Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006234

Physical Location & Seq

Genomic Coordinates Reverse (-)

51290249 .. 51294175

Gene Structure 3927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0365400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGTCTTTCCAAGGAACAGTTGCTTGCCCGCTTAAAGGAGCTTCACATTGATTTTTCCCAGTATGATCATCCTGTTGTTTTGACAGTTGAGGCTCAGGCAAAATATGTTGGACATCTGGGAGGTGGACTCAGTAAAAATTTGTTCTTGAAGGATAAGAAGAGTAGGTTCTATATTGTTTCCGCTTTGGCAGATACTAAAGTAGATCTGAAAGTTCTATCTGTGAGGCTTGGTTTGGGAAAAGGTGGCTTGAGAATGGCTCCTGAAGAAGCACTGGGAGAAATACTTCAGGTCCCATTGGGTTGTGTTACTCCTTTATCACTGGTGAACGAATCTGCATGCAATGTCTCTCTGCTGTTGGATCAAAAATTTAAAAGTCAGGAGTTTTGCTTCTTCCACCCATTATCGAATGACATGTCAATCTCACTAACCACCAATGGTCTCGACAAGTTTCTTAAGTCAATTAAGAGAGACCCCTCATATGTTGACTTGGAGGCTAACCCATCAGTTGGGAAGGACCAACCTCCTGATCTTGCATCTCTTGTTCCGTCTAGTTCCGTAGTATTGCCAGATCCCCCGGAAACAGCAGCTTCCTCGAAAGGTCGCATAGAAAATACAGTTTCTGTGGGTAACAAGTCCACAAAAATGAGCACTTCTAAGCCATCCATTAATGCTAAAAAAACCCAGGATAAACCAGCCAACATAACAGATGTTGGAAAAATGGTTGATGACTTACTGGATTCAACATCTTCGCTAGTGCTGAAAGAGATTACGGAGGAGAATATTAAGGAACATGGAGAAGAGCTTGGAGAATTGTTATCAAAGAAAATTAAAAATCAATTAGCTGCAGAATTGCACAACACGATTATGATATTCAAAAACACTGCATACACAGAAGGATTCCACGCTGGGATGCACTGTCATCCAAAGCGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

312

Amino Acids

34.01

Weight (kDa)

