Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006234

Physical Location & Seq

Genomic Coordinates Reverse (-)

66321336 .. 66322449

Gene Structure 1114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27714

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGAAAGAGGTGAACGAAAGTCGAAAGGGCCAAAAGGCTGGTGGTGGTGCGTGGGTTGAGAGAGAGCGAAGGAAGAAGATGAAGGATATGTTCTCTTCCCTTCATGCCTTGCTTCCTCAGCTTCCAGCTAAGGCTGATCATTGCACCATTGTTGATGAGGCAGTGAGATATATCAAATCCCTCGAGCACACTCTACAAACAGCGCAAAAGCAAAGGCTTACTAAATTGCGGAGTAGCGCTTCTACATCCATTACATCGAAAACAGAAGCTAGGAGTGATGCTGGTGTTACAAGAAAAGCGTTTTTGGCTGATCATTTTCAGGAGGAGGAGGATCGACCATCAAAGAAGTTGGCTTGCGGAAACAATCCATCACCTACTTCTCTTGATTCTCAGCAGGCCAGCTGCTTCAAGACGTGGTTTTCCCCTAATATTGTGGTGAACATATGCGGCAATGAGGCTCACGTTAGTGTTTGTTCGCCAAGAAGGCCAGGGCTCCTCAGTACCGTCTTCTACATACTAGAAAAGCATAAACTGGATGTTATATCTGCTCACATTTCCTCGGATCAGCATCGCTGCATGTACATGATCCACGCTCATTATGTGAGTCCGCAGAATTTCTTGCTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

210

Amino Acids

23.62

Weight (kDa)

9.25

Isoelectric Point (pI)

