pycom08g07960

Transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
6414813 .. 6417391
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g07960.5

Sequence Viewer

Length: 1059 bp
ATGGCGGATCTGTACGGATCAGCGCCGGACTCGGAAGAAATATCGAACATTATCAGCGAGCTCCTTCACGGTCGCGGCTCCTCCGCTTCCTCAGCCTATTCTAGCATGCCCTTTAAGCCCACTTACATGCACCTGCTGCATTCGTCAGTGCCGCTGCCACTCCAGGCGGCGACGCCGTCCCAGGTCTTGATTCCGGAGGCCAGGCATGAGGATCATCGGCGGTTTGCTCAATTGGTGGACCGGTCTGGCTCGGACCAGCGAGTAGTGGGAGGAAATTCGAACTCTGCTCGTATGTTGGAGTCGTCGTCCGGGTTCCACTTCTCCGATTCCAGTGGCTACTTCACGGCGGAGGTGAAAGAAGGTATGGAGTCTGATGGGAGGAGGATTTCGTCTGAGAATTATCTCGGCGACTTTAGCTGTGACAGTGAGGGTCTGGAGGAGGCTCCGGACGTGCAATTGAACTCAGCGCCTCCGCGGAGTTCATCGAAGAGGAGCAGAGCTGCCGACGTCCATAATATGTCGGAAAAGAGGAGGAGGAGTAGGATTAACGAAAAGATGAAAGCGTTGCTGAACCTGATTCCGAATTCTAACAAGGCTTCGATGCTGGATGAAGCAATCGAGTATTTGAAGCAGCTCCAGCTTCAGGTACAGATGTTAACGATGAGAAATGGATTGAGTTTGCATCCAATGTGCATACCAGGAGTCATGCAGCCTATGCAGTTGCCTCATATGGGATTGAGCTTTGAAGAAGGAAGTAATAAATTTCCAAAATCCAGCAAAGGAATAAGCCCTTTTTACGGGAGTGGAGAGAACTCAATGCAATCTGCTTTCAATTTATCCGCCGGATACATGATCTCAAATCCACCAATGGTCAGACCCTCAGTTGCAAATGTCCCGACTTCAGAACCCATATTTGGTTTTGAACCATCGGTTCAAGCTCACTACAGACTCTTCAGTGTCCCCTCATCCTCTAAGGAACTCTTCAGTGACGGTGAACCACAATCAAAAGTAGATACCATTAGGACAGGGAAAAACTCTTCATCGGACGTTGATGTATGA

Protein Analysis

353

Amino Acids

38.54

Weight (kDa)

5.95

Isoelectric Point (pI)

