Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G67110 AT5G67110 AT5G67110 |
| fragaria_vesca | FvH4_2g34100 |
| malus_domestica | MD15G1079800.v1.1 |
| prunus_persica | Prupe.1G432800_v2.0.a1 |
| pyrus_communis | pycom08g07960 pycom15g07430 |
| rosa_chinensis | RchiOBHm_Chr6g0308251 |
| rosa_laevigata | RLG00000010654 |
| rosa_multiflora | Rmu_sc0012549.1_g000001 Rmu_ssc0000355.1_g000007 |
| rosa_roxburghii | Rroxscaffold_7G00160320 |
| rosa_rugosa | Rorug06G0365400 |
| rosa_samantha | Rh6AG474400 Rh6BG485100 Rh6CG490100 Rh6DG476500 |
| rosa_wichuraiana | Rw6G041380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 141 |
| AatII | GACGTC | 1 cut(s) | 510 |
| Acc36I | ACCTGC | 1 cut(s) | 141 |
| AccII | CGCG | 2 cut(s) | 75, 475 |
| AccIII | TCCGGA | 2 cut(s) | 193, 445 |
| AclWI | GGATC | 3 cut(s) | 15, 25, 219 |
| AcsI | RAATTY | 3 cut(s) | 274, 583, 761 |
| AcuI | CTGAAG | 4 cut(s) | 626, 885, 937, 967 |
| AcyI | GRCGYC | 2 cut(s) | 173, 507 |
| AfaI | GTAC | 2 cut(s) | 14, 648 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 643, 731, 797, 914 |
| AgeI | ACCGGT | 1 cut(s) | 240 |
| AgsI | TTSAA | 6 cut(s) | 460, 628, 746, 832, 923, 935 |
| AjiI | CACGTC | 1 cut(s) | 451 |
| AjnI | CCWGG | 4 cut(s) | 162, 180, 200, 697 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 897, 929 |
| AluBI | AGCT | 7 cut(s) | 61, 417, 500, 634, 640, 741, 938 |
| AluI | AGCT | 7 cut(s) | 61, 417, 500, 634, 640, 741, 938 |
| Alw21I | GWGCWC | 1 cut(s) | 63 |
| AlwI | GGATC | 3 cut(s) | 15, 25, 219 |
| Aor13HI | TCCGGA | 2 cut(s) | 193, 445 |
| AoxI | GGCC | 1 cut(s) | 198 |
| ApeKI | GCWGC | 5 cut(s) | 136, 154, 500, 631, 709 |
| ApoI | RAATTY | 3 cut(s) | 274, 583, 761 |
| AsiGI | ACCGGT | 1 cut(s) | 240 |
| AspLEI | GCGC | 2 cut(s) | 25, 469 |
| AspS9I | GGNCC | 2 cut(s) | 238, 253 |
| AsuC2I | CCSGG | 1 cut(s) | 310 |
| AsuHPI | GGTGA | 2 cut(s) | 364, 1004 |
| AsuII | TTCGAA | 1 cut(s) | 278 |
| AvaII | GGWCC | 2 cut(s) | 238, 253 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 638, 671 |
| BanII | GRGCYC | 1 cut(s) | 63 |
| Bbv12I | GWGCWC | 1 cut(s) | 63 |
| BbvCI | CCTCAGC | 1 cut(s) | 91 |
| BbvI | GCAGC | 5 cut(s) | 123, 141, 487, 643, 721 |
| BccI | CCATC | 2 cut(s) | 368, 934 |
| BceAI | ACGGC | 2 cut(s) | 160, 360 |
| BciT130I | CCWGG | 4 cut(s) | 164, 182, 202, 699 |
| BciVI | GTATCC | 1 cut(s) | 839 |
