Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006234

Physical Location & Seq

Genomic Coordinates Reverse (-)

15166666 .. 15169132

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G127700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTCTGAAGGGGAAACAGGAGGATTCTCAGAAGGTTTTTTGTGGGAAAACCAGTCATGGGCTAATTTGTCAATTAATTCTGACAACTCAGGTGGTGCTGGTGATGAAGATAAAAATTTTGGGACCAAGGAGGAGACAGCTGTGATGGGAATTAGTACAGAAGGTCATAATCAGGTACCGCCTGCACCCGGTAAGAAGCGGAGGGGAGGAGGAGGTGTGGGGAAGAATGGGATAATCAAAGGAAGTACTAGTCCTGCTGACAAAGGAAAAGGTACAACTGGTGCACGTGATGGTGGTGGTGGTGGTGAGTCAGATGACCATGAGATGCATATTTGGACAGAGAGAGAAAGGAGGAAGAAGATGAGGAACATGTTTGCTAATCTTCATGCTTTGCTTCCTCAGCTTCCTCCTAAGGCTGACAAATCCACAATCGTAGATGAGGCAGTGAACTACATCAAAACCCTACAGCAGACTCTCCAGAAGCTACAAAAACAAAAGCTAGAGAGGCTCCAAGGTGCCACAACCATCAATTTCGATCCATCAATTCTCAACCCGCAAAATGTTGCCTTTGGCTCGAGAGAGGAATTCTTAGCTAATCATGGCTCTGCTGCTACAATCAACCCTTCGAATTCACTCTTAACATCGCATTGTGGTCCTGTGAACTTTCAAACATGGACTACACCCAATGTCGTTTTGAACATCTGCGGCGATGAAGCGCAAATTAGTGTGTGCTGTCCAAAGAAGGCTGGCCTCCTTTCCGCCATATGCTTCGTCTTGGAGAAGTATAAACTTGGTGTGATGTCGGCTCATGTTTCCTCCGACTGCAATCGCAGCATGTACATGATTCAAGCACATGCAAGAGGAGCTCCCGATCAGTTTCTGGATACATTTCCTGCAGATGAAATATTCAAGCAAGCTGCAGCAGAGATAATATTGATGCTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

316

Amino Acids

33.91

Weight (kDa)

