Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006234

Physical Location & Seq

Genomic Coordinates Reverse (-)

64199002 .. 64200293

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG476400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGAAAGAGGTGAACGAAAGTCGAAAGGGCCGAAAGGCTGGTGGTGGTGCGTGGGTTGAGAGAGAGCGAAGGAAGAAGATGAAGGATATGTTCTCTTCCCTTCATGCCTTGCTTCCTCAGCTTCCAGCTAAGGCTGATCATTGTACCATTGTTGATGAGGCAGTGAGATATATCAAATCCCTCGAGCACACTCTACAAACAGCGCAAAATAAGCAAAGGCTTGCTAAATTGCGGAGTAGCGCTTCTTCATCCATTATTACATCGAAAACAGAAGCTAGGAGCCTAGGAGTACGTGATGGTGTTACAAGAAAAGCGTTTTTAGCTGATCATTTTCAGGAGGAGGAGGAGGATCGACCATCAAAGAAGTTGGCTTACGGAAACAATCCATCACCTACTTCTCTTGATTCTCAGCAGGCCAGCTGCTTCAAGACGTGGTTTTCCCCTAATATTGTGGTGAACATATGCGGCAATGAGGCTCACGTAAGTGTTTGTTCGCCAAGAAGGCCAGGGCTCCTCAGTACCGTCTTCTACATACTAGAAAAGCATAAACTGGATGTTATATCTGCTCACATTTCCTCGGATCAGCATCGTTGCATGTACATGATCCACGCTCATTATGCTGGTGGAGCTTGTGATGATAATCTTCCAACTGGGGCGTTATCAGTAGAGGACACTTTCAATCTAGCAGCAGGTGAACTGAACCTGTGCCTCTTTTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

241

Amino Acids

26.73

Weight (kDa)

8.64

Isoelectric Point (pI)