| BcnI | CCSGG | 1 cut(s) | 310 |
| BfaI | CTAG | 1 cut(s) | 102 |
| BfmI | CTRYAG | 1 cut(s) | 943 |
| BfoI | RGCGCY | 2 cut(s) | 26, 470 |
| BfuAI | ACCTGC | 1 cut(s) | 141 |
| BfuI | GTATCC | 1 cut(s) | 839 |
| BisI | GCNGC | 8 cut(s) | 76, 137, 152, 155, 168, 501, 632, 710 |
| BlsI | GCNGC | 8 cut(s) | 77, 138, 153, 156, 169, 502, 633, 711 |
| Bme1390I | CCNGG | 5 cut(s) | 164, 182, 202, 310, 699 |
| Bme18I | GGWCC | 2 cut(s) | 238, 253 |
| BmgBI | CACGTC | 1 cut(s) | 451 |
| BmgT120I | GGNCC | 2 cut(s) | 238, 253 |
| BmiI | GGNNCC | 3 cut(s) | 79, 314, 444 |
| BmrFI | CCNGG | 5 cut(s) | 164, 182, 202, 310, 699 |
| BmsI | GCATC | 2 cut(s) | 591, 691 |
| BpmI | CTGGAG | 3 cut(s) | 146, 455, 620 |
| Bpu10I | CCTNAGC | 1 cut(s) | 91 |
| Bpu14I | TTCGAA | 1 cut(s) | 278 |
| BpuMI | CCSGG | 1 cut(s) | 310 |
| BsaHI | GRCGYC | 2 cut(s) | 173, 507 |
| BsaJI | CCNNGG | 2 cut(s) | 180, 473 |
| BsaWI | WCCGGW | 3 cut(s) | 193, 240, 445 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 290, 320, 523, 553 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 643, 731, 797, 914 |
| Bse118I | RCCGGY | 1 cut(s) | 240 |
| Bse1I | ACTGG | 1 cut(s) | 330 |
| BseAI | TCCGGA | 2 cut(s) | 193, 445 |
| BseBI | CCWGG | 4 cut(s) | 164, 182, 202, 699 |
| BseDI | CCNNGG | 2 cut(s) | 180, 473 |
| BseGI | GGATG | 3 cut(s) | 613, 682, 965 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 643, 731, 797, 914 |
| BseMII | CTCAG | 4 cut(s) | 105, 384, 477, 894 |
| BseNI | ACTGG | 1 cut(s) | 330 |
| BseRI | GAGGAG | 7 cut(s) | 70, 394, 452, 505, 544, 547, 550 |
| BseXI | GCAGC | 5 cut(s) | 123, 141, 487, 643, 721 |
| Bsh1236I | CGCG | 2 cut(s) | 75, 475 |
| Bsh1285I | CGRYCG | 1 cut(s) | 73 |
| BshFI | GGCC | 1 cut(s) | 200 |
| BshTI | ACCGGT | 1 cut(s) | 240 |
| BsiEI | CGRYCG | 1 cut(s) | 73 |
| BsiHKAI | GWGCWC | 1 cut(s) | 63 |
| BsiSI | CCGG | 6 cut(s) | 26, 194, 241, 309, 446, 843 |
| BslFI | GGGAC | 3 cut(s) | 163, 878, 944 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 643, 731, 797, 914 |
| BsmFI | GGGAC | 3 cut(s) | 163, 878, 944 |
| BsmI | GAATGC | 1 cut(s) | 139 |
| BsnI | GGCC | 1 cut(s) | 200 |
| Bsp119I | TTCGAA | 1 cut(s) | 278 |
| Bsp1286I | GDGCHC | 1 cut(s) | 63 |
| Bsp13I | TCCGGA | 2 cut(s) | 193, 445 |
| Bsp143I | GATC | 4 cut(s) | 7, 17, 211, 852 |
| BspANI | GGCC | 1 cut(s) | 200 |
