Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006234

Physical Location & Seq

Genomic Coordinates Reverse (-)

65754474 .. 65756422

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG490000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGAAAGAGGTGTACGAAAGTCGAAAGGGCCGAAAGGCTGGTGGTGGTGCGTGGGTTGAGAGAGAGCGAAGGAAGAAGATGAAGGATATGTTCTCTTCCCTTCATGCCTTGCTTCCTCAGCTTCCAGCTAAGGCTGATCATTGTACCATTGTTGATGAGGCAGTGAGATATATCAAATCCCTCGAGCACACTCTACAAACAGCGCAAAATAAGCAAAGGCTTGCTAAATTGCGGAGTAGCGCTTCTTCATCCATTATTACATCGAAAACAGAAGCTAGGAGTGATGCTGGTGTTACAAGAAAAGCGTTTTTAGCTGATCATTTTCAGGAGGAGGAGGAGGATCGACCATCAAAGAAGTTGGCTTACGGAAACAATCCATCACCTACTTCTCTTGATTCTCAGCAGGCCAGCTGCTTCAAGACGTGGTTTTCCCCTAATATTGTGGTGAACATATGCGGCAATGAGGCTCACGTAAGTGTTTGTTCGCCAAGAAGGCCAGGGCTCCTCAGTACCGTCTTCTACATACTAGAAAAGCATAAACTGGATGTTTTATCTGCTCACATTTCCTCGGATCAGCATCGTTGCATGTACATGATCCACGCTCATTATGTGAGTCTGCAGAATTTCTTGCTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

213

Amino Acids

24.09

Weight (kDa)

9.28

Isoelectric Point (pI)

