Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006234

Physical Location & Seq

Genomic Coordinates Reverse (-)

65596676 .. 65597960

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG474300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGAAAGAGGTGAACGAAAGTCGAAAGGGCCAAAAGGCTGGTGGTGGTGCGTGGGTTGAGAGAGAGCGAAGGAAGAAGATGAAGGATATGTTCTCTTCCCTTCATGCCTTGCTTCCTCAGCTTCCAGCTAAGGCTGATCATTGCACCATTGTTGATGAGGCAGTGAGATATATCAAATCCCTCGAGCACACTCTACAAACAGCGCAAAAGCAAAGGCTTACTAAATTGCGGAGTAGCGCTTCTACATCCATTACATCGAAAACAGAAGCTAGGAGTGATGCTGGTGTTACAAGAAAAGCGTTTTTGGCTGATCATTTTCAGGAGGAGGAGGATCGACCATCAAAGAAGTTGGCTTGCGGAAACAATCCATCACCTACTTCTCTTGATTCTCAGCAGGCCAGCTGCTTCAAGACGTGGTTTTCCCCTAATATTGTGGTGAACATATGCGGCAATGAGGCTCACGTTAGTGTTTGTTCGCCAAGAAGGCCAGGGCTCCTCAGTACCGTCTTCTACATACTAGAAAAGCATAAACTGGATGTTATATCTGCTCACATTTCCTCGGATCAGCATCGCTGCATGTACATGATCCACGCTCATTATGCTGGTGGAGCTTGTGATGATACTCTTCCAGCTGGGGCGTTATCAGTAGAGGACACTTTCAATCTAGCAGCAGGTGAACTGAACCTGTGCCTCTTTTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

235

Amino Acids

25.94

Weight (kDa)

8.39

Isoelectric Point (pI)