| BspCNI | CTCAG | 4 cut(s) | 104, 385, 476, 893 |
| BspEI | TCCGGA | 2 cut(s) | 193, 445 |
| BspFNI | CGCG | 2 cut(s) | 75, 475 |
| BspLI | GGNNCC | 3 cut(s) | 79, 314, 444 |
| BspMI | ACCTGC | 1 cut(s) | 141 |
| BspPI | GGATC | 3 cut(s) | 15, 25, 219 |
| BspT104I | TTCGAA | 1 cut(s) | 278 |
| BsrFI | RCCGGY | 1 cut(s) | 240 |
| BsrI | ACTGG | 1 cut(s) | 330 |
| BssAI | RCCGGY | 1 cut(s) | 240 |
| BssECI | CCNNGG | 2 cut(s) | 180, 473 |
| BssMI | GATC | 4 cut(s) | 7, 17, 211, 852 |
| BssNI | GRCGYC | 2 cut(s) | 173, 507 |
| Bst2UI | CCWGG | 4 cut(s) | 164, 182, 202, 699 |
| Bst4CI | ACNGT | 3 cut(s) | 71, 425, 992 |
| Bst6I | CTCTTC | 4 cut(s) | 482, 956, 986, 1042 |
| BstACI | GRCGYC | 2 cut(s) | 173, 507 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 136, 715 |
| BstBI | TTCGAA | 1 cut(s) | 278 |
| BstC8I | GCNNGC | 2 cut(s) | 59, 107 |
| BstDEI | CTNAG | 5 cut(s) | 91, 393, 463, 880, 972 |
| BstDSI | CCRYGG | 1 cut(s) | 473 |
| BstF5I | GGATG | 3 cut(s) | 613, 682, 965 |
| BstFNI | CGCG | 2 cut(s) | 75, 475 |
| BstH2I | RGCGCY | 2 cut(s) | 26, 470 |
| BstHHI | GCGC | 2 cut(s) | 25, 469 |
| BstKTI | GATC | 4 cut(s) | 10, 20, 214, 855 |
| BstMBI | GATC | 4 cut(s) | 7, 17, 211, 852 |
| BstMCI | CGRYCG | 1 cut(s) | 73 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 92, 115, 136, 414, 637, 715 |
| BstNI | CCWGG | 4 cut(s) | 164, 182, 202, 699 |
| BstNSI | RCATGY | 2 cut(s) | 109, 130 |
| BstSCI | CCNGG | 5 cut(s) | 162, 180, 200, 308, 697 |
| BstSFI | CTRYAG | 1 cut(s) | 943 |
| BstUI | CGCG | 2 cut(s) | 75, 475 |
| BstV1I | GCAGC | 5 cut(s) | 123, 141, 487, 643, 721 |
| BstX2I | RGATCY | 1 cut(s) | 7 |
| BstYI | RGATCY | 1 cut(s) | 7 |
| BsuI | GTATCC | 1 cut(s) | 839 |
| BsuRI | GGCC | 1 cut(s) | 200 |
| BtgI | CCRYGG | 1 cut(s) | 473 |
| BtrI | CACGTC | 1 cut(s) | 451 |
| BtsCI | GGATG | 3 cut(s) | 613, 682, 965 |
| BtsIMutI | CAGTG | 5 cut(s) | 153, 337, 430, 961, 991 |
| BveI | ACCTGC | 1 cut(s) | 141 |
| Cac8I | GCNNGC | 2 cut(s) | 59, 107 |
| CfoI | GCGC | 2 cut(s) | 25, 469 |
| Cfr10I | RCCGGY | 1 cut(s) | 240 |
| Cfr13I | GGNCC | 2 cut(s) | 238, 253 |
| Cfr42I | CCGCGG | 1 cut(s) | 476 |
| CseI | GACGC | 1 cut(s) | 181 |
| Csp6I | GTAC | 2 cut(s) | 13, 647 |
| CspAI | ACCGGT | 1 cut(s) | 240 |
| CviAII | CATG | 5 cut(s) | 106, 127, 206, 706, 850 |
| CviQI | GTAC | 2 cut(s) | 13, 647 |
| DdeI | CTNAG | 5 cut(s) | 91, 393, 463, 880, 972 |
