Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006234

Physical Location & Seq

Genomic Coordinates Reverse (-)

59276805 .. 59277522

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCTGAACGAGAGGCAGGAGCAGAAGGTTCTGATGGGGTTTTGTGGGAAAACCAGTCATGGGTTAATTTGTCCAATTCTACTGACAATTTTTTGTTGAACTCCAATTCCGAGAATTCAGCTGGTGGTGGCGATGAGGGGGAGGATAAATTAGGGGAGAAGGAGAAAGAAATGATGGAGAGAGAAGATCGGGTGCAACCAGAAGTAAAGCCGGTGGCTGCTCCGGGTAAGAAGACTCTGGTTAAGAAGCGAGTTGGTCGAGGTGGTGTCAGCGGCGTCAAGAAGAATAACGGGAAGGCCACCAAGGGAAAGGGGAAAGAGAGTGGTGATGAGGTGGTGGAAGAAGGAAAAGGAGGGGGCGGTGATTCTGAGGATGATCATGAGCTGCATATATACACTGAGAGAGAAAGGAGGAAAAAGATGAGGAACATGTTTGCCAACCTTCATGCTTTGCTTCCTCAACTTCCTTCTAAGGTAAATGAAGCTATGTTAGCCTTTTCTTTTGCTTACAATGGGGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

174

Amino Acids

18.97

Weight (kDa)

5.41

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49770
fragaria_vesca	FvH4_2g05810
malus_domestica	MD05G1083300.v1.1 MD15G1079900.v1.1
prunus_persica	Prupe.1G432900_v2.0.a1 Prupe.8G127700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257881 RchiOBHm_Chr6g0308241
rosa_laevigata	RLG00000010655 RLG00000014735
rosa_multiflora	Rmu_co8385913.1_g000001 Rmu_sc0000077.1_g000033
rosa_roxburghii	Rroxscaffold_7G00209030
rosa_rugosa	Rorug05G0567100 Rorug06G0365300 Rorug06G0365300 Rorug06G0365400
rosa_samantha	Rh6AG084200 Rh6AG474300 Rh6BG078800 Rh6BG485000 Rh6CG073500 Rh6CG490000 Rh6DG070400 Rh6DG476400
rosa_wichuraiana	Rw6G007590 Rw6G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	273, 360
AcsI	RAATTY	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	1 cut(s)	100
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	3 cut(s)	122, 385, 485
AluI	AGCT	3 cut(s)	122, 385, 485
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	218, 385
ApoI	RAATTY	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	2 cut(s)	338, 374
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	205, 372
BccI	CCATC	2 cut(s)	29, 169
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	225
BisI	GCNGC	3 cut(s)	219, 274, 386
BlsI	GCNGC	3 cut(s)	220, 275, 387
Bme1390I	CCNGG	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	360, 390
BseNI	ACTGG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	205, 372
BshFI	GGCC	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	212, 224
BslI	CCNNNNNNNGG	1 cut(s)	61
BsnI	GGCC	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	187, 376
BspACI	CCGC	2 cut(s)	273, 360
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	361, 391
BspHI	TCATGA	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	187, 376
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	369, 399, 471
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	2 cut(s)	190, 379
BstMBI	GATC	2 cut(s)	187, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	205, 372
BstV2I	GAAGAC	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	299
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	396
CciI	TCATGA	1 cut(s)	379
Cfr10I	RCCGGY	1 cut(s)	211
CseI	GACGC	1 cut(s)	265
CviAII	CATG	4 cut(s)	60, 380, 430, 446
CviJI	RGCY	7 cut(s)	122, 211, 218, 299, 385, 485, 494
CviKI_1	RGCY	7 cut(s)	122, 211, 218, 299, 385, 485, 494
DdeI	CTNAG	3 cut(s)	369, 399, 471
DpnI	GATC	2 cut(s)	189, 378
DpnII	GATC	2 cut(s)	187, 376
Eco130I	CCWWGG	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	4 cut(s)	63, 383, 433, 449
FaiI	YATR	9 cut(s)	61, 381, 390, 392, 394, 431, 447, 488, 523
FatI	CATG	4 cut(s)	59, 379, 429, 445
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	3 cut(s)	219, 274, 386
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	3 cut(s)	219, 274, 386
GluI	GCNGC	3 cut(s)	219, 274, 386
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	2 cut(s)	212, 224
HgaI	GACGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	63, 383, 433, 449
HinfI	GANTC	2 cut(s)	235, 365
HpaII	CCGG	2 cut(s)	212, 224
HphI	GGTGA	2 cut(s)	338, 374
Hpy188I	TCNGA	4 cut(s)	7, 34, 112, 370
Hpy188III	TCNNGA	2 cut(s)	280, 380
HpyAV	CCTTC	6 cut(s)	20, 154, 289, 338, 452, 477
HpyCH4V	TGCA	2 cut(s)	196, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	3 cut(s)	369, 399, 471
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	63, 383, 433, 449
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	187, 376
LmnI	GCTCC	2 cut(s)	20, 226
LpnPI	CCDG	7 cut(s)	3, 68, 108, 213, 224, 225, 237
Lsp1109I	GCAGC	2 cut(s)	205, 372
MalI	GATC	2 cut(s)	189, 378
MboI	GATC	2 cut(s)	187, 376
MboII	GAAGA	4 cut(s)	197, 244, 295, 353
MluCI	AATT	6 cut(s)	67, 76, 88, 106, 115, 149
MlyI	GAGTC	1 cut(s)	229
MseI	TTAA	2 cut(s)	66, 243
MspA1I	CMGCKG	2 cut(s)	122, 273
MspI	CCGG	2 cut(s)	212, 224
MspR9I	CCNGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	2 cut(s)	187, 376
NlaIII	CATG	4 cut(s)	63, 383, 433, 449
NspI	RCATGY	1 cut(s)	433
PagI	TCATGA	1 cut(s)	379
PciI	ACATGT	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	220, 275, 387
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PscI	ACATGT	1 cut(s)	429
PvuII	CAGCTG	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	66, 243
SatI	GCNGC	3 cut(s)	219, 274, 386
Sau3AI	GATC	2 cut(s)	187, 376
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	9 cut(s)	31, 124, 265, 336, 387, 444, 477, 487, 522
Sse9I	AATT	6 cut(s)	67, 76, 88, 106, 115, 149
SsiI	CCGC	2 cut(s)	273, 360
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	303
TaqI	TCGA	1 cut(s)	259
TasI	AATT	6 cut(s)	67, 76, 88, 106, 115, 149
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	66, 243
Tru9I	TTAA	2 cut(s)	66, 243
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	2 cut(s)	218, 385
TspDTI	ATGAA	2 cut(s)	434, 495
TspRI	CASTG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	115
XceI	RCATGY	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.