCGGCTCCTCCTCTTCCTGCGGGGCGCCCTTCAAGCCCTCCACTTACATGCACCTACTCAACTCCTCCTCAGTGCCGCCGCCGCCGCACGAGCATCCTCAATTGTTGCCCCGATCGGCGGACCGGTCCGACTCCGACCGCCCCTCTGACTTCAACTTCTCCGATTCCGGCGGCGGGTATTTCATGGACTCCGACGCCAACACTTCAAAGAAGGGGAGGAGAGTTCCGTCGGAGAATGATCTCGGTGACGTCAGCTGTGACAGTGAGGGTCCTGAAGCGCCGGAGGTTCCATTAAACCCAGCTCCGCCGCGTAGTTCGTCCAAGAGAAGCAGAGCGGCGGAGGTCCATAACTTGTCGGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAAATGAAAGCTTTGCAGAACCTGATTCCAAATTCTAACAAGACGGATAAGGCTTCGATGCTGGATGAAGCAATTGAGTATTTGAAGCAGCTCCAGCTTCAAGTACAGATGTTAACGATGAGAAATGGACTGGGTTTGCATCCCATGTGCTTACCAGGAATGATGCAGCCTGTGCAGTTTCCTCATATGGCATTGGGCTTTGACGAAGGAAGTAACAAAGTTCCAAAGTCTAGCAGAGGAATGAGCCCATTTTTTGGTAGTGAAGAAAACTCAATGCAATCAGCTTATAATATTTCCAGTGGATGCACAATCTTGAATCAGCCAATGGTCGTACCCTCAGCTGCAAATGTCCCTACTTTGGAAGCCTCATTCGTCTTTGAACCATCGACTCAAGCTTACTACAGACCCTTCTTTGCTGCCACATCTTCTAAGGAACTATTATTCGGTGAAGGTGAGCCGTCTTCAAAATCAGATTCCAATCGGACTGGGATAAACTCTTCATCAGATGCTGATAAGGTGTCCTCAAAGAGACCTGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

333

Amino Acids

36.09

Weight (kDa)

5.79

Isoelectric Point (pI)

