Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006234

Physical Location & Seq

Genomic Coordinates Reverse (-)

17409860 .. 17410592

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1083300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGGTCGGGGAAGCAGGAGGGTTCACTGAGGGTCTGTTGTGGGAAAACCAGTCATGGGGCTAATTTGTATTTTAATTCTGACAACTCAGGTGGTGGTGGTGATGAAGAGAAAAATTTGGGGAAGGAGCAAGAGACAGCTGTGATGGAAATTAGTGCAGAAGGTCATAATCAGGAAAAGACAGTGCCGCCGCCACCTGCAGCGGGGAAGAAGCGGAAAGGAGGAGGAGGAGGTGTGGGCAAGAATGTGAAGGCGAAGGGGAAGGGGAGTACTAGAACTGGTGATAAGGGAAAAGGTGTTTCAGGGGGTAATGAGTCAGATGACCATGAGATGCATATATTGACAGAGAGAGAAAGGAGGAAGAAGATGAGGAACATGTTTGCTAACCTTCATACTTTGCTTCCTCAGCTTCCAGCTAAGGTAATACAATTAACCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

147

Amino Acids

15.42

Weight (kDa)

9.52

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49770
fragaria_vesca	FvH4_2g05810
malus_domestica	MD05G1083300.v1.1 MD15G1079900.v1.1
prunus_persica	Prupe.1G432900_v2.0.a1 Prupe.8G127700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257881 RchiOBHm_Chr6g0308241
rosa_laevigata	RLG00000010655 RLG00000014735
rosa_multiflora	Rmu_co8385913.1_g000001 Rmu_sc0000077.1_g000033
rosa_roxburghii	Rroxscaffold_7G00209030
rosa_rugosa	Rorug05G0567100 Rorug06G0365300 Rorug06G0365300 Rorug06G0365400
rosa_samantha	Rh6AG084200 Rh6AG474300 Rh6BG078800 Rh6BG485000 Rh6CG073500 Rh6CG490000 Rh6DG070400 Rh6DG476400
rosa_wichuraiana	Rw6G007590 Rw6G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	205
AciI	CCGC	4 cut(s)	188, 191, 203, 214
AcsI	RAATTY	1 cut(s)	115
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	2 cut(s)	57, 203
AflIII	ACRYGT	1 cut(s)	375
AluBI	AGCT	3 cut(s)	140, 409, 416
AluI	AGCT	3 cut(s)	140, 409, 416
Alw26I	GTCTC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	113, 293
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	3 cut(s)	188, 191, 201
BlsI	GCNGC	3 cut(s)	189, 192, 202
BmcAI	AGTACT	1 cut(s)	271
BmsI	GCATC	1 cut(s)	321
Bpu10I	CCTNAGC	2 cut(s)	405, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 203
Bse1I	ACTGG	2 cut(s)	51, 283
BseLI	CCNNNNNNNGG	2 cut(s)	57, 203
BseMII	CTCAG	3 cut(s)	20, 102, 419
BseNI	ACTGG	2 cut(s)	51, 283
BseRI	GAGGAG	3 cut(s)	237, 240, 243
BseXI	GCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	57, 203
BsmAI	GTCTC	1 cut(s)	128
BspACI	CCGC	4 cut(s)	188, 191, 203, 214
BspCNI	CTCAG	3 cut(s)	21, 101, 418
BspMAI	CTGCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	51, 283
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	102
BstDEI	CTNAG	4 cut(s)	29, 88, 405, 417
BstMAI	GTCTC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstNSI	RCATGY	1 cut(s)	379
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	26, 189
BveI	ACCTGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	270
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	3 cut(s)	56, 326, 376
CviJI	RGCY	4 cut(s)	62, 140, 409, 416
CviKI_1	RGCY	4 cut(s)	62, 140, 409, 416
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	4 cut(s)	29, 88, 405, 417
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	336
FaeI	CATG	3 cut(s)	59, 329, 379
FaiI	YATR	7 cut(s)	57, 168, 327, 336, 338, 377, 393
FatI	CATG	3 cut(s)	55, 325, 375
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	3 cut(s)	188, 191, 201
Fsp4HI	GCNGC	3 cut(s)	188, 191, 201
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	3 cut(s)	188, 191, 201
Hin1II	CATG	3 cut(s)	59, 329, 379
HinfI	GANTC	1 cut(s)	314
HphI	GGTGA	2 cut(s)	113, 293
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	82, 319
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	6 cut(s)	118, 155, 244, 250, 256, 398
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	3 cut(s)	158, 200, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
HpyF3I	CTNAG	4 cut(s)	29, 88, 405, 417
Hsp92II	CATG	3 cut(s)	59, 329, 379
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	8 cut(s)	2, 64, 75, 158, 210, 264, 288, 426
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	273
MboII	GAAGA	4 cut(s)	119, 220, 373, 376
MluCI	AATT	5 cut(s)	64, 76, 115, 150, 428
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	9 cut(s)	13, 24, 215, 218, 221, 224, 351, 363, 414
Mph1103I	ATGCAT	1 cut(s)	336
MseI	TTAA	3 cut(s)	75, 431, 439
MspA1I	CMGCKG	2 cut(s)	140, 203
MwoI	GCNNNNNNNGC	1 cut(s)	406
NlaIII	CATG	3 cut(s)	59, 329, 379
NsiI	ATGCAT	1 cut(s)	336
NspI	RCATGY	1 cut(s)	379
PaqCI	CACCTGC	1 cut(s)	205
PciI	ACATGT	1 cut(s)	375
PkrI	GCNGC	3 cut(s)	189, 192, 202
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PscI	ACATGT	1 cut(s)	375
PstI	CTGCAG	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SaqAI	TTAA	3 cut(s)	75, 431, 439
SatI	GCNGC	3 cut(s)	188, 191, 201
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	1 cut(s)	323
SfaNI	GCATC	1 cut(s)	321
SfcI	CTRYAG	1 cut(s)	198
Sse9I	AATT	5 cut(s)	64, 76, 115, 150, 428
SsiI	CCGC	4 cut(s)	188, 191, 203, 214
SspMI	CTAG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	5 cut(s)	64, 76, 115, 150, 428
TatI	WGTACW	1 cut(s)	269
TauI	GCSGC	2 cut(s)	190, 193
Tru1I	TTAA	3 cut(s)	75, 431, 439
Tru9I	TTAA	3 cut(s)	75, 431, 439
TscAI	CASTG	2 cut(s)	33, 189
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	120, 380
TspRI	CASTG	2 cut(s)	33, 189
XapI	RAATTY	1 cut(s)	115
XceI	RCATGY	1 cut(s)	379
XspI	CTAG	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	271
Zsp2I	ATGCAT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.