69.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012416)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 141
AatII GACGTC 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 141
AccII CGCG 2 cut(s) 75, 475
AccIII TCCGGA 2 cut(s) 193, 445
AclWI GGATC 3 cut(s) 15, 25, 219
AcsI RAATTY 3 cut(s) 274, 583, 761
AcuI CTGAAG 4 cut(s) 626, 885, 937, 967
AcyI GRCGYC 2 cut(s) 173, 507
AfaI GTAC 2 cut(s) 14, 648
AfiI CCNNNNNNNGG 4 cut(s) 643, 731, 797, 914
AgeI ACCGGT 1 cut(s) 240
AgsI TTSAA 6 cut(s) 460, 628, 746, 832, 923, 935
AjiI CACGTC 1 cut(s) 451
AjnI CCWGG 4 cut(s) 162, 180, 200, 697
AjuI GAANNNNNNNTTGG 2 cut(s) 897, 929
AluBI AGCT 7 cut(s) 61, 417, 500, 634, 640, 741, 938
AluI AGCT 7 cut(s) 61, 417, 500, 634, 640, 741, 938
Alw21I GWGCWC 1 cut(s) 63
AlwI GGATC 3 cut(s) 15, 25, 219
Aor13HI TCCGGA 2 cut(s) 193, 445
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 5 cut(s) 136, 154, 500, 631, 709
ApoI RAATTY 3 cut(s) 274, 583, 761
AsiGI ACCGGT 1 cut(s) 240
AspLEI GCGC 2 cut(s) 25, 469
AspS9I GGNCC 2 cut(s) 238, 253
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 2 cut(s) 364, 1004
AsuII TTCGAA 1 cut(s) 278
AvaII GGWCC 2 cut(s) 238, 253
BaeI ACNNNNGTAYC 2 cut(s) 638, 671
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 63
BbvCI CCTCAGC 1 cut(s) 91
BbvI GCAGC 5 cut(s) 123, 141, 487, 643, 721
BccI CCATC 2 cut(s) 368, 934
BceAI ACGGC 2 cut(s) 160, 360
BciT130I CCWGG 4 cut(s) 164, 182, 202, 699
BciVI GTATCC 1 cut(s) 839
BcnI CCSGG 1 cut(s) 310
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 943
BfoI RGCGCY 2 cut(s) 26, 470
BfuAI ACCTGC 1 cut(s) 141
BfuI GTATCC 1 cut(s) 839
BisI GCNGC 8 cut(s) 76, 137, 152, 155, 168, 501, 632, 710
BlsI GCNGC 8 cut(s) 77, 138, 153, 156, 169, 502, 633, 711
Bme1390I CCNGG 5 cut(s) 164, 182, 202, 310, 699
Bme18I GGWCC 2 cut(s) 238, 253
BmgBI CACGTC 1 cut(s) 451
BmgT120I GGNCC 2 cut(s) 238, 253
BmiI GGNNCC 3 cut(s) 79, 314, 444
BmrFI CCNGG 5 cut(s) 164, 182, 202, 310, 699
BmsI GCATC 2 cut(s) 591, 691
BpmI CTGGAG 3 cut(s) 146, 455, 620
Bpu10I CCTNAGC 1 cut(s) 91
Bpu14I TTCGAA 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 310
BsaHI GRCGYC 2 cut(s) 173, 507
BsaJI CCNNGG 2 cut(s) 180, 473
BsaWI WCCGGW 3 cut(s) 193, 240, 445
BsaXI ACNNNNNCTCC 4 cut(s) 290, 320, 523, 553
Bsc4I CCNNNNNNNGG 4 cut(s) 643, 731, 797, 914
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 330
BseAI TCCGGA 2 cut(s) 193, 445
BseBI CCWGG 4 cut(s) 164, 182, 202, 699
BseDI CCNNGG 2 cut(s) 180, 473
BseGI GGATG 3 cut(s) 613, 682, 965
BseLI CCNNNNNNNGG 4 cut(s) 643, 731, 797, 914
BseMII CTCAG 4 cut(s) 105, 384, 477, 894
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 7 cut(s) 70, 394, 452, 505, 544, 547, 550
BseXI GCAGC 5 cut(s) 123, 141, 487, 643, 721
Bsh1236I CGCG 2 cut(s) 75, 475
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 200
BshTI ACCGGT 1 cut(s) 240
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 6 cut(s) 26, 194, 241, 309, 446, 843
BslFI GGGAC 3 cut(s) 163, 878, 944
BslI CCNNNNNNNGG 4 cut(s) 643, 731, 797, 914
BsmFI GGGAC 3 cut(s) 163, 878, 944
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 63
Bsp13I TCCGGA 2 cut(s) 193, 445
Bsp143I GATC 4 cut(s) 7, 17, 211, 852
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 4 cut(s) 104, 385, 476, 893
BspEI TCCGGA 2 cut(s) 193, 445
BspFNI CGCG 2 cut(s) 75, 475
BspLI GGNNCC 3 cut(s) 79, 314, 444
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 3 cut(s) 15, 25, 219
BspT104I TTCGAA 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 240
BsrI ACTGG 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 180, 473
