Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006234

Physical Location & Seq

Genomic Coordinates Forward (+)

3363610 .. 3364728

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010655

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGAAAGAGGTGAACGAAAGTCGAAAGGGCCGAAAGCCTGGTGGTGGTGCGTGGGTTGAGAGAGAACGAAGGAAGAAGATGAAGGATATGTTCTCTTCCCTTCATGCCTTGCTTCCTCAGCTTCCAGCTAAGGCTGATCATTGTACCATTGTTGATGAGGCAGTGAGATATATCAAATCCCTCGAGCACACTCTACAAACAGCTCAAAAGCAAAGGCTTGCTAAATTGCAGAGTAGCGCTTCTTCATCCATTACATCGAAAACAGAAGCTAGGAGTGATGCTGGTGTTACAAGAAAAGCGTTTTTAGCTGATCATTTTCAGGAGGAGGAGGATCGACCATCAAAGAAGTTGGCTTACGGAAACAATCCATCACCTACTTCTCTTGATTCTCAGCAGGCCAGCTGCCAATTCAAGACGTGGTTTTCCCCTAATATTGTGGTGAACATATGCGGCAATGAGGCTCACGTAAGTGTTTGTTCGCCAAGAAGGCCAGGGCTCCTCAGTACCGTCTTCTACATACTAGAAAAGCATAAACTGGAGGTTATATCTGCTCACATTTCCTCGGATCAGCATCGTTGCATGTACATGATCCACGCTCATTATGTGAGTCTGCAGAATTTCTTGCTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

212

Amino Acids

23.82

Weight (kDa)

9.3

Isoelectric Point (pI)