79.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	138 - 185	4.6e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	144 - 189	4.3e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67110 AT5G67110 AT5G67110
fragaria_vesca	FvH4_2g34100
malus_domestica	MD15G1079800.v1.1
prunus_persica	Prupe.1G432800_v2.0.a1
pyrus_communis	pycom08g07960 pycom15g07430
rosa_chinensis	RchiOBHm_Chr6g0308251
rosa_laevigata	RLG00000010654
rosa_multiflora	Rmu_sc0012549.1_g000001 Rmu_ssc0000355.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160320
rosa_rugosa	Rorug06G0365400
rosa_samantha	Rh6AG474400 Rh6BG485100 Rh6CG490100 Rh6DG476500
rosa_wichuraiana	Rw6G041380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	747
AatII	GACGTC	1 cut(s)	324
AccB1I	GGYRCC	1 cut(s)	97
AccB7I	CCANNNNNTGG	1 cut(s)	713
AccBSI	CCGCTC	1 cut(s)	407
AccII	CGCG	1 cut(s)	382
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	3 cut(s)	98, 267, 321
AfaI	GTAC	3 cut(s)	14, 564, 792
AfiI	CCNNNNNNNGG	4 cut(s)	190, 246, 713, 817
AgeI	ACCGGT	1 cut(s)	195
AgsI	TTSAA	8 cut(s)	106, 226, 279, 544, 560, 775, 839, 924
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	8 cut(s)	327, 374, 470, 550, 556, 743, 800, 854
AluI	AGCT	8 cut(s)	327, 374, 470, 550, 556, 743, 800, 854
Alw26I	GTCTC	1 cut(s)	982
AlwI	GGATC	1 cut(s)	15
AlwNI	CAGNNNCTG	2 cut(s)	481, 968
ApeKI	GCWGC	4 cut(s)	547, 625, 800, 875
ApoI	RAATTY	1 cut(s)	490
AseI	ATTAAT	1 cut(s)	453
AsiGI	ACCGGT	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	100, 352
AspS9I	GGNCC	4 cut(s)	193, 198, 341, 415
AsuHPI	GGTGA	3 cut(s)	329, 917, 923
AvaII	GGWCC	4 cut(s)	193, 198, 341, 415
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	707
BauI	CACGAG	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	912
BbvCI	CCTCAGC	1 cut(s)	796
BbvI	GCAGC	4 cut(s)	559, 637, 787, 862
BccI	CCATC	1 cut(s)	850
BceAI	ACGGC	2 cut(s)	85, 901
BciT130I	CCWGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	982
BfaI	CTAG	1 cut(s)	690
BfmI	CTRYAG	1 cut(s)	859
BfoI	RGCGCY	2 cut(s)	101, 353
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	4 cut(s)	193, 198, 341, 415
BmgT120I	GGNCC	4 cut(s)	193, 198, 341, 415
BmiI	GGNNCC	4 cut(s)	79, 99, 342, 360
BmrFI	CCNGG	1 cut(s)	615
BmrI	ACTGGG	2 cut(s)	599, 954
BmsI	GCATC	6 cut(s)	175, 507, 607, 612, 752, 955
BmuI	ACTGGG	2 cut(s)	599, 954
BpiI	GAAGAC	1 cut(s)	912
BpmI	CTGGAG	1 cut(s)	536
Bpu10I	CCTNAGC	1 cut(s)	796
BpuEI	CTTGAG	1 cut(s)	834
BsaBI	GATNNNNATC	1 cut(s)	936
BsaHI	GRCGYC	3 cut(s)	98, 267, 321
BsaI	GGTCTC	1 cut(s)	982
BsaJI	CCNNGG	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 246, 713, 817
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	3 cut(s)	594, 756, 949
Bse8I	GATNNNNATC	1 cut(s)	936
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	4 cut(s)	166, 529, 598, 767
BseJI	GATNNNNATC	1 cut(s)	936
BseLI	CCNNNNNNNGG	4 cut(s)	190, 246, 713, 817
BseMII	CTCAG	3 cut(s)	67, 156, 810
BseNI	ACTGG	3 cut(s)	594, 756, 949
BseRI	GAGGAG	7 cut(s)	53, 70, 73, 127, 130, 304, 457
BseXI	GCAGC	4 cut(s)	559, 637, 787, 862
BseYI	CCCAGC	1 cut(s)	370
BsgI	GTGCAG	1 cut(s)	653
Bsh1236I	CGCG	1 cut(s)	382
Bsh1285I	CGRYCG	2 cut(s)	188, 211
BshNI	GGYRCC	1 cut(s)	97
BshTI	ACCGGT	1 cut(s)	195
BsiEI	CGRYCG	2 cut(s)	188, 211
BsiSI	CCGG	4 cut(s)	26, 196, 240, 353
BslFI	GGGAC	1 cut(s)	794
BslI	CCNNNNNNNGG	4 cut(s)	190, 246, 713, 817
BsmAI	GTCTC	1 cut(s)	982
BsmFI	GGGAC	1 cut(s)	794
Bso31I	GGTCTC	1 cut(s)	982
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp143I	GATC	3 cut(s)	7, 185, 310