BssMI GATC 4 cut(s) 7, 17, 211, 852
BssNI GRCGYC 2 cut(s) 173, 507
Bst2UI CCWGG 4 cut(s) 164, 182, 202, 699
Bst4CI ACNGT 3 cut(s) 71, 425, 992
Bst6I CTCTTC 4 cut(s) 482, 956, 986, 1042
BstACI GRCGYC 2 cut(s) 173, 507
BstAPI GCANNNNNTGC 2 cut(s) 136, 715
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 59, 107
BstDEI CTNAG 5 cut(s) 91, 393, 463, 880, 972
BstDSI CCRYGG 1 cut(s) 473
BstF5I GGATG 3 cut(s) 613, 682, 965
BstFNI CGCG 2 cut(s) 75, 475
BstH2I RGCGCY 2 cut(s) 26, 470
BstHHI GCGC 2 cut(s) 25, 469
BstKTI GATC 4 cut(s) 10, 20, 214, 855
BstMBI GATC 4 cut(s) 7, 17, 211, 852
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 6 cut(s) 92, 115, 136, 414, 637, 715
BstNI CCWGG 4 cut(s) 164, 182, 202, 699
BstNSI RCATGY 2 cut(s) 109, 130
BstSCI CCNGG 5 cut(s) 162, 180, 200, 308, 697
BstSFI CTRYAG 1 cut(s) 943
BstUI CGCG 2 cut(s) 75, 475
BstV1I GCAGC 5 cut(s) 123, 141, 487, 643, 721
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuI GTATCC 1 cut(s) 839
BsuRI GGCC 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 473
BtrI CACGTC 1 cut(s) 451
BtsCI GGATG 3 cut(s) 613, 682, 965
BtsIMutI CAGTG 5 cut(s) 153, 337, 430, 961, 991
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 59, 107
CfoI GCGC 2 cut(s) 25, 469
Cfr10I RCCGGY 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 238, 253
Cfr42I CCGCGG 1 cut(s) 476
CseI GACGC 1 cut(s) 181
Csp6I GTAC 2 cut(s) 13, 647
CspAI ACCGGT 1 cut(s) 240
CviAII CATG 5 cut(s) 106, 127, 206, 706, 850
CviQI GTAC 2 cut(s) 13, 647
DdeI CTNAG 5 cut(s) 91, 393, 463, 880, 972
DpnI GATC 4 cut(s) 9, 19, 213, 854
DpnII GATC 4 cut(s) 7, 17, 211, 852
Eam1104I CTCTTC 4 cut(s) 482, 956, 986, 1042
EarI CTCTTC 4 cut(s) 482, 956, 986, 1042
EciI GGCGGA 3 cut(s) 20, 362, 829
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 238, 253
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 4 cut(s) 626, 885, 937, 967
EcoICRI GAGCTC 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 583
EcoRII CCWGG 4 cut(s) 162, 180, 200, 697
EcoT38I GRGCYC 1 cut(s) 63
FaeI CATG 5 cut(s) 109, 130, 209, 709, 853
FalI AAGNNNNNCTT 2 cut(s) 965, 997
FaqI GGGAC 3 cut(s) 163, 878, 944
FatI CATG 5 cut(s) 105, 126, 205, 705, 849
FauNDI CATATG 1 cut(s) 729
Fnu4HI GCNGC 8 cut(s) 76, 137, 152, 155, 168, 501, 632, 710
FokI GGATG 3 cut(s) 620, 669, 952
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 8 cut(s) 76, 137, 152, 155, 168, 501, 632, 710
FspBI CTAG 1 cut(s) 102
GlaI GCGC 2 cut(s) 24, 468
GluI GCNGC 8 cut(s) 76, 137, 152, 155, 168, 501, 632, 710
GsuI CTGGAG 3 cut(s) 146, 455, 620
HaeII RGCGCY 2 cut(s) 26, 470
HaeIII GGCC 1 cut(s) 200
HapII CCGG 6 cut(s) 26, 194, 241, 309, 446, 843
HgaI GACGC 1 cut(s) 181
HhaI GCGC 2 cut(s) 25, 469
Hin1I GRCGYC 2 cut(s) 173, 507
Hin1II CATG 5 cut(s) 109, 130, 209, 709, 853
Hin6I GCGC 2 cut(s) 23, 467
HinP1I GCGC 2 cut(s) 23, 467
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HinfI GANTC 8 cut(s) 29, 190, 299, 326, 368, 577, 702, 948
HpaI GTTAAC 1 cut(s) 657
HpaII CCGG 6 cut(s) 26, 194, 241, 309, 446, 843
HphI GGTGA 2 cut(s) 364, 1004
Hpy166II GTNNAC 3 cut(s) 238, 657, 995
Hpy188III TCNNGA 5 cut(s) 187, 194, 434, 446, 895
Hpy8I GTNNAC 3 cut(s) 238, 657, 995
Hpy99I CGWCG 3 cut(s) 175, 307, 509
HpyAV CCTTC 3 cut(s) 74, 353, 743
HpyCH4III ACNGT 3 cut(s) 71, 425, 992
HpyCH4IV ACGT 3 cut(s) 450, 507, 1047
HpyCH4V TGCA 9 cut(s) 130, 139, 454, 682, 693, 709, 718, 820, 887
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 115, 136, 414, 637, 715
HpyF3I CTNAG 5 cut(s) 91, 393, 463, 880, 972
HpySE526I ACGT 3 cut(s) 450, 507, 1047
Hsp92I GRCGYC 2 cut(s) 173, 507