| DpnI | GATC | 4 cut(s) | 9, 19, 213, 854 |
| DpnII | GATC | 4 cut(s) | 7, 17, 211, 852 |
| Eam1104I | CTCTTC | 4 cut(s) | 482, 956, 986, 1042 |
| EarI | CTCTTC | 4 cut(s) | 482, 956, 986, 1042 |
| EciI | GGCGGA | 3 cut(s) | 20, 362, 829 |
| Ecl136II | GAGCTC | 1 cut(s) | 61 |
| Eco24I | GRGCYC | 1 cut(s) | 63 |
| Eco47I | GGWCC | 2 cut(s) | 238, 253 |
| Eco53kI | GAGCTC | 1 cut(s) | 61 |
| Eco57I | CTGAAG | 4 cut(s) | 626, 885, 937, 967 |
| EcoICRI | GAGCTC | 1 cut(s) | 61 |
| EcoRI | GAATTC | 1 cut(s) | 583 |
| EcoRII | CCWGG | 4 cut(s) | 162, 180, 200, 697 |
| EcoT38I | GRGCYC | 1 cut(s) | 63 |
| FaeI | CATG | 5 cut(s) | 109, 130, 209, 709, 853 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 965, 997 |
| FaqI | GGGAC | 3 cut(s) | 163, 878, 944 |
| FatI | CATG | 5 cut(s) | 105, 126, 205, 705, 849 |
| FauNDI | CATATG | 1 cut(s) | 729 |
| Fnu4HI | GCNGC | 8 cut(s) | 76, 137, 152, 155, 168, 501, 632, 710 |
| FokI | GGATG | 3 cut(s) | 620, 669, 952 |
| FriOI | GRGCYC | 1 cut(s) | 63 |
| Fsp4HI | GCNGC | 8 cut(s) | 76, 137, 152, 155, 168, 501, 632, 710 |
| FspBI | CTAG | 1 cut(s) | 102 |
| GlaI | GCGC | 2 cut(s) | 24, 468 |
| GluI | GCNGC | 8 cut(s) | 76, 137, 152, 155, 168, 501, 632, 710 |
| GsuI | CTGGAG | 3 cut(s) | 146, 455, 620 |
| HaeII | RGCGCY | 2 cut(s) | 26, 470 |
| HaeIII | GGCC | 1 cut(s) | 200 |
| HapII | CCGG | 6 cut(s) | 26, 194, 241, 309, 446, 843 |
| HgaI | GACGC | 1 cut(s) | 181 |
| HhaI | GCGC | 2 cut(s) | 25, 469 |
| Hin1I | GRCGYC | 2 cut(s) | 173, 507 |
| Hin1II | CATG | 5 cut(s) | 109, 130, 209, 709, 853 |
| Hin6I | GCGC | 2 cut(s) | 23, 467 |
| HinP1I | GCGC | 2 cut(s) | 23, 467 |
| HincII | GTYRAC | 1 cut(s) | 657 |
| HindII | GTYRAC | 1 cut(s) | 657 |
| HinfI | GANTC | 8 cut(s) | 29, 190, 299, 326, 368, 577, 702, 948 |
| HpaI | GTTAAC | 1 cut(s) | 657 |
| HpaII | CCGG | 6 cut(s) | 26, 194, 241, 309, 446, 843 |
| HphI | GGTGA | 2 cut(s) | 364, 1004 |
| Hpy166II | GTNNAC | 3 cut(s) | 238, 657, 995 |
| Hpy188III | TCNNGA | 5 cut(s) | 187, 194, 434, 446, 895 |
| Hpy8I | GTNNAC | 3 cut(s) | 238, 657, 995 |
| Hpy99I | CGWCG | 3 cut(s) | 175, 307, 509 |
| HpyAV | CCTTC | 3 cut(s) | 74, 353, 743 |
| HpyCH4III | ACNGT | 3 cut(s) | 71, 425, 992 |
| HpyCH4IV | ACGT | 3 cut(s) | 450, 507, 1047 |
| HpyCH4V | TGCA | 9 cut(s) | 130, 139, 454, 682, 693, 709, 718, 820, 887 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 92, 115, 136, 414, 637, 715 |