BspCNI	CTCAG	3 cut(s)	66, 155, 809
BspFNI	CGCG	1 cut(s)	382
BspLI	GGNNCC	4 cut(s)	79, 99, 342, 360
BspPI	GGATC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	982
BsrBI	CCGCTC	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	3 cut(s)	594, 756, 949
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	3 cut(s)	7, 185, 310
BssNI	GRCGYC	3 cut(s)	98, 267, 321
BssSI	CACGAG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	2 cut(s)	91, 961
BstACI	GRCGYC	3 cut(s)	98, 267, 321
BstAPI	GCANNNNNTGC	1 cut(s)	631
BstDEI	CTNAG	4 cut(s)	53, 142, 796, 888
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	4 cut(s)	166, 529, 598, 767
BstFNI	CGCG	1 cut(s)	382
BstH2I	RGCGCY	2 cut(s)	101, 353
BstHHI	GCGC	2 cut(s)	100, 352
BstKTI	GATC	3 cut(s)	10, 188, 313
BstMAI	GTCTC	1 cut(s)	982
BstMBI	GATC	3 cut(s)	7, 185, 310
BstMCI	CGRYCG	2 cut(s)	188, 211
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 154, 157, 163, 553, 631
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	1 cut(s)	859
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	4 cut(s)	559, 637, 787, 862
BstV2I	GAAGAC	1 cut(s)	912
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	4 cut(s)	166, 529, 598, 767
BtsIMutI	CAGTG	3 cut(s)	150, 340, 763
CaiI	CAGNNNCTG	2 cut(s)	481, 968
CfoI	GCGC	2 cut(s)	100, 352
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	4 cut(s)	193, 198, 341, 415
CpoI	CGGWCCG	2 cut(s)	193, 198
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	3 cut(s)	13, 563, 791
CspAI	ACCGGT	1 cut(s)	195
CspI	CGGWCCG	2 cut(s)	193, 198
CviAII	CATG	3 cut(s)	121, 256, 604
CviQI	GTAC	3 cut(s)	13, 563, 791
DdeI	CTNAG	4 cut(s)	53, 142, 796, 888
DinI	GGCGCC	1 cut(s)	99
DpnI	GATC	3 cut(s)	9, 187, 312
DpnII	GATC	3 cut(s)	7, 185, 310
Eam1104I	CTCTTC	2 cut(s)	91, 961
EarI	CTCTTC	2 cut(s)	91, 961
EciI	GGCGGA	4 cut(s)	20, 206, 366, 425
Eco24I	GRGCYC	1 cut(s)	707
Eco31I	GGTCTC	1 cut(s)	982
Eco47I	GGWCC	4 cut(s)	193, 198, 341, 415
Eco57I	CTGAAG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	707
EgeI	GGCGCC	1 cut(s)	99
EheI	GGCGCC	1 cut(s)	99
FaeI	CATG	3 cut(s)	124, 259, 607
FaiI	YATR	8 cut(s)	122, 257, 420, 605, 645, 647, 747, 1000
FaqI	GGGAC	1 cut(s)	794
FatI	CATG	3 cut(s)	120, 255, 603
FauI	CCCGC	2 cut(s)	86, 239
FauNDI	CATATG	1 cut(s)	645
FokI	GGATG	4 cut(s)	153, 536, 585, 774
FriOI	GRGCYC	1 cut(s)	707
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	2 cut(s)	99, 351
GsaI	CCCAGC	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	536
HaeII	RGCGCY	2 cut(s)	101, 353
HapII	CCGG	4 cut(s)	26, 196, 240, 353
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	2 cut(s)	100, 352
Hin1I	GRCGYC	3 cut(s)	98, 267, 321
Hin1II	CATG	3 cut(s)	124, 259, 607
Hin6I	GCGC	2 cut(s)	98, 350
HinP1I	GCGC	2 cut(s)	98, 350
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HindIII	AAGCTT	2 cut(s)	468, 852
HinfI	GANTC	8 cut(s)	29, 203, 236, 260, 484, 775, 847, 932
HpaI	GTTAAC	1 cut(s)	573
HpaII	CCGG	4 cut(s)	26, 196, 240, 353
HphI	GGTGA	3 cut(s)	329, 917, 923
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188III	TCNNGA	2 cut(s)	344, 772
Hpy8I	GTNNAC	1 cut(s)	573
Hpy99I	CGWCG	2 cut(s)	269, 304
HpyAV	CCTTC	6 cut(s)	112, 277, 432, 659, 877, 902
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	8 cut(s)	124, 475, 598, 625, 634, 736, 765, 803
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 154, 157, 163, 553, 631
HpyF3I	CTNAG	4 cut(s)	53, 142, 796, 888