66.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	14 - 69	1e-05	Transcription factor SAC51 bHLH domain
HLH	PF00010	20 - 63	1.2e-09	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	145 - 197	3e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49770
fragaria_vesca	FvH4_2g05810
malus_domestica	MD05G1083300.v1.1 MD15G1079900.v1.1
prunus_persica	Prupe.1G432900_v2.0.a1 Prupe.8G127700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257881 RchiOBHm_Chr6g0308241
rosa_laevigata	RLG00000010655 RLG00000014735
rosa_multiflora	Rmu_co8385913.1_g000001 Rmu_sc0000077.1_g000033
rosa_roxburghii	Rroxscaffold_7G00209030
rosa_rugosa	Rorug05G0567100 Rorug06G0365300 Rorug06G0365300 Rorug06G0365400
rosa_samantha	Rh6AG084200 Rh6AG474300 Rh6BG078800 Rh6BG485000 Rh6CG073500 Rh6CG490000 Rh6DG070400 Rh6DG476400
rosa_wichuraiana	Rw6G007590 Rw6G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	232, 360, 450, 611
AclWI	GGATC	3 cut(s)	342, 573, 583
AcsI	RAATTY	1 cut(s)	616
AfaI	GTAC	2 cut(s)	505, 584
AfeI	AGCGCT	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	412
AjiI	CACGTC	1 cut(s)	417
AjnI	CCWGG	1 cut(s)	490
AleI	CACNNNNGTG	1 cut(s)	468
AluBI	AGCT	4 cut(s)	124, 131, 272, 405
AluI	AGCT	4 cut(s)	124, 131, 272, 405
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	342, 573, 583
Ama87I	CYCGRG	1 cut(s)	185
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	3 cut(s)	31, 399, 488
ApeKI	GCWGC	2 cut(s)	405, 576
ApoI	RAATTY	1 cut(s)	616
AspLEI	GCGC	2 cut(s)	208, 242
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	3 cut(s)	25, 366, 451
AvaI	CYCGRG	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	392, 563
BccI	CCATC	2 cut(s)	349, 379
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	2 cut(s)	139, 313
BfaI	CTAG	2 cut(s)	273, 521
BfoI	RGCGCY	1 cut(s)	243
BglI	GCCNNNNNGGC	1 cut(s)	487
BisI	GCNGC	3 cut(s)	406, 451, 577
BlsI	GCNGC	3 cut(s)	407, 452, 578
Bme1390I	CCNGG	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	497
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	271, 580
BpiI	GAAGAC	1 cut(s)	502
Bpu10I	CCTNAGC	2 cut(s)	120, 132
BsaBI	GATNNNNATC	1 cut(s)	570
BsaJI	CCNNGG	2 cut(s)	491, 561
Bse1I	ACTGG	1 cut(s)	540
Bse3DI	GCAATG	2 cut(s)	142, 460
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	491, 561
BseGI	GGATG	2 cut(s)	248, 544
BseJI	GATNNNNATC	1 cut(s)	570
BseMI	GCAATG	2 cut(s)	142, 460
BseMII	CTCAG	3 cut(s)	134, 407, 514
BseNI	ACTGG	1 cut(s)	540
BseRI	GAGGAG	3 cut(s)	341, 344, 488
BseXI	GCAGC	2 cut(s)	392, 563
BshFI	GGCC	3 cut(s)	33, 401, 490
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	185
BsnI	GGCC	3 cut(s)	33, 401, 490
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	192, 498
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	5 cut(s)	139, 313, 334, 565, 588
BspACI	CCGC	4 cut(s)	232, 360, 450, 611
BspANI	GGCC	3 cut(s)	33, 401, 490
BspCNI	CTCAG	3 cut(s)	133, 406, 513
BspLI	GGNNCC	1 cut(s)	497
BspPI	GGATC	3 cut(s)	342, 573, 583
BsrDI	GCAATG	2 cut(s)	142, 460
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	540
BssECI	CCNNGG	2 cut(s)	491, 561
BssMI	GATC	5 cut(s)	139, 313, 334, 565, 588
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	3 cut(s)	358, 399, 403
BstDEI	CTNAG	4 cut(s)	120, 132, 393, 500
BstF5I	GGATG	2 cut(s)	248, 544
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	2 cut(s)	208, 242
BstKTI	GATC	5 cut(s)	142, 316, 337, 568, 591
BstMBI	GATC	5 cut(s)	139, 313, 334, 565, 588
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 308, 487
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	490
BstV1I	GCAGC	2 cut(s)	392, 563
BstV2I	GAAGAC	1 cut(s)	502
BstXI	CCANNNNNNTGG	1 cut(s)	41
BsuRI	GGCC	3 cut(s)	33, 401, 490
BtgZI	GCGATG	1 cut(s)	557
BtrI	CACGTC	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	248, 544
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	358, 399, 403