63.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	20 - 63	1.3e-09	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	146 - 198	7.3e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49770
fragaria_vesca	FvH4_2g05810
malus_domestica	MD05G1083300.v1.1 MD15G1079900.v1.1
prunus_persica	Prupe.1G432900_v2.0.a1 Prupe.8G127700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257881 RchiOBHm_Chr6g0308241
rosa_laevigata	RLG00000010655 RLG00000014735
rosa_multiflora	Rmu_co8385913.1_g000001 Rmu_sc0000077.1_g000033
rosa_roxburghii	Rroxscaffold_7G00209030
rosa_rugosa	Rorug05G0567100 Rorug06G0365300 Rorug06G0365300 Rorug06G0365400
rosa_samantha	Rh6AG084200 Rh6AG474300 Rh6BG078800 Rh6BG485000 Rh6CG073500 Rh6CG490000 Rh6DG070400 Rh6DG476400
rosa_wichuraiana	Rw6G007590 Rw6G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	453
AclWI	GGATC	3 cut(s)	342, 576, 586
AcsI	RAATTY	1 cut(s)	619
AfaI	GTAC	3 cut(s)	148, 508, 587
AfeI	AGCGCT	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	415
AjiI	CACGTC	1 cut(s)	420
AjnI	CCWGG	2 cut(s)	40, 493
AleI	CACNNNNGTG	1 cut(s)	471
AluBI	AGCT	6 cut(s)	124, 131, 206, 272, 311, 405
AluI	AGCT	6 cut(s)	124, 131, 206, 272, 311, 405
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	342, 576, 586
Ama87I	CYCGRG	1 cut(s)	185
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	3 cut(s)	31, 399, 491
ApeKI	GCWGC	1 cut(s)	405
ApoI	RAATTY	1 cut(s)	619
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	3 cut(s)	25, 366, 454
AvaI	CYCGRG	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	501
BarI	GAAGNNNNNNTAC	4 cut(s)	229, 261, 341, 373
BbsI	GAAGAC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	2 cut(s)	349, 379
BciT130I	CCWGG	2 cut(s)	42, 495
BclI	TGATCA	2 cut(s)	139, 313
BfaI	CTAG	2 cut(s)	273, 524
BfmI	CTRYAG	1 cut(s)	614
BfoI	RGCGCY	1 cut(s)	243
BglI	GCCNNNNNGGC	1 cut(s)	490
BisI	GCNGC	2 cut(s)	406, 454
BlsI	GCNGC	2 cut(s)	407, 455
Bme1390I	CCNGG	2 cut(s)	42, 495
BmeT110I	CYCGRG	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	420
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	500
BmrFI	CCNGG	2 cut(s)	42, 495
BmsI	GCATC	2 cut(s)	271, 583
BpiI	GAAGAC	1 cut(s)	505
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	2 cut(s)	120, 132
BsaAI	YACGTR	1 cut(s)	469
BsaBI	GATNNNNATC	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	494, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	573
BseBI	CCWGG	2 cut(s)	42, 495
BseDI	CCNNGG	2 cut(s)	494, 564
BseGI	GGATG	1 cut(s)	248
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	3 cut(s)	134, 407, 517
BseNI	ACTGG	1 cut(s)	543
BseRI	GAGGAG	3 cut(s)	341, 344, 491
BseXI	GCAGC	1 cut(s)	392
BshFI	GGCC	3 cut(s)	33, 401, 493
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	47
BsnI	GGCC	3 cut(s)	33, 401, 493
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	192, 501
Bsp1407I	TGTACA	1 cut(s)	585
Bsp143I	GATC	5 cut(s)	139, 313, 334, 568, 591
BspACI	CCGC	1 cut(s)	453
BspANI	GGCC	3 cut(s)	33, 401, 493
BspCNI	CTCAG	3 cut(s)	133, 406, 516
BspLI	GGNNCC	1 cut(s)	500
BspMAI	CTGCAG	1 cut(s)	618
BspPI	GGATC	3 cut(s)	342, 576, 586
BsrDI	GCAATG	1 cut(s)	463
BsrGI	TGTACA	1 cut(s)	585
BsrI	ACTGG	1 cut(s)	543
BssECI	CCNNGG	2 cut(s)	494, 564
BssMI	GATC	5 cut(s)	139, 313, 334, 568, 591
Bst2UI	CCWGG	2 cut(s)	42, 495
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	585
BstBAI	YACGTR	1 cut(s)	469
BstC8I	GCNNGC	3 cut(s)	222, 399, 403
BstDEI	CTNAG	4 cut(s)	120, 132, 393, 503
BstF5I	GGATG	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	5 cut(s)	142, 316, 337, 571, 594
BstMBI	GATC	5 cut(s)	139, 313, 334, 568, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 308, 490
BstNI	CCWGG	2 cut(s)	42, 495
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	2 cut(s)	40, 493
BstSFI	CTRYAG	1 cut(s)	614
BstV1I	GCAGC	1 cut(s)	392
BstV2I	GAAGAC	1 cut(s)	505
BsuRI	GGCC	3 cut(s)	33, 401, 493
BtrI	CACGTC	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	248