7.12

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_edit	PF04073	24 - 151	1.8e-26	Aminoacyl-tRNA editing domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49770
fragaria_vesca	FvH4_2g05810
malus_domestica	MD05G1083300.v1.1 MD15G1079900.v1.1
prunus_persica	Prupe.1G432900_v2.0.a1 Prupe.8G127700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257881 RchiOBHm_Chr6g0308241
rosa_laevigata	RLG00000010655 RLG00000014735
rosa_multiflora	Rmu_co8385913.1_g000001 Rmu_sc0000077.1_g000033
rosa_roxburghii	Rroxscaffold_7G00209030
rosa_rugosa	Rorug05G0567100 Rorug06G0365300 Rorug06G0365300 Rorug06G0365400
rosa_samantha	Rh6AG084200 Rh6AG474300 Rh6BG078800 Rh6BG485000 Rh6CG073500 Rh6CG490000 Rh6DG070400 Rh6DG476400
rosa_wichuraiana	Rw6G007590 Rw6G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	509
AciI	CCGC	2 cut(s)	31, 183
AclWI	GGATC	2 cut(s)	369, 566
AcsI	RAATTY	2 cut(s)	139, 368
AcuI	CTGAAG	2 cut(s)	272, 285
AfiI	CCNNNNNNNGG	2 cut(s)	37, 509
AflII	CTTAAG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	3 cut(s)	151, 744, 877
AjnI	CCWGG	1 cut(s)	684
AluBI	AGCT	4 cut(s)	43, 590, 805, 845
AluI	AGCT	4 cut(s)	43, 590, 805, 845
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	3 cut(s)	352, 446, 465
AlwI	GGATC	2 cut(s)	369, 566
AlwNI	CAGNNNCTG	1 cut(s)	623
ApeKI	GCWGC	2 cut(s)	587, 845
ApoI	RAATTY	2 cut(s)	139, 368
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
AseI	ATTAAT	1 cut(s)	669
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	292, 517
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	1 cut(s)	337
AvaII	GGWCC	2 cut(s)	292, 517
BaeI	ACNNNNGTAYC	2 cut(s)	186, 219
Bbv12I	GWGCWC	1 cut(s)	653
BbvI	GCAGC	2 cut(s)	599, 832
BccI	CCATC	2 cut(s)	511, 670
BcgI	CGANNNNNNTGC	2 cut(s)	576, 610
BciT130I	CCWGG	1 cut(s)	686
BclI	TGATCA	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	3 cut(s)	352, 446, 465
BfaI	CTAG	2 cut(s)	552, 755
BfmI	CTRYAG	1 cut(s)	846
BfrI	CTTAAG	1 cut(s)	455
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	2 cut(s)	588, 846
BlsI	GCNGC	2 cut(s)	589, 847
Bme1390I	CCNGG	2 cut(s)	578, 686
Bme18I	GGWCC	2 cut(s)	292, 517
BmgT120I	GGNCC	2 cut(s)	292, 517
BmiI	GGNNCC	2 cut(s)	261, 294
BmrFI	CCNGG	2 cut(s)	578, 686
BmrI	ACTGGG	2 cut(s)	55, 284
BmsI	GCATC	2 cut(s)	545, 903
BmuI	ACTGGG	2 cut(s)	55, 284
BplI	GAGNNNNNCTC	4 cut(s)	114, 146, 244, 276
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	578
BsaI	GGTCTC	2 cut(s)	446, 465
BsaJI	CCNNGG	3 cut(s)	12, 576, 684
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 509
Bse1I	ACTGG	4 cut(s)	61, 279, 327, 741
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	686
BseDI	CCNNGG	3 cut(s)	12, 576, 684
BseGI	GGATG	4 cut(s)	70, 662, 918, 922
BseLI	CCNNNNNNNGG	2 cut(s)	37, 509
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	110, 145
BseNI	ACTGG	4 cut(s)	61, 279, 327, 741
BseRI	GAGGAG	1 cut(s)	791
BseXI	GCAGC	2 cut(s)	599, 832
BseYI	CCCAGC	1 cut(s)	908
BsiHKAI	GWGCWC	1 cut(s)	653
BsiSI	CCGG	1 cut(s)	578
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	37, 509
BsmAI	GTCTC	3 cut(s)	352, 446, 465
BsmFI	GGGAC	1 cut(s)	278
Bso31I	GGTCTC	2 cut(s)	446, 465
Bsp1286I	GDGCHC	1 cut(s)	653
Bsp143I	GATC	5 cut(s)	67, 205, 361, 529, 571
BspACI	CCGC	2 cut(s)	31, 183
BspCNI	CTCAG	2 cut(s)	109, 144
BspLI	GGNNCC	2 cut(s)	261, 294
BspMAI	CTGCAG	1 cut(s)	850
BspPI	GGATC	2 cut(s)	369, 566
BspQI	GCTCTTC	1 cut(s)	795
BspTI	CTTAAG	1 cut(s)	455
BspTNI	GGTCTC	2 cut(s)	446, 465
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	4 cut(s)	61, 279, 327, 741
BssECI	CCNNGG	3 cut(s)	12, 576, 684
BssMI	GATC	5 cut(s)	67, 205, 361, 529, 571
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	686
Bst4CI	ACNGT	4 cut(s)	21, 88, 619, 920
Bst6I	CTCTTC	2 cut(s)	155, 795
BstAFI	CTTAAG	1 cut(s)	455
BstC8I	GCNNGC	3 cut(s)	27, 31, 340
BstDEI	CTNAG	4 cut(s)	96, 131, 657, 936
BstF5I	GGATG	4 cut(s)	70, 662, 918, 922
BstKTI	GATC	5 cut(s)	70, 208, 364, 532, 574
BstMAI	GTCTC	3 cut(s)	352, 446, 465
BstMBI	GATC	5 cut(s)	67, 205, 361, 529, 571
BstNI	CCWGG	1 cut(s)	686
BstNSI	RCATGY	2 cut(s)	342, 418
BstSCI	CCNGG	2 cut(s)	576, 684
BstSFI	CTRYAG	1 cut(s)	846
BstV1I	GCAGC	2 cut(s)	599, 832
BstX2I	RGATCY	2 cut(s)	205, 571
BstYI	RGATCY	2 cut(s)	205, 571
BtsCI	GGATG	4 cut(s)	70, 662, 918, 922
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	4 cut(s)	272, 320, 882, 916
Cac8I	GCNNGC	3 cut(s)	27, 31, 340
CaiI	CAGNNNCTG	1 cut(s)	623
Cfr13I	GGNCC	2 cut(s)	292, 517
CviAII	CATG	3 cut(s)	339, 415, 794
DdeI	CTNAG	4 cut(s)	96, 131, 657, 936
DpnI	GATC	5 cut(s)	69, 207, 363, 531, 573