64.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	20 - 63	1.6e-09	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	151 - 203	3.2e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49770
fragaria_vesca	FvH4_2g05810
malus_domestica	MD05G1083300.v1.1 MD15G1079900.v1.1
prunus_persica	Prupe.1G432900_v2.0.a1 Prupe.8G127700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257881 RchiOBHm_Chr6g0308241
rosa_laevigata	RLG00000010655 RLG00000014735
rosa_multiflora	Rmu_co8385913.1_g000001 Rmu_sc0000077.1_g000033
rosa_roxburghii	Rroxscaffold_7G00209030
rosa_rugosa	Rorug05G0567100 Rorug06G0365300 Rorug06G0365300 Rorug06G0365400
rosa_samantha	Rh6AG084200 Rh6AG474300 Rh6BG078800 Rh6BG485000 Rh6CG073500 Rh6CG490000 Rh6DG070400 Rh6DG476400
rosa_wichuraiana	Rw6G007590 Rw6G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	683
Acc36I	ACCTGC	1 cut(s)	683
AciI	CCGC	2 cut(s)	235, 468
AclWI	GGATC	3 cut(s)	360, 591, 601
AfaI	GTAC	4 cut(s)	148, 294, 523, 602
AfeI	AGCGCT	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	430, 682
AjiI	CACGTC	1 cut(s)	435
AjnI	CCWGG	1 cut(s)	508
AleI	CACNNNNGTG	1 cut(s)	486
AluBI	AGCT	6 cut(s)	124, 131, 278, 326, 423, 632
AluI	AGCT	6 cut(s)	124, 131, 278, 326, 423, 632
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	360, 591, 601
Ama87I	CYCGRG	1 cut(s)	185
Aor51HI	AGCGCT	1 cut(s)	244
AoxI	GGCC	3 cut(s)	31, 417, 506
ApeKI	GCWGC	2 cut(s)	423, 689
AspA2I	CCTAGG	1 cut(s)	286
AspLEI	GCGC	2 cut(s)	208, 245
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	4 cut(s)	25, 384, 469, 707
AvaI	CYCGRG	1 cut(s)	185
AvrII	CCTAGG	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	516
BarI	GAAGNNNNNNTAC	4 cut(s)	232, 264, 359, 391
BbsI	GAAGAC	1 cut(s)	520
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	410, 701
BccI	CCATC	3 cut(s)	293, 367, 397
BciT130I	CCWGG	1 cut(s)	510
BclI	TGATCA	2 cut(s)	139, 328
BfaI	CTAG	4 cut(s)	279, 287, 539, 686
BfoI	RGCGCY	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	683
BglI	GCCNNNNNGGC	1 cut(s)	505
BisI	GCNGC	3 cut(s)	424, 469, 690
BlnI	CCTAGG	1 cut(s)	286
BlsI	GCNGC	3 cut(s)	425, 470, 691
Bme1390I	CCNGG	1 cut(s)	510
BmeT110I	CYCGRG	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	284, 515
BmrFI	CCNGG	1 cut(s)	510
BmrI	ACTGGG	1 cut(s)	663
BmsI	GCATC	1 cut(s)	598
BmuI	ACTGGG	1 cut(s)	663
BpiI	GAAGAC	1 cut(s)	520
Bpu10I	CCTNAGC	2 cut(s)	120, 132
BsaAI	YACGTR	2 cut(s)	296, 484
BsaBI	GATNNNNATC	2 cut(s)	588, 642
BsaJI	CCNNGG	3 cut(s)	286, 509, 579
Bse1I	ACTGG	2 cut(s)	558, 658
Bse3DI	GCAATG	1 cut(s)	478
Bse8I	GATNNNNATC	2 cut(s)	588, 642
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	3 cut(s)	286, 509, 579
BseGI	GGATG	2 cut(s)	251, 562
BseJI	GATNNNNATC	2 cut(s)	588, 642
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	3 cut(s)	134, 425, 532
BseNI	ACTGG	2 cut(s)	558, 658
BseRI	GAGGAG	4 cut(s)	356, 359, 362, 506
BseXI	GCAGC	2 cut(s)	410, 701
BshFI	GGCC	3 cut(s)	33, 419, 508
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	185
BsnI	GGCC	3 cut(s)	33, 419, 508
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	192, 516
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	5 cut(s)	139, 328, 352, 583, 606
BspACI	CCGC	2 cut(s)	235, 468
BspANI	GGCC	3 cut(s)	33, 419, 508
BspCNI	CTCAG	3 cut(s)	133, 424, 531
BspLI	GGNNCC	2 cut(s)	284, 515
BspMI	ACCTGC	1 cut(s)	683
BspPI	GGATC	3 cut(s)	360, 591, 601
BsrDI	GCAATG	1 cut(s)	478
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	558, 658
BssECI	CCNNGG	3 cut(s)	286, 509, 579
BssMI	GATC	5 cut(s)	139, 328, 352, 583, 606
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	600
BstBAI	YACGTR	2 cut(s)	296, 484
BstC8I	GCNNGC	3 cut(s)	225, 417, 421
BstDEI	CTNAG	4 cut(s)	120, 132, 411, 518
BstF5I	GGATG	2 cut(s)	251, 562
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	2 cut(s)	208, 245
BstKTI	GATC	5 cut(s)	142, 331, 355, 586, 609
BstMBI	GATC	5 cut(s)	139, 328, 352, 583, 606
BstMWI	GCNNNNNNNGC	6 cut(s)	121, 214, 323, 505, 620, 629
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	1 cut(s)	508
BstV1I	GCAGC	2 cut(s)	410, 701