64.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	20 - 63	1.5e-09	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	145 - 197	2.9e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49770
fragaria_vesca	FvH4_2g05810
malus_domestica	MD05G1083300.v1.1 MD15G1079900.v1.1
prunus_persica	Prupe.1G432900_v2.0.a1 Prupe.8G127700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257881 RchiOBHm_Chr6g0308241
rosa_laevigata	RLG00000010655 RLG00000014735
rosa_multiflora	Rmu_co8385913.1_g000001 Rmu_sc0000077.1_g000033
rosa_roxburghii	Rroxscaffold_7G00209030
rosa_rugosa	Rorug05G0567100 Rorug06G0365300 Rorug06G0365300 Rorug06G0365400
rosa_samantha	Rh6AG084200 Rh6AG474300 Rh6BG078800 Rh6BG485000 Rh6CG073500 Rh6CG490000 Rh6DG070400 Rh6DG476400
rosa_wichuraiana	Rw6G007590 Rw6G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	665
Acc36I	ACCTGC	1 cut(s)	665
AciI	CCGC	3 cut(s)	232, 360, 450
AclWI	GGATC	3 cut(s)	342, 573, 583
AfaI	GTAC	2 cut(s)	505, 584
AfeI	AGCGCT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	412, 664
AjiI	CACGTC	1 cut(s)	417
AjnI	CCWGG	1 cut(s)	490
AleI	CACNNNNGTG	1 cut(s)	468
AluBI	AGCT	6 cut(s)	124, 131, 272, 405, 614, 635
AluI	AGCT	6 cut(s)	124, 131, 272, 405, 614, 635
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	342, 573, 583
Ama87I	CYCGRG	1 cut(s)	185
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	3 cut(s)	31, 399, 488
ApeKI	GCWGC	3 cut(s)	405, 576, 671
AspLEI	GCGC	2 cut(s)	208, 242
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	4 cut(s)	25, 366, 451, 689
AvaI	CYCGRG	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	392, 563, 683
BccI	CCATC	2 cut(s)	349, 379
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	2 cut(s)	139, 313
BfaI	CTAG	3 cut(s)	273, 521, 668
BfoI	RGCGCY	1 cut(s)	243
BfuAI	ACCTGC	1 cut(s)	665
BglI	GCCNNNNNGGC	1 cut(s)	487
BisI	GCNGC	4 cut(s)	406, 451, 577, 672
BlsI	GCNGC	4 cut(s)	407, 452, 578, 673
Bme1390I	CCNGG	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	497
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	271, 580
BpiI	GAAGAC	1 cut(s)	502
Bpu10I	CCTNAGC	2 cut(s)	120, 132
BsaBI	GATNNNNATC	1 cut(s)	570
BsaJI	CCNNGG	2 cut(s)	491, 561
Bse1I	ACTGG	1 cut(s)	540
Bse3DI	GCAATG	2 cut(s)	142, 460
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	491, 561
BseGI	GGATG	2 cut(s)	248, 544
BseJI	GATNNNNATC	1 cut(s)	570
BseMI	GCAATG	2 cut(s)	142, 460
BseMII	CTCAG	3 cut(s)	134, 407, 514
BseNI	ACTGG	1 cut(s)	540
BseRI	GAGGAG	3 cut(s)	341, 344, 488
BseXI	GCAGC	3 cut(s)	392, 563, 683
BseYI	CCCAGC	1 cut(s)	635
BshFI	GGCC	3 cut(s)	33, 401, 490
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	185
BsnI	GGCC	3 cut(s)	33, 401, 490
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	192, 498
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	5 cut(s)	139, 313, 334, 565, 588
BspACI	CCGC	3 cut(s)	232, 360, 450
BspANI	GGCC	3 cut(s)	33, 401, 490
BspCNI	CTCAG	3 cut(s)	133, 406, 513
BspLI	GGNNCC	1 cut(s)	497
BspMI	ACCTGC	1 cut(s)	665
BspPI	GGATC	3 cut(s)	342, 573, 583
BsrDI	GCAATG	2 cut(s)	142, 460
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	540
BssECI	CCNNGG	2 cut(s)	491, 561
BssMI	GATC	5 cut(s)	139, 313, 334, 565, 588
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	2 cut(s)	103, 633
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	3 cut(s)	358, 399, 403
BstDEI	CTNAG	4 cut(s)	120, 132, 393, 500
BstF5I	GGATG	2 cut(s)	248, 544
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	2 cut(s)	208, 242
BstKTI	GATC	5 cut(s)	142, 316, 337, 568, 591
BstMBI	GATC	5 cut(s)	139, 313, 334, 565, 588
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 308, 487, 602, 611
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	490
BstV1I	GCAGC	3 cut(s)	392, 563, 683
BstV2I	GAAGAC	1 cut(s)	502
BstXI	CCANNNNNNTGG	1 cut(s)	41
BsuRI	GGCC	3 cut(s)	33, 401, 490
BtgZI	GCGATG	1 cut(s)	557