DpnII	GATC	5 cut(s)	67, 205, 361, 529, 571
DraI	TTTAAA	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	155, 795
EarI	CTCTTC	2 cut(s)	155, 795
Eco130I	CCWWGG	1 cut(s)	12
Eco31I	GGTCTC	2 cut(s)	446, 465
Eco47I	GGWCC	2 cut(s)	292, 517
Eco57I	CTGAAG	2 cut(s)	272, 285
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	684
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	3 cut(s)	342, 418, 797
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	3 cut(s)	338, 414, 793
FauI	CCCGC	1 cut(s)	38
FauNDI	CATATG	1 cut(s)	481
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	588, 846
FokI	GGATG	4 cut(s)	57, 649, 909, 925
Fsp4HI	GCNGC	2 cut(s)	588, 846
FspBI	CTAG	2 cut(s)	552, 755
GluI	GCNGC	2 cut(s)	588, 846
GsaI	CCCAGC	1 cut(s)	912
HapII	CCGG	1 cut(s)	578
Hin1II	CATG	3 cut(s)	342, 418, 797
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	4 cut(s)	129, 332, 740, 900
HpaII	CCGG	1 cut(s)	578
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	4 cut(s)	128, 328, 487, 639
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	5 cut(s)	148, 263, 380, 443, 527
Hpy8I	GTNNAC	4 cut(s)	128, 328, 487, 639
HpyAV	CCTTC	3 cut(s)	145, 508, 890
HpyCH4III	ACNGT	4 cut(s)	21, 88, 619, 920
HpyCH4V	TGCA	7 cut(s)	338, 342, 536, 848, 856, 887, 916
HpyF3I	CTNAG	4 cut(s)	96, 131, 657, 936
Hsp92II	CATG	3 cut(s)	342, 418, 797
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	5 cut(s)	67, 205, 361, 529, 571
LguI	GCTCTTC	1 cut(s)	795
LmnI	GCTCC	2 cut(s)	40, 265
Lsp1109I	GCAGC	2 cut(s)	599, 832
LweI	GCATC	2 cut(s)	545, 903
MaeI	CTAG	2 cut(s)	552, 755
MaeIII	GTNAC	2 cut(s)	307, 629
MalI	GATC	5 cut(s)	69, 207, 363, 531, 573
MboI	GATC	5 cut(s)	67, 205, 361, 529, 571
MboII	GAAGA	5 cut(s)	172, 278, 385, 741, 812
MflI	RGATCY	2 cut(s)	205, 571
MhlI	GDGCHC	1 cut(s)	653
MluCI	AATT	7 cut(s)	139, 368, 462, 812, 828, 839, 851
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	3 cut(s)	91, 339, 694
MnlI	CCTC	8 cut(s)	85, 116, 219, 487, 487, 534, 604, 769
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	7 cut(s)	35, 372, 456, 465, 669, 786, 831
MslI	CAYNNNNRTG	2 cut(s)	644, 866
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	1 cut(s)	578
MspR9I	CCNGG	2 cut(s)	578, 686
MvaI	CCWGG	1 cut(s)	686
NciI	CCSGG	1 cut(s)	578
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	5 cut(s)	67, 205, 361, 529, 571
NlaIII	CATG	3 cut(s)	342, 418, 797
NlaIV	GGNNCC	2 cut(s)	261, 294
NspI	RCATGY	2 cut(s)	342, 418
PaeI	GCATGC	1 cut(s)	342
PciI	ACATGT	1 cut(s)	414
PciSI	GCTCTTC	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	332, 740, 900
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	2 cut(s)	589, 847
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PpuMI	RGGWCCY	1 cut(s)	292
PscI	ACATGT	1 cut(s)	414
PshBI	ATTAAT	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	684
PspFI	CCCAGC	1 cut(s)	908
PspGI	CCWGG	1 cut(s)	684
PspN4I	GGNNCC	2 cut(s)	261, 294
PspPI	GGNCC	2 cut(s)	292, 517
PspPPI	RGGWCCY	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	850
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	205, 571
RseI	CAYNNNNRTG	2 cut(s)	644, 866
SapI	GCTCTTC	1 cut(s)	795
SaqAI	TTAA	7 cut(s)	35, 372, 456, 465, 669, 786, 831
SatI	GCNGC	2 cut(s)	588, 846
Sau3AI	GATC	5 cut(s)	67, 205, 361, 529, 571
Sau96I	GGNCC	2 cut(s)	292, 517
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	578, 686
SduI	GDGCHC	1 cut(s)	653
SfaNI	GCATC	2 cut(s)	545, 903
SfcI	CTRYAG	1 cut(s)	846
SinI	GGWCC	2 cut(s)	292, 517
SmiMI	CAYNNNNRTG	2 cut(s)	644, 866
SmlI	CTYRAG	2 cut(s)	250, 455
SmoI	CTYRAG	2 cut(s)	250, 455
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	7 cut(s)	139, 368, 462, 812, 828, 839, 851
SsiI	CCGC	2 cut(s)	31, 183
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	2 cut(s)	552, 755
StyD4I	CCNGG	2 cut(s)	576, 684
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	4 cut(s)	21, 88, 619, 920
TaqI	TCGA	3 cut(s)	407, 444, 596
TasI	AATT	7 cut(s)	139, 368, 462, 812, 828, 839, 851
TfiI	GAWTC	3 cut(s)	332, 740, 900
Tru1I	TTAA	7 cut(s)	35, 372, 456, 465, 669, 786, 831
Tru9I	TTAA	7 cut(s)	35, 372, 456, 465, 669, 786, 831
TscAI	CASTG	4 cut(s)	279, 327, 889, 923
TseI	GCWGC	2 cut(s)	587, 845
TspGWI	ACGGA	3 cut(s)	537, 547, 788
TspRI	CASTG	4 cut(s)	279, 327, 889, 923
Van91I	CCANNNNNTGG	1 cut(s)	509
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	292, 517
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	2 cut(s)	139, 368
XceI	RCATGY	2 cut(s)	342, 418
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	2 cut(s)	552, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.