Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006234

Physical Location & Seq

Genomic Coordinates Reverse (-)

68982618 .. 68992391

Gene Structure 9774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG485000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCCTTGCTTCCTCAGCTTCCAGCTAAGGCTGATCATTGTACCATTGTTGATGACTGATGAGGCAGTGAGATATATCAAATCCCTCGAGCACACTCTACAAACAGCGCAAAATAAGCAAAGGCTTGCTAAATTGCGGAGTAGCGCTTCTTCATCCATTATTACATCGAAAACAGAAGCTAGGAGTGATGCTGGTGTTACAAGAAAAGCGTTTTTAGCTGATCATTTTCAGGAGGAGGAGGAGGATCGACCATCAAAGAAGTTGGCTTACGGAAACAATCCATCACCTACTTCTCTTGATTCTCAGCAGGCCAGCAGCTTCAAGACGTGGTTTTCCCCTAATATTGTGGTGAACATATGCGGCAATGAGGCTCACCATCGTTGCATGTACATGATCCACGCTCATTATGCTGGTGGAGCTTGTGATGATACTCTTCCAGCTGGGGCGTTATCAGTAGAGGACACTTTCAATCTAGCAGCAGGTGAACTGAACCTGTGCCTCTTTTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

170

Amino Acids

18.76

Weight (kDa)

6.29

Isoelectric Point (pI)

