Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006234

Physical Location & Seq

Genomic Coordinates Reverse (-)

65085181 .. 65086459

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G041370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAGAAAGAGGTGAACGAGAGTCGAAAGGGCCGAAAGGCTGGTGGTAGTGCGTGGGTTGAGAGAGAGCGAAGGAAGAAGATGAAGGATACGTTCTCTTCCCTTCATGCCTTGCTTCCTCAGCTTCCTTCTAAGGCTGATCATTGCACCATTGTTGATGAGGCAGTGAGATATATCAAATCCCTCGAGCACACCCTACAAACAGCGCAAAAGCAAAGGCTTGCTAAATTGCGGAGTAGCGCTTCTTCATCCATTACATCGAAAACAGAAGCTAGGAGTGATGCTGGTGTTACAAGAAAGGCGTTTTTAGCTGATCATTTTCAGGAGGAGGATCGACCATCAAAGAAGTTGGCTTACGGAAACAATCCATCACCTACTTCTCTTGATTCTCAGCAGGCCAGCTGCTTCAAGACGTGGTTTTCCCCTAATATTGTGGTGAACATATGCGGCAATGAGGCTCACGTAAGTGTTTGTTCGCCAAGAAGGCCAGGGCTCCTCAGTACCGTCTTCTACATACTAGAAAAGCATAAACTGGATGTTATATCTGCTCACATTTCCTCGGATCAGCATCGTTGCATGTACATGATCCACGCTCATTATGCTTGTGGAGCTTGTGATGATACTCTTCCAGCTGGGGCGTTATCAGTAGAGGAAACTTTCAATCTAGCAGCAAGTGAACTGAACCTGTGCCTCTTTTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

234

Amino Acids

25.96

Weight (kDa)

8.75

Isoelectric Point (pI)