| HpyF3I | CTNAG | 5 cut(s) | 91, 393, 463, 880, 972 |
| HpySE526I | ACGT | 3 cut(s) | 450, 507, 1047 |
| Hsp92I | GRCGYC | 2 cut(s) | 173, 507 |
| Hsp92II | CATG | 5 cut(s) | 109, 130, 209, 709, 853 |
| HspAI | GCGC | 2 cut(s) | 23, 467 |
| Kpn2I | TCCGGA | 2 cut(s) | 193, 445 |
| KspAI | GTTAAC | 1 cut(s) | 657 |
| KspI | CCGCGG | 1 cut(s) | 476 |
| Kzo9I | GATC | 4 cut(s) | 7, 17, 211, 852 |
| LmnI | GCTCC | 5 cut(s) | 66, 83, 448, 492, 639 |
| Lsp1109I | GCAGC | 5 cut(s) | 123, 141, 487, 643, 721 |
| LweI | GCATC | 2 cut(s) | 591, 691 |
| MaeI | CTAG | 1 cut(s) | 102 |
| MaeII | ACGT | 3 cut(s) | 450, 507, 1047 |
| MaeIII | GTNAC | 2 cut(s) | 419, 986 |
| MalI | GATC | 4 cut(s) | 9, 19, 213, 854 |
| MboI | GATC | 4 cut(s) | 7, 17, 211, 852 |
| MboII | GAAGA | 6 cut(s) | 47, 499, 758, 943, 973, 1029 |
| MfeI | CAATTG | 2 cut(s) | 230, 455 |
| MflI | RGATCY | 1 cut(s) | 7 |
| MhlI | GDGCHC | 1 cut(s) | 63 |
| MluCI | AATT | 7 cut(s) | 230, 274, 397, 455, 583, 761, 832 |
| MlyI | GAGTC | 5 cut(s) | 23, 308, 377, 711, 942 |
| MmeI | TCCRAC | 2 cut(s) | 276, 501 |
| MroI | TCCGGA | 2 cut(s) | 193, 445 |
| MseI | TTAA | 3 cut(s) | 114, 546, 656 |
| MslI | CAYNNNNRTG | 1 cut(s) | 125 |
| MspA1I | CMGCKG | 2 cut(s) | 154, 475 |
| MspI | CCGG | 6 cut(s) | 26, 194, 241, 309, 446, 843 |
| MspR9I | CCNGG | 5 cut(s) | 164, 182, 202, 310, 699 |
| MunI | CAATTG | 2 cut(s) | 230, 455 |
| Mva1269I | GAATGC | 1 cut(s) | 139 |
| MvaI | CCWGG | 4 cut(s) | 164, 182, 202, 699 |
| MvnI | CGCG | 2 cut(s) | 75, 475 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 92, 115, 136, 414, 637, 715 |
| NciI | CCSGG | 1 cut(s) | 310 |
| NdeI | CATATG | 1 cut(s) | 729 |
| NdeII | GATC | 4 cut(s) | 7, 17, 211, 852 |
| NlaIII | CATG | 5 cut(s) | 109, 130, 209, 709, 853 |
| NlaIV | GGNNCC | 3 cut(s) | 79, 314, 444 |
| NmeAIII | GCCGAG | 1 cut(s) | 384 |
| NmuCI | GTSAC | 2 cut(s) | 419, 986 |
| NspI | RCATGY | 2 cut(s) | 109, 130 |
| NspV | TTCGAA | 1 cut(s) | 278 |
| PaeI | GCATGC | 1 cut(s) | 109 |
| PaqCI | CACCTGC | 1 cut(s) | 141 |
| PctI | GAATGC | 1 cut(s) | 139 |
| PfeI | GAWTC | 3 cut(s) | 190, 326, 577 |
| PflFI | GACNNNGTC | 1 cut(s) | 175 |
| PinAI | ACCGGT | 1 cut(s) | 240 |
| PkrI | GCNGC | 8 cut(s) | 77, 138, 153, 156, 169, 502, 633, 711 |
