Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006234

Physical Location & Seq

Genomic Coordinates Forward (+)

76018706 .. 76019169

Gene Structure 464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0567100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCTCATTGGCCGGCGAGGACGAAGTGGAATGACATGGATTACCTGATAAGAGTTGCCGGTGACCGGACTGTGCCGGTTGAGGTTGGGAAAAATTACTTGTACCCGGAGTGGAAGCAAGAGCTTATTACGTTTTCGCAGTTTCTTGAGAGGATTCGGGGTAATGACTCTTCCTCTGGTGCCCCGACGTATCTTGCTCGGCACTCATTGTTTGATCAGATAAATGAGCTGCGAGAGGACATATTGTATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

84

Amino Acids

9.92

Weight (kDa)

5.58

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	2 - 80	4.3e-06	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49770
fragaria_vesca	FvH4_2g05810
malus_domestica	MD05G1083300.v1.1 MD15G1079900.v1.1
prunus_persica	Prupe.1G432900_v2.0.a1 Prupe.8G127700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257881 RchiOBHm_Chr6g0308241
rosa_laevigata	RLG00000010655 RLG00000014735
rosa_multiflora	Rmu_co8385913.1_g000001 Rmu_sc0000077.1_g000033
rosa_roxburghii	Rroxscaffold_7G00209030
rosa_rugosa	Rorug05G0567100 Rorug06G0365300 Rorug06G0365300 Rorug06G0365400
rosa_samantha	Rh6AG084200 Rh6AG474300 Rh6BG078800 Rh6BG485000 Rh6CG073500 Rh6CG490000 Rh6DG070400 Rh6DG476400
rosa_wichuraiana	Rw6G007590 Rw6G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	11
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	66
AluBI	AGCT	2 cut(s)	124, 229
AluI	AGCT	2 cut(s)	124, 229
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	229
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	154, 186
BbvI	GCAGC	1 cut(s)	216
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	107
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	107
BsaWI	WCCGGW	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	3 cut(s)	13, 59, 76
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	216
BshFI	GGCC	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	5 cut(s)	14, 60, 67, 77, 107
BslI	CCNNNNNNNGG	1 cut(s)	66
BsnI	GGCC	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	179
BsrFI	RCCGGY	3 cut(s)	13, 59, 76
BssAI	RCCGGY	3 cut(s)	13, 59, 76
BssMI	GATC	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	15
BstEII	GGTNACC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	15
Cfr10I	RCCGGY	3 cut(s)	13, 59, 76
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	4 cut(s)	5, 13, 124, 229
CviKI_1	RGCY	4 cut(s)	5, 13, 124, 229
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
FaeI	CATG	1 cut(s)	40
FaiI	YATR	2 cut(s)	38, 242
FatI	CATG	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	5 cut(s)	14, 60, 67, 77, 107
Hin1II	CATG	1 cut(s)	40
HinfI	GANTC	2 cut(s)	154, 167
HpaII	CCGG	5 cut(s)	14, 60, 67, 77, 107
HphI	GGTGA	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	2 cut(s)	146, 252
Hpy99I	CGWCG	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	131, 188
HpySE526I	ACGT	2 cut(s)	131, 188
Hsp92II	CATG	1 cut(s)	40
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	214
LpnPI	CCDG	7 cut(s)	27, 59, 73, 80, 90, 120, 162
Lsp1109I	GCAGC	1 cut(s)	216
MaeII	ACGT	2 cut(s)	131, 188
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	5 cut(s)	12, 76, 144, 184, 229
MroNI	GCCGGC	1 cut(s)	13
MspI	CCGG	5 cut(s)	14, 60, 67, 77, 107
MspR9I	CCNGG	1 cut(s)	107
NaeI	GCCGGC	1 cut(s)	15
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	1 cut(s)	214
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	181
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	62
PdiI	GCCGGC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PspEI	GGTNACC	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	181
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	6 cut(s)	48, 87, 126, 134, 191, 231
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	2 cut(s)	134, 191
TasI	AATT	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	154
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.