CfoI	GCGC	2 cut(s)	208, 242
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	504, 583
CviAII	CATG	3 cut(s)	107, 580, 586
CviQI	GTAC	2 cut(s)	504, 583
DdeI	CTNAG	4 cut(s)	120, 132, 393, 500
DpnI	GATC	5 cut(s)	141, 315, 336, 567, 590
DpnII	GATC	5 cut(s)	139, 313, 334, 565, 588
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	498
Eco47III	AGCGCT	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	498
FaeI	CATG	3 cut(s)	110, 583, 589
FatI	CATG	3 cut(s)	106, 579, 585
FauNDI	CATATG	1 cut(s)	446
FbaI	TGATCA	2 cut(s)	139, 313
Fnu4HI	GCNGC	3 cut(s)	406, 451, 577
FokI	GGATG	2 cut(s)	235, 551
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	3 cut(s)	406, 451, 577
FspBI	CTAG	2 cut(s)	273, 521
GlaI	GCGC	2 cut(s)	207, 241
GluI	GCNGC	3 cut(s)	406, 451, 577
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	33, 401, 490
HhaI	GCGC	2 cut(s)	208, 242
Hin1II	CATG	3 cut(s)	110, 583, 589
Hin6I	GCGC	2 cut(s)	206, 240
HinP1I	GCGC	2 cut(s)	206, 240
HinfI	GANTC	2 cut(s)	389, 607
HphI	GGTGA	3 cut(s)	25, 366, 451
Hpy166II	GTNNAC	2 cut(s)	16, 442
Hpy188I	TCNGA	1 cut(s)	565
Hpy188III	TCNNGA	3 cut(s)	323, 386, 412
Hpy8I	GTNNAC	2 cut(s)	16, 442
HpyAV	CCTTC	4 cut(s)	66, 79, 113, 480
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	2 cut(s)	416, 465
HpyCH4V	TGCA	2 cut(s)	147, 579
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 308, 487
HpyF3I	CTNAG	4 cut(s)	120, 132, 393, 500
HpySE526I	ACGT	2 cut(s)	416, 465
Hsp92II	CATG	3 cut(s)	110, 583, 589
HspAI	GCGC	2 cut(s)	206, 240
Ksp22I	TGATCA	2 cut(s)	139, 313
Kzo9I	GATC	5 cut(s)	139, 313, 334, 565, 588
LmnI	GCTCC	1 cut(s)	501
LpnPI	CCDG	9 cut(s)	27, 141, 270, 308, 383, 415, 477, 504, 521
Lsp1109I	GCAGC	2 cut(s)	392, 563
LweI	GCATC	2 cut(s)	271, 580
MaeI	CTAG	2 cut(s)	273, 521
MaeII	ACGT	2 cut(s)	416, 465
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	5 cut(s)	141, 315, 336, 567, 590
MboI	GATC	5 cut(s)	139, 313, 334, 565, 588
MboII	GAAGA	4 cut(s)	88, 90, 91, 502
MhlI	GDGCHC	2 cut(s)	192, 498
MluCI	AATT	3 cut(s)	227, 616, 628
MlyI	GAGTC	1 cut(s)	616
MseI	TTAA	1 cut(s)	627
MslI	CAYNNNNRTG	2 cut(s)	468, 584
MspA1I	CMGCKG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	3 cut(s)	121, 308, 487
NdeI	CATATG	1 cut(s)	446
NdeII	GATC	5 cut(s)	139, 313, 334, 565, 588
NlaIII	CATG	3 cut(s)	110, 583, 589
NlaIV	GGNNCC	1 cut(s)	497
NspI	RCATGY	1 cut(s)	583
OliI	CACNNNNGTG	1 cut(s)	468
PaeR7I	CTCGAG	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	3 cut(s)	407, 452, 578
PleI	GAGTC	1 cut(s)	615
PpsI	GAGTC	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	497
PspPI	GGNCC	1 cut(s)	31
PspXI	VCTCGAGB	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	405
RsaI	GTAC	2 cut(s)	505, 584
RsaNI	GTAC	2 cut(s)	504, 583
RseI	CAYNNNNRTG	2 cut(s)	468, 584
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	3 cut(s)	406, 451, 577
Sau3AI	GATC	5 cut(s)	139, 313, 334, 565, 588
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	616
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	2 cut(s)	192, 498
SetI	ASST	8 cut(s)	15, 126, 133, 274, 379, 407, 419, 468
SfaNI	GCATC	2 cut(s)	271, 580
Sfr274I	CTCGAG	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	185
SmiMI	CAYNNNNRTG	2 cut(s)	468, 584
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	3 cut(s)	227, 616, 628
SsiI	CCGC	4 cut(s)	232, 360, 450, 611
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	2 cut(s)	273, 521
StyD4I	CCNGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	2 cut(s)	419, 468
TaqI	TCGA	4 cut(s)	25, 186, 260, 337
TasI	AATT	3 cut(s)	227, 616, 628
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	2 cut(s)	405, 576
TspDTI	ATGAA	2 cut(s)	95, 98
TspRI	CASTG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	616
XceI	RCATGY	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	185
XspI	CTAG	2 cut(s)	273, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.