BstV2I	GAAGAC	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	33, 419, 508
BtrI	CACGTC	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	251, 562
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	3 cut(s)	225, 417, 421
CfoI	GCGC	2 cut(s)	208, 245
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	4 cut(s)	147, 293, 522, 601
CviAII	CATG	3 cut(s)	107, 598, 604
CviQI	GTAC	4 cut(s)	147, 293, 522, 601
DdeI	CTNAG	4 cut(s)	120, 132, 411, 518
DpnI	GATC	5 cut(s)	141, 330, 354, 585, 608
DpnII	GATC	5 cut(s)	139, 328, 352, 583, 606
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	516
Eco47III	AGCGCT	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	3 cut(s)	110, 601, 607
FatI	CATG	3 cut(s)	106, 597, 603
FauNDI	CATATG	1 cut(s)	464
FbaI	TGATCA	2 cut(s)	139, 328
Fnu4HI	GCNGC	3 cut(s)	424, 469, 690
FokI	GGATG	2 cut(s)	238, 569
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	3 cut(s)	424, 469, 690
FspBI	CTAG	4 cut(s)	279, 287, 539, 686
GlaI	GCGC	2 cut(s)	207, 244
GluI	GCNGC	3 cut(s)	424, 469, 690
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	33, 419, 508
HhaI	GCGC	2 cut(s)	208, 245
Hin1II	CATG	3 cut(s)	110, 601, 607
Hin6I	GCGC	2 cut(s)	206, 243
HinP1I	GCGC	2 cut(s)	206, 243
HinfI	GANTC	1 cut(s)	407
HphI	GGTGA	4 cut(s)	25, 384, 469, 707
Hpy166II	GTNNAC	3 cut(s)	16, 460, 698
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	4 cut(s)	338, 404, 430, 723
Hpy8I	GTNNAC	3 cut(s)	16, 460, 698
HpyAV	CCTTC	4 cut(s)	66, 79, 113, 498
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	3 cut(s)	295, 434, 483
HpyCH4V	TGCA	1 cut(s)	597
HpyF10VI	GCNNNNNNNGC	6 cut(s)	121, 214, 323, 505, 620, 629
HpyF3I	CTNAG	4 cut(s)	120, 132, 411, 518
HpySE526I	ACGT	3 cut(s)	295, 434, 483
Hsp92II	CATG	3 cut(s)	110, 601, 607
HspAI	GCGC	2 cut(s)	206, 243
Ksp22I	TGATCA	2 cut(s)	139, 328
Kzo9I	GATC	5 cut(s)	139, 328, 352, 583, 606
LmnI	GCTCC	3 cut(s)	282, 519, 629
Lsp1109I	GCAGC	2 cut(s)	410, 701
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	4 cut(s)	279, 287, 539, 686
MaeII	ACGT	3 cut(s)	295, 434, 483
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	5 cut(s)	141, 330, 354, 585, 608
MboI	GATC	5 cut(s)	139, 328, 352, 583, 606
MboII	GAAGA	6 cut(s)	88, 90, 91, 240, 520, 638
MhlI	GDGCHC	2 cut(s)	192, 516
MluCI	AATT	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	674
MslI	CAYNNNNRTG	2 cut(s)	486, 602
MspA1I	CMGCKG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	6 cut(s)	121, 214, 323, 505, 620, 629
NdeI	CATATG	1 cut(s)	464
NdeII	GATC	5 cut(s)	139, 328, 352, 583, 606
NlaIII	CATG	3 cut(s)	110, 601, 607
NlaIV	GGNNCC	2 cut(s)	284, 515
NspI	RCATGY	1 cut(s)	601
OliI	CACNNNNGTG	1 cut(s)	486
PaeR7I	CTCGAG	1 cut(s)	185
PaqCI	CACCTGC	1 cut(s)	683
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	3 cut(s)	425, 470, 691
Ppu21I	YACGTR	2 cut(s)	296, 484
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	284, 515
PspPI	GGNCC	1 cut(s)	31
PspXI	VCTCGAGB	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	423
RsaI	GTAC	4 cut(s)	148, 294, 523, 602
RsaNI	GTAC	4 cut(s)	147, 293, 522, 601
RseI	CAYNNNNRTG	2 cut(s)	486, 602
SatI	GCNGC	3 cut(s)	424, 469, 690
Sau3AI	GATC	5 cut(s)	139, 328, 352, 583, 606
Sau96I	GGNCC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	2 cut(s)	192, 516
SfaNI	GCATC	1 cut(s)	598
Sfr274I	CTCGAG	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	185
SmiMI	CAYNNNNRTG	2 cut(s)	486, 602
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	2 cut(s)	235, 468
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	4 cut(s)	279, 287, 539, 686
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	3 cut(s)	298, 437, 486
TaqI	TCGA	4 cut(s)	25, 186, 266, 355
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	407
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	2 cut(s)	423, 689
TspDTI	ATGAA	4 cut(s)	95, 98, 240, 708
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	171
XceI	RCATGY	1 cut(s)	601
XhoI	CTCGAG	1 cut(s)	185
XmaJI	CCTAGG	1 cut(s)	286
XspI	CTAG	4 cut(s)	279, 287, 539, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.