66.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	20 - 63	5.2e-09	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	144 - 196	3e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49770
fragaria_vesca	FvH4_2g05810
malus_domestica	MD05G1083300.v1.1 MD15G1079900.v1.1
prunus_persica	Prupe.1G432900_v2.0.a1 Prupe.8G127700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257881 RchiOBHm_Chr6g0308241
rosa_laevigata	RLG00000010655 RLG00000014735
rosa_multiflora	Rmu_co8385913.1_g000001 Rmu_sc0000077.1_g000033
rosa_roxburghii	Rroxscaffold_7G00209030
rosa_rugosa	Rorug05G0567100 Rorug06G0365300 Rorug06G0365300 Rorug06G0365400
rosa_samantha	Rh6AG084200 Rh6AG474300 Rh6BG078800 Rh6BG485000 Rh6CG073500 Rh6CG490000 Rh6DG070400 Rh6DG476400
rosa_wichuraiana	Rw6G007590 Rw6G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	232, 447
AclWI	GGATC	3 cut(s)	339, 570, 580
AfaI	GTAC	2 cut(s)	502, 581
AfeI	AGCGCT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	409, 661
AjiI	CACGTC	1 cut(s)	414
AjnI	CCWGG	1 cut(s)	487
AleI	CACNNNNGTG	1 cut(s)	465
AluBI	AGCT	6 cut(s)	124, 272, 311, 402, 611, 632
AluI	AGCT	6 cut(s)	124, 272, 311, 402, 611, 632
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	339, 570, 580
Ama87I	CYCGRG	1 cut(s)	185
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	3 cut(s)	31, 396, 485
ApeKI	GCWGC	2 cut(s)	402, 668
AspLEI	GCGC	2 cut(s)	208, 242
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	3 cut(s)	25, 363, 448
AvaI	CYCGRG	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	495
BarI	GAAGNNNNNNTAC	4 cut(s)	229, 261, 338, 370
BbsI	GAAGAC	1 cut(s)	499
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	389, 680
BccI	CCATC	2 cut(s)	346, 376
BciT130I	CCWGG	1 cut(s)	489
BciVI	GTATCC	1 cut(s)	82
BclI	TGATCA	2 cut(s)	139, 313
BfaI	CTAG	3 cut(s)	273, 518, 665
BfoI	RGCGCY	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	82
BglI	GCCNNNNNGGC	1 cut(s)	484
BisI	GCNGC	3 cut(s)	403, 448, 669
BlsI	GCNGC	3 cut(s)	404, 449, 670
Bme1390I	CCNGG	1 cut(s)	489
BmeT110I	CYCGRG	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	2 cut(s)	271, 577
BpiI	GAAGAC	1 cut(s)	499
Bpu10I	CCTNAGC	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	463
BsaBI	GATNNNNATC	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	488, 558
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	2 cut(s)	142, 457
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	488, 558
BseGI	GGATG	2 cut(s)	248, 541
BseJI	GATNNNNATC	1 cut(s)	567
BseMI	GCAATG	2 cut(s)	142, 457
BseMII	CTCAG	3 cut(s)	134, 404, 511
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	2 cut(s)	341, 485
BseXI	GCAGC	2 cut(s)	389, 680
BseYI	CCCAGC	1 cut(s)	632
BshFI	GGCC	3 cut(s)	33, 398, 487
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	185
BsnI	GGCC	3 cut(s)	33, 398, 487
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	192, 495
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	5 cut(s)	139, 313, 331, 562, 585
BspACI	CCGC	2 cut(s)	232, 447
BspANI	GGCC	3 cut(s)	33, 398, 487
BspCNI	CTCAG	3 cut(s)	133, 403, 510
BspLI	GGNNCC	1 cut(s)	494
BspPI	GGATC	3 cut(s)	339, 570, 580
BsrDI	GCAATG	2 cut(s)	142, 457
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	2 cut(s)	488, 558
BssMI	GATC	5 cut(s)	139, 313, 331, 562, 585
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	2 cut(s)	103, 630
BstAUI	TGTACA	1 cut(s)	579
BstBAI	YACGTR	1 cut(s)	463
BstC8I	GCNNGC	3 cut(s)	222, 396, 400
BstDEI	CTNAG	4 cut(s)	120, 132, 390, 497
BstF5I	GGATG	2 cut(s)	248, 541
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	2 cut(s)	208, 242
BstKTI	GATC	5 cut(s)	142, 316, 334, 565, 588
BstMBI	GATC	5 cut(s)	139, 313, 331, 562, 585
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 308, 484, 599, 608
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	487
BstV1I	GCAGC	2 cut(s)	389, 680
BstV2I	GAAGAC	1 cut(s)	499
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	33, 398, 487