65.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	15 - 71	1e-05	Transcription factor SAC51 bHLH domain
HLH	PF00010	20 - 63	1.3e-09	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	148 - 200	5.1e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49770
fragaria_vesca	FvH4_2g05810
malus_domestica	MD05G1083300.v1.1 MD15G1079900.v1.1
prunus_persica	Prupe.1G432900_v2.0.a1 Prupe.8G127700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257881 RchiOBHm_Chr6g0308241
rosa_laevigata	RLG00000010655 RLG00000014735
rosa_multiflora	Rmu_co8385913.1_g000001 Rmu_sc0000077.1_g000033
rosa_roxburghii	Rroxscaffold_7G00209030
rosa_rugosa	Rorug05G0567100 Rorug06G0365300 Rorug06G0365300 Rorug06G0365400
rosa_samantha	Rh6AG084200 Rh6AG474300 Rh6BG078800 Rh6BG485000 Rh6CG073500 Rh6CG490000 Rh6DG070400 Rh6DG476400
rosa_wichuraiana	Rw6G007590 Rw6G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	235, 459
AclWI	GGATC	3 cut(s)	351, 582, 592
AcsI	RAATTY	1 cut(s)	625
AfaI	GTAC	4 cut(s)	17, 148, 514, 593
AfeI	AGCGCT	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	421
AjiI	CACGTC	1 cut(s)	426
AjnI	CCWGG	1 cut(s)	499
AleI	CACNNNNGTG	1 cut(s)	477
AluBI	AGCT	5 cut(s)	124, 131, 278, 317, 414
AluI	AGCT	5 cut(s)	124, 131, 278, 317, 414
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	351, 582, 592
Ama87I	CYCGRG	1 cut(s)	185
Aor51HI	AGCGCT	1 cut(s)	244
AoxI	GGCC	3 cut(s)	31, 408, 497
ApeKI	GCWGC	1 cut(s)	414
ApoI	RAATTY	1 cut(s)	625
AspLEI	GCGC	2 cut(s)	208, 245
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	375, 460
AvaI	CYCGRG	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	507
BarI	GAAGNNNNNNTAC	4 cut(s)	232, 264, 350, 382
BbsI	GAAGAC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	2 cut(s)	358, 388
BciT130I	CCWGG	1 cut(s)	501
BclI	TGATCA	2 cut(s)	139, 319
BfaI	CTAG	2 cut(s)	279, 530
BfmI	CTRYAG	1 cut(s)	620
BfoI	RGCGCY	1 cut(s)	246
BglI	GCCNNNNNGGC	1 cut(s)	496
BisI	GCNGC	2 cut(s)	415, 460
BlsI	GCNGC	2 cut(s)	416, 461
Bme1390I	CCNGG	1 cut(s)	501
BmeT110I	CYCGRG	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	426
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	506
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	2 cut(s)	277, 589
BpiI	GAAGAC	1 cut(s)	511
Bpu10I	CCTNAGC	2 cut(s)	120, 132
BsaAI	YACGTR	1 cut(s)	475
BsaBI	GATNNNNATC	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	500, 570
Bse1I	ACTGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	469
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	500, 570
BseGI	GGATG	2 cut(s)	251, 553
BseJI	GATNNNNATC	1 cut(s)	579
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	3 cut(s)	134, 416, 523
BseNI	ACTGG	1 cut(s)	549
BseRI	GAGGAG	4 cut(s)	347, 350, 353, 497
BseXI	GCAGC	1 cut(s)	401
BshFI	GGCC	3 cut(s)	33, 410, 499
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	185
BsnI	GGCC	3 cut(s)	33, 410, 499
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	192, 507
Bsp1407I	TGTACA	1 cut(s)	591
Bsp143I	GATC	5 cut(s)	139, 319, 343, 574, 597
BspACI	CCGC	2 cut(s)	235, 459
BspANI	GGCC	3 cut(s)	33, 410, 499
BspCNI	CTCAG	3 cut(s)	133, 415, 522
BspLI	GGNNCC	1 cut(s)	506
BspMAI	CTGCAG	1 cut(s)	624
BspPI	GGATC	3 cut(s)	351, 582, 592
BsrDI	GCAATG	1 cut(s)	469
BsrGI	TGTACA	1 cut(s)	591
BsrI	ACTGG	1 cut(s)	549
BssECI	CCNNGG	2 cut(s)	500, 570
BssMI	GATC	5 cut(s)	139, 319, 343, 574, 597
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	591
BstBAI	YACGTR	1 cut(s)	475
BstC8I	GCNNGC	3 cut(s)	225, 408, 412
BstDEI	CTNAG	4 cut(s)	120, 132, 402, 509
BstF5I	GGATG	2 cut(s)	251, 553
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	2 cut(s)	208, 245
BstKTI	GATC	5 cut(s)	142, 322, 346, 577, 600
BstMBI	GATC	5 cut(s)	139, 319, 343, 574, 597
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 214, 314, 496
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	620
BstV1I	GCAGC	1 cut(s)	401
BstV2I	GAAGAC	1 cut(s)	511
BsuRI	GGCC	3 cut(s)	33, 410, 499
BtrI	CACGTC	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	251, 553