| PleI | GAGTC | 5 cut(s) | 23, 307, 376, 710, 942 |
| PpsI | GAGTC | 5 cut(s) | 23, 307, 376, 710, 942 |
| Psp124BI | GAGCTC | 1 cut(s) | 63 |
| Psp6I | CCWGG | 4 cut(s) | 162, 180, 200, 697 |
| PspGI | CCWGG | 4 cut(s) | 162, 180, 200, 697 |
| PspN4I | GGNNCC | 3 cut(s) | 79, 314, 444 |
| PspPI | GGNCC | 2 cut(s) | 238, 253 |
| PsuI | RGATCY | 1 cut(s) | 7 |
| PsyI | GACNNNGTC | 1 cut(s) | 175 |
| RsaI | GTAC | 2 cut(s) | 14, 648 |
| RsaNI | GTAC | 2 cut(s) | 13, 647 |
| RseI | CAYNNNNRTG | 1 cut(s) | 125 |
| SacI | GAGCTC | 1 cut(s) | 63 |
| SacII | CCGCGG | 1 cut(s) | 476 |
| SaqAI | TTAA | 3 cut(s) | 114, 546, 656 |
| SatI | GCNGC | 8 cut(s) | 76, 137, 152, 155, 168, 501, 632, 710 |
| Sau3AI | GATC | 4 cut(s) | 7, 17, 211, 852 |
| Sau96I | GGNCC | 2 cut(s) | 238, 253 |
| SchI | GAGTC | 5 cut(s) | 23, 308, 377, 711, 942 |
| ScrFI | CCNGG | 5 cut(s) | 164, 182, 202, 310, 699 |
| SduI | GDGCHC | 1 cut(s) | 63 |
| SfaNI | GCATC | 2 cut(s) | 591, 691 |
| SfcI | CTRYAG | 1 cut(s) | 943 |
| Sfr303I | CCGCGG | 1 cut(s) | 476 |
| SfuI | TTCGAA | 1 cut(s) | 278 |
| SgrBI | CCGCGG | 1 cut(s) | 476 |
| SinI | GGWCC | 2 cut(s) | 238, 253 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 125 |
| SphI | GCATGC | 1 cut(s) | 109 |
| Sse9I | AATT | 7 cut(s) | 230, 274, 397, 455, 583, 761, 832 |
| SspMI | CTAG | 1 cut(s) | 102 |
| SstI | GAGCTC | 1 cut(s) | 63 |
| StyD4I | CCNGG | 5 cut(s) | 162, 180, 200, 308, 697 |
| TaaI | ACNGT | 3 cut(s) | 71, 425, 992 |
| TaiI | ACGT | 3 cut(s) | 453, 510, 1050 |
| TaqI | TCGA | 5 cut(s) | 44, 278, 485, 599, 618 |
| TasI | AATT | 7 cut(s) | 230, 274, 397, 455, 583, 761, 832 |
| TauI | GCSGC | 3 cut(s) | 78, 154, 170 |
| TfiI | GAWTC | 3 cut(s) | 190, 326, 577 |
| Tru1I | TTAA | 3 cut(s) | 114, 546, 656 |
| Tru9I | TTAA | 3 cut(s) | 114, 546, 656 |
| TscAI | CASTG | 5 cut(s) | 153, 337, 430, 961, 991 |
| TseFI | GTSAC | 2 cut(s) | 419, 986 |
| TseI | GCWGC | 5 cut(s) | 136, 154, 500, 631, 709 |
| Tsp45I | GTSAC | 2 cut(s) | 419, 986 |
| TspDTI | ATGAA | 4 cut(s) | 471, 572, 624, 1029 |
| TspGWI | ACGGA | 1 cut(s) | 30 |
| TspRI | CASTG | 5 cut(s) | 153, 337, 430, 961, 991 |
| Tth111I | GACNNNGTC | 1 cut(s) | 175 |
| VpaK11BI | GGWCC | 2 cut(s) | 238, 253 |
| XapI | RAATTY | 3 cut(s) | 274, 583, 761 |
| XceI | RCATGY | 2 cut(s) | 109, 130 |
| XspI | CTAG | 1 cut(s) | 102 |
| ZraI | GACGTC | 1 cut(s) | 508 |