BtrI	CACGTC	1 cut(s)	414
BtsCI	GGATG	2 cut(s)	248, 541
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	222, 396, 400
CfoI	GCGC	2 cut(s)	208, 242
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	501, 580
CviAII	CATG	3 cut(s)	107, 577, 583
CviQI	GTAC	2 cut(s)	501, 580
DdeI	CTNAG	4 cut(s)	120, 132, 390, 497
DpnI	GATC	5 cut(s)	141, 315, 333, 564, 587
DpnII	GATC	5 cut(s)	139, 313, 331, 562, 585
Eam1104I	CTCTTC	2 cut(s)	103, 630
EarI	CTCTTC	2 cut(s)	103, 630
Eco24I	GRGCYC	1 cut(s)	495
Eco47III	AGCGCT	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	495
FaeI	CATG	3 cut(s)	110, 580, 586
FatI	CATG	3 cut(s)	106, 576, 582
FauNDI	CATATG	1 cut(s)	443
FbaI	TGATCA	2 cut(s)	139, 313
Fnu4HI	GCNGC	3 cut(s)	403, 448, 669
FokI	GGATG	2 cut(s)	235, 548
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	3 cut(s)	403, 448, 669
FspBI	CTAG	3 cut(s)	273, 518, 665
GlaI	GCGC	2 cut(s)	207, 241
GluI	GCNGC	3 cut(s)	403, 448, 669
GsaI	CCCAGC	1 cut(s)	636
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	33, 398, 487
HhaI	GCGC	2 cut(s)	208, 242
Hin1II	CATG	3 cut(s)	110, 580, 586
Hin6I	GCGC	2 cut(s)	206, 240
HinP1I	GCGC	2 cut(s)	206, 240
HinfI	GANTC	2 cut(s)	22, 386
HphI	GGTGA	3 cut(s)	25, 363, 448
Hpy166II	GTNNAC	3 cut(s)	16, 439, 677
Hpy188I	TCNGA	1 cut(s)	562
Hpy188III	TCNNGA	4 cut(s)	323, 383, 409, 702
Hpy8I	GTNNAC	3 cut(s)	16, 439, 677
HpyAV	CCTTC	5 cut(s)	66, 79, 113, 138, 477
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	3 cut(s)	92, 413, 462
HpyCH4V	TGCA	2 cut(s)	147, 576
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 308, 484, 599, 608
HpyF3I	CTNAG	4 cut(s)	120, 132, 390, 497
HpySE526I	ACGT	3 cut(s)	92, 413, 462
Hsp92II	CATG	3 cut(s)	110, 580, 586
HspAI	GCGC	2 cut(s)	206, 240
Ksp22I	TGATCA	2 cut(s)	139, 313
Kzo9I	GATC	5 cut(s)	139, 313, 331, 562, 585
LmnI	GCTCC	2 cut(s)	498, 608
Lsp1109I	GCAGC	2 cut(s)	389, 680
LweI	GCATC	2 cut(s)	271, 577
MaeI	CTAG	3 cut(s)	273, 518, 665
MaeII	ACGT	3 cut(s)	92, 413, 462
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	5 cut(s)	141, 315, 333, 564, 587
MboI	GATC	5 cut(s)	139, 313, 331, 562, 585
MboII	GAAGA	6 cut(s)	88, 90, 91, 237, 499, 617
MhlI	GDGCHC	2 cut(s)	192, 495
MluCI	AATT	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	31
MslI	CAYNNNNRTG	2 cut(s)	465, 581
MspA1I	CMGCKG	2 cut(s)	402, 632
MspR9I	CCNGG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	5 cut(s)	121, 308, 484, 599, 608
NdeI	CATATG	1 cut(s)	443
NdeII	GATC	5 cut(s)	139, 313, 331, 562, 585
NlaIII	CATG	3 cut(s)	110, 580, 586
NlaIV	GGNNCC	1 cut(s)	494
NspI	RCATGY	1 cut(s)	580
OliI	CACNNNNGTG	1 cut(s)	465
PaeR7I	CTCGAG	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	3 cut(s)	404, 449, 670
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	494
PspPI	GGNCC	1 cut(s)	31
PspXI	VCTCGAGB	1 cut(s)	185
PvuII	CAGCTG	2 cut(s)	402, 632
RsaI	GTAC	2 cut(s)	502, 581
RsaNI	GTAC	2 cut(s)	501, 580
RseI	CAYNNNNRTG	2 cut(s)	465, 581
SatI	GCNGC	3 cut(s)	403, 448, 669
Sau3AI	GATC	5 cut(s)	139, 313, 331, 562, 585
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	2 cut(s)	192, 495
SfaNI	GCATC	2 cut(s)	271, 577
Sfr274I	CTCGAG	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	185
SmiMI	CAYNNNNRTG	2 cut(s)	465, 581
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	2 cut(s)	232, 447
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	3 cut(s)	273, 518, 665
StyD4I	CCNGG	1 cut(s)	487
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	3 cut(s)	95, 416, 465
TaqI	TCGA	4 cut(s)	25, 186, 260, 334
TasI	AATT	1 cut(s)	227
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	1 cut(s)	450
TfiI	GAWTC	1 cut(s)	386
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	2 cut(s)	402, 668
TspDTI	ATGAA	4 cut(s)	95, 98, 237, 687
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	171
XceI	RCATGY	1 cut(s)	580
XhoI	CTCGAG	1 cut(s)	185
XspI	CTAG	3 cut(s)	273, 518, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.