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	222, 399, 403
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	147, 507, 586
CviAII	CATG	3 cut(s)	107, 583, 589
CviQI	GTAC	3 cut(s)	147, 507, 586
DdeI	CTNAG	4 cut(s)	120, 132, 393, 503
DpnI	GATC	5 cut(s)	141, 315, 336, 570, 593
DpnII	GATC	5 cut(s)	139, 313, 334, 568, 591
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	501
Eco47III	AGCGCT	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	40, 493
EcoT38I	GRGCYC	1 cut(s)	501
FaeI	CATG	3 cut(s)	110, 586, 592
FatI	CATG	3 cut(s)	106, 582, 588
FauNDI	CATATG	1 cut(s)	449
FbaI	TGATCA	2 cut(s)	139, 313
Fnu4HI	GCNGC	2 cut(s)	406, 454
FokI	GGATG	1 cut(s)	235
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	2 cut(s)	406, 454
FspBI	CTAG	2 cut(s)	273, 524
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	2 cut(s)	406, 454
GsuI	CTGGAG	1 cut(s)	560
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	33, 401, 493
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	3 cut(s)	110, 586, 592
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HinfI	GANTC	2 cut(s)	389, 610
HphI	GGTGA	3 cut(s)	25, 366, 454
Hpy166II	GTNNAC	2 cut(s)	16, 445
Hpy188I	TCNGA	1 cut(s)	568
Hpy188III	TCNNGA	3 cut(s)	323, 386, 415
Hpy8I	GTNNAC	2 cut(s)	16, 445
HpyAV	CCTTC	4 cut(s)	66, 79, 113, 483
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4IV	ACGT	2 cut(s)	419, 468
HpyCH4V	TGCA	3 cut(s)	232, 582, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 308, 490
HpyF3I	CTNAG	4 cut(s)	120, 132, 393, 503
HpySE526I	ACGT	2 cut(s)	419, 468
Hsp92II	CATG	3 cut(s)	110, 586, 592
HspAI	GCGC	1 cut(s)	240
Ksp22I	TGATCA	2 cut(s)	139, 313
Kzo9I	GATC	5 cut(s)	139, 313, 334, 568, 591
LmnI	GCTCC	1 cut(s)	504
Lsp1109I	GCAGC	1 cut(s)	392
LweI	GCATC	2 cut(s)	271, 583
MaeI	CTAG	2 cut(s)	273, 524
MaeII	ACGT	2 cut(s)	419, 468
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	5 cut(s)	141, 315, 336, 570, 593
MboI	GATC	5 cut(s)	139, 313, 334, 568, 591
MboII	GAAGA	5 cut(s)	88, 90, 91, 237, 505
MhlI	GDGCHC	2 cut(s)	192, 501
MluCI	AATT	4 cut(s)	227, 410, 619, 631
MlyI	GAGTC	1 cut(s)	619
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	2 cut(s)	471, 587
MspA1I	CMGCKG	1 cut(s)	405
MspR9I	CCNGG	2 cut(s)	42, 495
MvaI	CCWGG	2 cut(s)	42, 495
MwoI	GCNNNNNNNGC	3 cut(s)	121, 308, 490
NdeI	CATATG	1 cut(s)	449
NdeII	GATC	5 cut(s)	139, 313, 334, 568, 591
NlaIII	CATG	3 cut(s)	110, 586, 592
NlaIV	GGNNCC	1 cut(s)	500
NspI	RCATGY	1 cut(s)	586
OliI	CACNNNNGTG	1 cut(s)	471
PaeR7I	CTCGAG	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	2 cut(s)	407, 455
PleI	GAGTC	1 cut(s)	618
PpsI	GAGTC	1 cut(s)	618
Ppu21I	YACGTR	1 cut(s)	469
Psp6I	CCWGG	2 cut(s)	40, 493
PspGI	CCWGG	2 cut(s)	40, 493
PspN4I	GGNNCC	1 cut(s)	500
PspPI	GGNCC	1 cut(s)	31
PspXI	VCTCGAGB	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	618
PvuII	CAGCTG	1 cut(s)	405
RsaI	GTAC	3 cut(s)	148, 508, 587
RsaNI	GTAC	3 cut(s)	147, 507, 586
RseI	CAYNNNNRTG	2 cut(s)	471, 587
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	2 cut(s)	406, 454
Sau3AI	GATC	5 cut(s)	139, 313, 334, 568, 591
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	2 cut(s)	42, 495
SduI	GDGCHC	2 cut(s)	192, 501
SfaNI	GCATC	2 cut(s)	271, 583
SfcI	CTRYAG	1 cut(s)	614
Sfr274I	CTCGAG	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	185
SmiMI	CAYNNNNRTG	2 cut(s)	471, 587
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	4 cut(s)	227, 410, 619, 631
SsiI	CCGC	1 cut(s)	453
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	2 cut(s)	273, 524
StyD4I	CCNGG	2 cut(s)	40, 493
TaaI	ACNGT	1 cut(s)	511
TaiI	ACGT	2 cut(s)	422, 471
TaqI	TCGA	4 cut(s)	25, 186, 260, 337
TasI	AATT	4 cut(s)	227, 410, 619, 631
TatI	WGTACW	1 cut(s)	585
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	1 cut(s)	405
TspDTI	ATGAA	3 cut(s)	95, 98, 237
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	619
XceI	RCATGY	1 cut(s)	586
XhoI	CTCGAG	1 cut(s)	185
XspI	CTAG	2 cut(s)	273, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.