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	3 cut(s)	98, 267, 321
Hsp92II	CATG	3 cut(s)	124, 259, 607
HspAI	GCGC	2 cut(s)	98, 350
KasI	GGCGCC	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	573
Kzo9I	GATC	3 cut(s)	7, 185, 310
LmnI	GCTCC	3 cut(s)	83, 379, 555
Lsp1109I	GCAGC	4 cut(s)	559, 637, 787, 862
LweI	GCATC	6 cut(s)	175, 507, 607, 612, 752, 955
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	317, 329, 671
MalI	GATC	3 cut(s)	9, 187, 312
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	3 cut(s)	7, 185, 310
MboII	GAAGA	6 cut(s)	47, 78, 734, 876, 912, 948
MfeI	CAATTG	2 cut(s)	173, 531
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	707
MluCI	AATT	3 cut(s)	173, 490, 531
Mly113I	GGCGCC	1 cut(s)	98
MlyI	GAGTC	4 cut(s)	23, 197, 254, 841
MmeI	TCCRAC	6 cut(s)	69, 225, 231, 282, 288, 408
MseI	TTAA	3 cut(s)	365, 453, 572
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	2 cut(s)	327, 800
MspI	CCGG	4 cut(s)	26, 196, 240, 353
MspR9I	CCNGG	1 cut(s)	615
MunI	CAATTG	2 cut(s)	173, 531
MvaI	CCWGG	1 cut(s)	615
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	6 cut(s)	106, 154, 157, 163, 553, 631
NarI	GGCGCC	1 cut(s)	98
NdeI	CATATG	1 cut(s)	645
NdeII	GATC	3 cut(s)	7, 185, 310
NlaIII	CATG	3 cut(s)	124, 259, 607
NlaIV	GGNNCC	4 cut(s)	79, 99, 342, 360
NmuCI	GTSAC	2 cut(s)	317, 329
NspI	RCATGY	1 cut(s)	124
PfeI	GAWTC	4 cut(s)	236, 484, 775, 932
PflMI	CCANNNNNTGG	1 cut(s)	713
PinAI	ACCGGT	1 cut(s)	195
Ple19I	CGATCG	1 cut(s)	188
PleI	GAGTC	4 cut(s)	23, 197, 254, 841
PluTI	GGCGCC	1 cut(s)	101
PpsI	GAGTC	4 cut(s)	23, 197, 254, 841
PpuMI	RGGWCCY	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	453
PsiI	TTATAA	1 cut(s)	747
Psp5II	RGGWCCY	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	613
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	4 cut(s)	79, 99, 342, 360
PspPI	GGNCC	4 cut(s)	193, 198, 341, 415
PspPPI	RGGWCCY	1 cut(s)	341
PstNI	CAGNNNCTG	2 cut(s)	481, 968
PsuI	RGATCY	1 cut(s)	7
PvuI	CGATCG	1 cut(s)	188
PvuII	CAGCTG	2 cut(s)	327, 800
RsaI	GTAC	3 cut(s)	14, 564, 792
RsaNI	GTAC	3 cut(s)	13, 563, 791
RseI	CAYNNNNRTG	1 cut(s)	119
Rsr2I	CGGWCCG	2 cut(s)	193, 198
RsrII	CGGWCCG	2 cut(s)	193, 198
SaqAI	TTAA	3 cut(s)	365, 453, 572
Sau3AI	GATC	3 cut(s)	7, 185, 310
Sau96I	GGNCC	4 cut(s)	193, 198, 341, 415
SchI	GAGTC	4 cut(s)	23, 197, 254, 841
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	1 cut(s)	707
SfaNI	GCATC	6 cut(s)	175, 507, 607, 612, 752, 955
SfcI	CTRYAG	1 cut(s)	859
SfoI	GGCGCC	1 cut(s)	99
SinI	GGWCC	4 cut(s)	193, 198, 341, 415
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	849
SmoI	CTYRAG	1 cut(s)	849
Sse9I	AATT	3 cut(s)	173, 490, 531
SspDI	GGCGCC	1 cut(s)	97
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	1 cut(s)	690
StyD4I	CCNGG	1 cut(s)	613
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	515, 845
TasI	AATT	3 cut(s)	173, 490, 531
TatI	WGTACW	1 cut(s)	562
TfiI	GAWTC	4 cut(s)	236, 484, 775, 932
Tru1I	TTAA	3 cut(s)	365, 453, 572
Tru9I	TTAA	3 cut(s)	365, 453, 572
TscAI	CASTG	3 cut(s)	150, 340, 763
TseFI	GTSAC	2 cut(s)	317, 329
TseI	GCWGC	4 cut(s)	547, 625, 800, 875
Tsp45I	GTSAC	2 cut(s)	317, 329
TspDTI	ATGAA	4 cut(s)	244, 479, 540, 948
TspGWI	ACGGA	3 cut(s)	30, 288, 518
TspRI	CASTG	3 cut(s)	150, 340, 763
Van91I	CCANNNNNTGG	1 cut(s)	713
VpaK11BI	GGWCC	4 cut(s)	193, 198, 341, 415
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	1 cut(s)	490
XceI	RCATGY	1 cut(s)	124
XspI	CTAG	1 cut(s)	690
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.