Hsp92II CATG 5 cut(s) 109, 130, 209, 709, 853
HspAI GCGC 2 cut(s) 23, 467
Kpn2I TCCGGA 2 cut(s) 193, 445
KspAI GTTAAC 1 cut(s) 657
KspI CCGCGG 1 cut(s) 476
Kzo9I GATC 4 cut(s) 7, 17, 211, 852
LmnI GCTCC 5 cut(s) 66, 83, 448, 492, 639
Lsp1109I GCAGC 5 cut(s) 123, 141, 487, 643, 721
LweI GCATC 2 cut(s) 591, 691
MaeI CTAG 1 cut(s) 102
MaeII ACGT 3 cut(s) 450, 507, 1047
MaeIII GTNAC 2 cut(s) 419, 986
MalI GATC 4 cut(s) 9, 19, 213, 854
MboI GATC 4 cut(s) 7, 17, 211, 852
MboII GAAGA 6 cut(s) 47, 499, 758, 943, 973, 1029
MfeI CAATTG 2 cut(s) 230, 455
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 7 cut(s) 230, 274, 397, 455, 583, 761, 832
MlyI GAGTC 5 cut(s) 23, 308, 377, 711, 942
MmeI TCCRAC 2 cut(s) 276, 501
MroI TCCGGA 2 cut(s) 193, 445
MseI TTAA 3 cut(s) 114, 546, 656
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 154, 475
MspI CCGG 6 cut(s) 26, 194, 241, 309, 446, 843
MspR9I CCNGG 5 cut(s) 164, 182, 202, 310, 699
MunI CAATTG 2 cut(s) 230, 455
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 4 cut(s) 164, 182, 202, 699
MvnI CGCG 2 cut(s) 75, 475
MwoI GCNNNNNNNGC 6 cut(s) 92, 115, 136, 414, 637, 715
NciI CCSGG 1 cut(s) 310
NdeI CATATG 1 cut(s) 729
NdeII GATC 4 cut(s) 7, 17, 211, 852
NlaIII CATG 5 cut(s) 109, 130, 209, 709, 853
NlaIV GGNNCC 3 cut(s) 79, 314, 444
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 419, 986
NspI RCATGY 2 cut(s) 109, 130
NspV TTCGAA 1 cut(s) 278
PaeI GCATGC 1 cut(s) 109
PaqCI CACCTGC 1 cut(s) 141
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 3 cut(s) 190, 326, 577
PflFI GACNNNGTC 1 cut(s) 175
PinAI ACCGGT 1 cut(s) 240
PkrI GCNGC 8 cut(s) 77, 138, 153, 156, 169, 502, 633, 711
PleI GAGTC 5 cut(s) 23, 307, 376, 710, 942
PpsI GAGTC 5 cut(s) 23, 307, 376, 710, 942
Psp124BI GAGCTC 1 cut(s) 63
Psp6I CCWGG 4 cut(s) 162, 180, 200, 697
PspGI CCWGG 4 cut(s) 162, 180, 200, 697
PspN4I GGNNCC 3 cut(s) 79, 314, 444
PspPI GGNCC 2 cut(s) 238, 253
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 175
RsaI GTAC 2 cut(s) 14, 648
RsaNI GTAC 2 cut(s) 13, 647
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 63
SacII CCGCGG 1 cut(s) 476
SaqAI TTAA 3 cut(s) 114, 546, 656
SatI GCNGC 8 cut(s) 76, 137, 152, 155, 168, 501, 632, 710
Sau3AI GATC 4 cut(s) 7, 17, 211, 852
Sau96I GGNCC 2 cut(s) 238, 253
SchI GAGTC 5 cut(s) 23, 308, 377, 711, 942
ScrFI CCNGG 5 cut(s) 164, 182, 202, 310, 699
SduI GDGCHC 1 cut(s) 63
SfaNI GCATC 2 cut(s) 591, 691
SfcI CTRYAG 1 cut(s) 943
Sfr303I CCGCGG 1 cut(s) 476
SfuI TTCGAA 1 cut(s) 278
SgrBI CCGCGG 1 cut(s) 476
SinI GGWCC 2 cut(s) 238, 253
SmiMI CAYNNNNRTG 1 cut(s) 125
SphI GCATGC 1 cut(s) 109
Sse9I AATT 7 cut(s) 230, 274, 397, 455, 583, 761, 832
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 5 cut(s) 162, 180, 200, 308, 697
TaaI ACNGT 3 cut(s) 71, 425, 992
TaiI ACGT 3 cut(s) 453, 510, 1050
TaqI TCGA 5 cut(s) 44, 278, 485, 599, 618
TasI AATT 7 cut(s) 230, 274, 397, 455, 583, 761, 832
TauI GCSGC 3 cut(s) 78, 154, 170
TfiI GAWTC 3 cut(s) 190, 326, 577
Tru1I TTAA 3 cut(s) 114, 546, 656
Tru9I TTAA 3 cut(s) 114, 546, 656
TscAI CASTG 5 cut(s) 153, 337, 430, 961, 991
TseFI GTSAC 2 cut(s) 419, 986
TseI GCWGC 5 cut(s) 136, 154, 500, 631, 709
Tsp45I GTSAC 2 cut(s) 419, 986
TspDTI ATGAA 4 cut(s) 471, 572, 624, 1029
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 5 cut(s) 153, 337, 430, 961, 991
Tth111I GACNNNGTC 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 238, 253
XapI RAATTY 3 cut(s) 274, 583, 761
XceI RCATGY 2 cut(s) 109, 130
XspI CTAG 1 cut(s) 102
ZraI GACGTC 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.