63.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49770
fragaria_vesca	FvH4_2g05810
malus_domestica	MD05G1083300.v1.1 MD15G1079900.v1.1
prunus_persica	Prupe.1G432900_v2.0.a1 Prupe.8G127700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257881 RchiOBHm_Chr6g0308241
rosa_laevigata	RLG00000010655 RLG00000014735
rosa_multiflora	Rmu_co8385913.1_g000001 Rmu_sc0000077.1_g000033
rosa_roxburghii	Rroxscaffold_7G00209030
rosa_rugosa	Rorug05G0567100 Rorug06G0365300 Rorug06G0365300 Rorug06G0365400
rosa_samantha	Rh6AG084200 Rh6AG474300 Rh6BG078800 Rh6BG485000 Rh6CG073500 Rh6CG490000 Rh6DG070400 Rh6DG476400
rosa_wichuraiana	Rw6G007590 Rw6G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	470
Acc36I	ACCTGC	1 cut(s)	470
AciI	CCGC	2 cut(s)	136, 360
AclWI	GGATC	2 cut(s)	252, 388
AfaI	GTAC	2 cut(s)	42, 389
AfeI	AGCGCT	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	322, 469
AjiI	CACGTC	1 cut(s)	327
AluBI	AGCT	7 cut(s)	18, 25, 179, 218, 318, 419, 440
AluI	AGCT	7 cut(s)	18, 25, 179, 218, 318, 419, 440
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	252, 388
Ama87I	CYCGRG	1 cut(s)	86
Aor51HI	AGCGCT	1 cut(s)	145
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	2 cut(s)	315, 476
AspLEI	GCGC	2 cut(s)	109, 146
AsuHPI	GGTGA	4 cut(s)	276, 361, 365, 494
AvaI	CYCGRG	1 cut(s)	86
BarI	GAAGNNNNNNTAC	4 cut(s)	133, 165, 251, 283
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	327, 488
BccI	CCATC	3 cut(s)	259, 289, 384
BclI	TGATCA	2 cut(s)	33, 220
BfaI	CTAG	2 cut(s)	180, 473
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	470
BisI	GCNGC	3 cut(s)	316, 361, 477
BlsI	GCNGC	3 cut(s)	317, 362, 478
BmeT110I	CYCGRG	1 cut(s)	86
BmgBI	CACGTC	1 cut(s)	327
BmsI	GCATC	1 cut(s)	178
Bpu10I	CCTNAGC	2 cut(s)	14, 26
Bse3DI	GCAATG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	152
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	2 cut(s)	28, 317
BseRI	GAGGAG	3 cut(s)	248, 251, 254
BseXI	GCAGC	2 cut(s)	327, 488
BseYI	CCCAGC	1 cut(s)	440
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	86
BsnI	GGCC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	4 cut(s)	33, 220, 244, 393
BspACI	CCGC	2 cut(s)	136, 360
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	27, 316
BspMI	ACCTGC	1 cut(s)	470
BspPI	GGATC	2 cut(s)	252, 388
BsrDI	GCAATG	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	387
BssMI	GATC	4 cut(s)	33, 220, 244, 393
Bst6I	CTCTTC	1 cut(s)	438
BstAUI	TGTACA	1 cut(s)	387
BstC8I	GCNNGC	3 cut(s)	126, 309, 313
BstDEI	CTNAG	3 cut(s)	14, 26, 303
BstF5I	GGATG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	109, 146
BstKTI	GATC	4 cut(s)	36, 223, 247, 396
BstMBI	GATC	4 cut(s)	33, 220, 244, 393
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 115, 215, 407, 416
BstNSI	RCATGY	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	327, 488
BsuRI	GGCC	1 cut(s)	311
BtrI	CACGTC	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	152
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	470
Cac8I	GCNNGC	3 cut(s)	126, 309, 313
CfoI	GCGC	2 cut(s)	109, 146
Csp6I	GTAC	2 cut(s)	41, 388
CviAII	CATG	2 cut(s)	385, 391
CviQI	GTAC	2 cut(s)	41, 388
DdeI	CTNAG	3 cut(s)	14, 26, 303
DpnI	GATC	4 cut(s)	35, 222, 246, 395
DpnII	GATC	4 cut(s)	33, 220, 244, 393
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco47III	AGCGCT	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	86
FaeI	CATG	2 cut(s)	388, 394
FaiI	YATR	6 cut(s)	75, 356, 358, 386, 392, 408
FatI	CATG	2 cut(s)	384, 390
FauNDI	CATATG	1 cut(s)	356
FbaI	TGATCA	2 cut(s)	33, 220
Fnu4HI	GCNGC	3 cut(s)	316, 361, 477
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	3 cut(s)	316, 361, 477
FspBI	CTAG	2 cut(s)	180, 473
GlaI	GCGC	2 cut(s)	108, 145
GluI	GCNGC	3 cut(s)	316, 361, 477
GsaI	CCCAGC	1 cut(s)	444
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	311
HhaI	GCGC	2 cut(s)	109, 146
Hin1II	CATG	2 cut(s)	388, 394
Hin6I	GCGC	2 cut(s)	107, 144
HinP1I	GCGC	2 cut(s)	107, 144
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	4 cut(s)	276, 361, 365, 494
Hpy166II	GTNNAC	2 cut(s)	352, 485
Hpy188III	TCNNGA	4 cut(s)	230, 296, 322, 510
Hpy8I	GTNNAC	2 cut(s)	352, 485
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	1 cut(s)	384
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 115, 215, 407, 416
HpyF3I	CTNAG	3 cut(s)	14, 26, 303
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	2 cut(s)	388, 394
HspAI	GCGC	2 cut(s)	107, 144
Ksp22I	TGATCA	2 cut(s)	33, 220
Kzo9I	GATC	4 cut(s)	33, 220, 244, 393
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	2 cut(s)	327, 488
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	180, 473
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	4 cut(s)	35, 222, 246, 395
MboI	GATC	4 cut(s)	33, 220, 244, 393
MboII	GAAGA	2 cut(s)	141, 425
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	440
MwoI	GCNNNNNNNGC	5 cut(s)	15, 115, 215, 407, 416
NdeI	CATATG	1 cut(s)	356
NdeII	GATC	4 cut(s)	33, 220, 244, 393
NlaIII	CATG	2 cut(s)	388, 394
NspI	RCATGY	1 cut(s)	388
PaeR7I	CTCGAG	1 cut(s)	86
PaqCI	CACCTGC	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	317, 362, 478
PspFI	CCCAGC	1 cut(s)	440
PspXI	VCTCGAGB	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	2 cut(s)	42, 389
RsaNI	GTAC	2 cut(s)	41, 388
RseI	CAYNNNNRTG	1 cut(s)	389
SatI	GCNGC	3 cut(s)	316, 361, 477
Sau3AI	GATC	4 cut(s)	33, 220, 244, 393
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	178
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	2 cut(s)	136, 360
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	180, 473
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	3 cut(s)	87, 167, 247
TasI	AATT	1 cut(s)	131
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	299
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	2 cut(s)	315, 476
TspDTI	ATGAA	2 cut(s)	141, 495
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	72
XceI	RCATGY	1 cut(s)	388
XhoI	CTCGAG	1 cut(s)	86
XspI	CTAG	2 cut(s)	180, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.