BtrI	CACGTC	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	248, 544
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	665
Cac8I	GCNNGC	3 cut(s)	358, 399, 403
CfoI	GCGC	2 cut(s)	208, 242
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	504, 583
CviAII	CATG	3 cut(s)	107, 580, 586
CviQI	GTAC	2 cut(s)	504, 583
DdeI	CTNAG	4 cut(s)	120, 132, 393, 500
DpnI	GATC	5 cut(s)	141, 315, 336, 567, 590
DpnII	GATC	5 cut(s)	139, 313, 334, 565, 588
Eam1104I	CTCTTC	2 cut(s)	103, 633
EarI	CTCTTC	2 cut(s)	103, 633
Eco24I	GRGCYC	1 cut(s)	498
Eco47III	AGCGCT	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	498
FaeI	CATG	3 cut(s)	110, 583, 589
FatI	CATG	3 cut(s)	106, 579, 585
FauNDI	CATATG	1 cut(s)	446
FbaI	TGATCA	2 cut(s)	139, 313
Fnu4HI	GCNGC	4 cut(s)	406, 451, 577, 672
FokI	GGATG	2 cut(s)	235, 551
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	4 cut(s)	406, 451, 577, 672
FspBI	CTAG	3 cut(s)	273, 521, 668
GlaI	GCGC	2 cut(s)	207, 241
GluI	GCNGC	4 cut(s)	406, 451, 577, 672
GsaI	CCCAGC	1 cut(s)	639
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	33, 401, 490
HhaI	GCGC	2 cut(s)	208, 242
Hin1II	CATG	3 cut(s)	110, 583, 589
Hin6I	GCGC	2 cut(s)	206, 240
HinP1I	GCGC	2 cut(s)	206, 240
HinfI	GANTC	1 cut(s)	389
HphI	GGTGA	4 cut(s)	25, 366, 451, 689
Hpy166II	GTNNAC	3 cut(s)	16, 442, 680
Hpy188I	TCNGA	1 cut(s)	565
Hpy188III	TCNNGA	4 cut(s)	323, 386, 412, 705
Hpy8I	GTNNAC	3 cut(s)	16, 442, 680
HpyAV	CCTTC	4 cut(s)	66, 79, 113, 480
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	2 cut(s)	416, 465
HpyCH4V	TGCA	2 cut(s)	147, 579
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 308, 487, 602, 611
HpyF3I	CTNAG	4 cut(s)	120, 132, 393, 500
HpySE526I	ACGT	2 cut(s)	416, 465
Hsp92II	CATG	3 cut(s)	110, 583, 589
HspAI	GCGC	2 cut(s)	206, 240
Ksp22I	TGATCA	2 cut(s)	139, 313
Kzo9I	GATC	5 cut(s)	139, 313, 334, 565, 588
LmnI	GCTCC	2 cut(s)	501, 611
Lsp1109I	GCAGC	3 cut(s)	392, 563, 683
LweI	GCATC	2 cut(s)	271, 580
MaeI	CTAG	3 cut(s)	273, 521, 668
MaeII	ACGT	2 cut(s)	416, 465
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	5 cut(s)	141, 315, 336, 567, 590
MboI	GATC	5 cut(s)	139, 313, 334, 565, 588
MboII	GAAGA	5 cut(s)	88, 90, 91, 502, 620
MhlI	GDGCHC	2 cut(s)	192, 498
MluCI	AATT	1 cut(s)	227
MslI	CAYNNNNRTG	2 cut(s)	468, 584
MspA1I	CMGCKG	2 cut(s)	405, 635
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	5 cut(s)	121, 308, 487, 602, 611
NdeI	CATATG	1 cut(s)	446
NdeII	GATC	5 cut(s)	139, 313, 334, 565, 588
NlaIII	CATG	3 cut(s)	110, 583, 589
NlaIV	GGNNCC	1 cut(s)	497
NspI	RCATGY	1 cut(s)	583
OliI	CACNNNNGTG	1 cut(s)	468
PaeR7I	CTCGAG	1 cut(s)	185
PaqCI	CACCTGC	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	4 cut(s)	407, 452, 578, 673
Psp6I	CCWGG	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	497
PspPI	GGNCC	1 cut(s)	31
PspXI	VCTCGAGB	1 cut(s)	185
PvuII	CAGCTG	2 cut(s)	405, 635
RsaI	GTAC	2 cut(s)	505, 584
RsaNI	GTAC	2 cut(s)	504, 583
RseI	CAYNNNNRTG	2 cut(s)	468, 584
SatI	GCNGC	4 cut(s)	406, 451, 577, 672
Sau3AI	GATC	5 cut(s)	139, 313, 334, 565, 588
Sau96I	GGNCC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	2 cut(s)	192, 498
SfaNI	GCATC	2 cut(s)	271, 580
Sfr274I	CTCGAG	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	185
SmiMI	CAYNNNNRTG	2 cut(s)	468, 584
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	3 cut(s)	232, 360, 450
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	3 cut(s)	273, 521, 668
StyD4I	CCNGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	2 cut(s)	419, 468
TaqI	TCGA	4 cut(s)	25, 186, 260, 337
TasI	AATT	1 cut(s)	227
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	389
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	3 cut(s)	405, 576, 671
TspDTI	ATGAA	3 cut(s)	95, 98, 690
TspRI	CASTG	1 cut(s)	171
XceI	RCATGY	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	185
XspI	CTAG	3 cut(s)	273, 521, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.