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	225, 408, 412
CfoI	GCGC	2 cut(s)	208, 245
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	4 cut(s)	16, 147, 513, 592
CviAII	CATG	3 cut(s)	107, 589, 595
CviQI	GTAC	4 cut(s)	16, 147, 513, 592
DdeI	CTNAG	4 cut(s)	120, 132, 402, 509
DpnI	GATC	5 cut(s)	141, 321, 345, 576, 599
DpnII	GATC	5 cut(s)	139, 319, 343, 574, 597
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	507
Eco47III	AGCGCT	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	507
FaeI	CATG	3 cut(s)	110, 592, 598
FatI	CATG	3 cut(s)	106, 588, 594
FauNDI	CATATG	1 cut(s)	455
FbaI	TGATCA	2 cut(s)	139, 319
Fnu4HI	GCNGC	2 cut(s)	415, 460
FokI	GGATG	2 cut(s)	238, 560
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	2 cut(s)	415, 460
FspBI	CTAG	2 cut(s)	279, 530
GlaI	GCGC	2 cut(s)	207, 244
GluI	GCNGC	2 cut(s)	415, 460
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	33, 410, 499
HhaI	GCGC	2 cut(s)	208, 245
Hin1II	CATG	3 cut(s)	110, 592, 598
Hin6I	GCGC	2 cut(s)	206, 243
HinP1I	GCGC	2 cut(s)	206, 243
HinfI	GANTC	2 cut(s)	398, 616
HphI	GGTGA	2 cut(s)	375, 460
Hpy166II	GTNNAC	2 cut(s)	16, 451
Hpy188I	TCNGA	1 cut(s)	574
Hpy188III	TCNNGA	3 cut(s)	329, 395, 421
Hpy8I	GTNNAC	2 cut(s)	16, 451
HpyAV	CCTTC	4 cut(s)	66, 79, 113, 489
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	2 cut(s)	425, 474
HpyCH4V	TGCA	2 cut(s)	588, 622
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 214, 314, 496
HpyF3I	CTNAG	4 cut(s)	120, 132, 402, 509
HpySE526I	ACGT	2 cut(s)	425, 474
Hsp92II	CATG	3 cut(s)	110, 592, 598
HspAI	GCGC	2 cut(s)	206, 243
Ksp22I	TGATCA	2 cut(s)	139, 319
Kzo9I	GATC	5 cut(s)	139, 319, 343, 574, 597
LmnI	GCTCC	1 cut(s)	510
LpnPI	CCDG	9 cut(s)	27, 141, 276, 314, 392, 424, 486, 513, 530
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	2 cut(s)	277, 589
MaeI	CTAG	2 cut(s)	279, 530
MaeII	ACGT	2 cut(s)	425, 474
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	5 cut(s)	141, 321, 345, 576, 599
MboI	GATC	5 cut(s)	139, 319, 343, 574, 597
MboII	GAAGA	5 cut(s)	88, 90, 91, 240, 511
MhlI	GDGCHC	2 cut(s)	192, 507
MluCI	AATT	3 cut(s)	230, 625, 637
MlyI	GAGTC	1 cut(s)	625
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	2 cut(s)	477, 593
MspA1I	CMGCKG	1 cut(s)	414
MspR9I	CCNGG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	4 cut(s)	121, 214, 314, 496
NdeI	CATATG	1 cut(s)	455
NdeII	GATC	5 cut(s)	139, 319, 343, 574, 597
NlaIII	CATG	3 cut(s)	110, 592, 598
NlaIV	GGNNCC	1 cut(s)	506
NspI	RCATGY	1 cut(s)	592
OliI	CACNNNNGTG	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	416, 461
PleI	GAGTC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	624
Ppu21I	YACGTR	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	506
PspPI	GGNCC	1 cut(s)	31
PspXI	VCTCGAGB	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	624
PvuII	CAGCTG	1 cut(s)	414
RsaI	GTAC	4 cut(s)	17, 148, 514, 593
RsaNI	GTAC	4 cut(s)	16, 147, 513, 592
RseI	CAYNNNNRTG	2 cut(s)	477, 593
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	2 cut(s)	415, 460
Sau3AI	GATC	5 cut(s)	139, 319, 343, 574, 597
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	192, 507
SetI	ASST	9 cut(s)	15, 126, 133, 280, 319, 388, 416, 428, 477
SfaNI	GCATC	2 cut(s)	277, 589
SfcI	CTRYAG	1 cut(s)	620
Sfr274I	CTCGAG	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	185
SmiMI	CAYNNNNRTG	2 cut(s)	477, 593
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	3 cut(s)	230, 625, 637
SsiI	CCGC	2 cut(s)	235, 459
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	2 cut(s)	279, 530
StyD4I	CCNGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	2 cut(s)	428, 477
TaqI	TCGA	4 cut(s)	25, 186, 266, 346
TasI	AATT	3 cut(s)	230, 625, 637
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	1 cut(s)	414
TspDTI	ATGAA	3 cut(s)	95, 98, 240
TspGWI	ACGGA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	625
XceI	RCATGY	1 cut(s)	592
XhoI	CTCGAG	1 cut(s)	185
XspI	CTAG	2 cut(s)	279, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.