6.26

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49770
fragaria_vesca	FvH4_2g05810
malus_domestica	MD05G1083300.v1.1 MD15G1079900.v1.1
prunus_persica	Prupe.1G432900_v2.0.a1 Prupe.8G127700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257881 RchiOBHm_Chr6g0308241
rosa_laevigata	RLG00000010655 RLG00000014735
rosa_multiflora	Rmu_co8385913.1_g000001 Rmu_sc0000077.1_g000033
rosa_roxburghii	Rroxscaffold_7G00209030
rosa_rugosa	Rorug05G0567100 Rorug06G0365300 Rorug06G0365300 Rorug06G0365400
rosa_samantha	Rh6AG084200 Rh6AG474300 Rh6BG078800 Rh6BG485000 Rh6CG073500 Rh6CG490000 Rh6DG070400 Rh6DG476400
rosa_wichuraiana	Rw6G007590 Rw6G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	175
AccB1I	GGYRCC	2 cut(s)	175, 515
AciI	CCGC	5 cut(s)	179, 199, 554, 705, 759
AclWI	GGATC	1 cut(s)	530
AcsI	RAATTY	3 cut(s)	115, 584, 628
AcuI	CTGAAG	1 cut(s)	27
AcvI	CACGTG	1 cut(s)	287
AfaI	GTAC	5 cut(s)	157, 177, 247, 274, 839
AfiI	CCNNNNNNNGG	2 cut(s)	58, 188
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	4 cut(s)	668, 697, 848, 910
AhlI	ACTAGT	1 cut(s)	248
AluBI	AGCT	7 cut(s)	140, 403, 484, 499, 593, 866, 917
AluI	AGCT	7 cut(s)	140, 403, 484, 499, 593, 866, 917
Alw21I	GWGCWC	2 cut(s)	286, 868
Alw26I	GTCTC	1 cut(s)	128
Alw44I	GTGCAC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	530
AlwNI	CAGNNNCTG	1 cut(s)	880
Ama87I	CYCGRG	1 cut(s)	574
AoxI	GGCC	1 cut(s)	748
ApaLI	GTGCAC	1 cut(s)	282
ApeKI	GCWGC	4 cut(s)	608, 831, 917, 920
ApoI	RAATTY	3 cut(s)	115, 584, 628
AseI	ATTAAT	1 cut(s)	75
Asp718I	GGTACC	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	718
AspS9I	GGNCC	2 cut(s)	123, 653
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	113, 317
AsuII	TTCGAA	1 cut(s)	626
AvaI	CYCGRG	1 cut(s)	574
AvaII	GGWCC	2 cut(s)	123, 653
AxyI	CCTNAGG	1 cut(s)	411
BaeGI	GKGCMC	1 cut(s)	286
BanI	GGYRCC	2 cut(s)	175, 515
BanII	GRGCYC	1 cut(s)	868
BbrPI	CACGTG	1 cut(s)	287
Bbv12I	GWGCWC	2 cut(s)	286, 868
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	4 cut(s)	595, 843, 904, 932
BccI	CCATC	4 cut(s)	139, 284, 533, 547
BciVI	GTATCC	1 cut(s)	877
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	128
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	2 cut(s)	249, 500
BfmI	CTRYAG	3 cut(s)	464, 894, 918
BfuI	GTATCC	1 cut(s)	877
BisI	GCNGC	5 cut(s)	609, 706, 832, 918, 921
BlsI	GCNGC	5 cut(s)	610, 707, 833, 919, 922
BmcAI	AGTACT	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	2 cut(s)	123, 653
BmeT110I	CYCGRG	1 cut(s)	574
BmgT120I	GGNCC	2 cut(s)	123, 653
BmiI	GGNNCC	4 cut(s)	124, 177, 509, 517
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	2 cut(s)	315, 927
BpmI	CTGGAG	1 cut(s)	461
Bpu10I	CCTNAGC	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	626
BpuMI	CCSGG	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	126, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 188
Bse1I	ACTGG	2 cut(s)	52, 283
Bse21I	CCTNAGG	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	126, 511
BseLI	CCNNNNNNNGG	2 cut(s)	58, 188
BseMII	CTCAG	3 cut(s)	42, 102, 413
BseNI	ACTGG	2 cut(s)	52, 283
BseRI	GAGGAG	4 cut(s)	146, 222, 225, 876
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	4 cut(s)	595, 843, 904, 932
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	750
BshNI	GGYRCC	2 cut(s)	175, 515
BsiHKAI	GWGCWC	2 cut(s)	286, 868
BsiHKCI	CYCGRG	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	58, 188
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	750
BsoBI	CYCGRG	1 cut(s)	574
Bsp119I	TTCGAA	1 cut(s)	626
Bsp1286I	GDGCHC	2 cut(s)	286, 868
Bsp1407I	TGTACA	1 cut(s)	837
Bsp143I	GATC	2 cut(s)	535, 871
BspACI	CCGC	5 cut(s)	179, 199, 554, 705, 759
BspANI	GGCC	1 cut(s)	750
BspCNI	CTCAG	3 cut(s)	41, 101, 412
BspLI	GGNNCC	4 cut(s)	124, 177, 509, 517
BspMAI	CTGCAG	2 cut(s)	898, 922
BspPI	GGATC	1 cut(s)	530
BspT104I	TTCGAA	1 cut(s)	626
BspT107I	GGYRCC	2 cut(s)	175, 515
BsrGI	TGTACA	1 cut(s)	837
BsrI	ACTGG	2 cut(s)	52, 283
BssECI	CCNNGG	2 cut(s)	126, 511
BssMI	GATC	2 cut(s)	535, 871
BssT1I	CCWWGG	2 cut(s)	126, 511
BstAUI	TGTACA	1 cut(s)	837
BstBAI	YACGTR	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	626
BstC8I	GCNNGC	3 cut(s)	183, 748, 915
BstDEI	CTNAG	5 cut(s)	28, 88, 399, 411, 589
BstHHI	GCGC	1 cut(s)	718
BstKTI	GATC	2 cut(s)	538, 874
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	535, 871
BstMWI	GCNNNNNNNGC	4 cut(s)	400, 505, 831, 863
BstNSI	RCATGY	3 cut(s)	373, 838, 857
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	3 cut(s)	464, 894, 918
BstSLI	GKGCMC	1 cut(s)	286
BstV1I	GCAGC	4 cut(s)	595, 843, 904, 932
Bsu36I	CCTNAGG	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	877
BsuRI	GGCC	1 cut(s)	750
BtgZI	GCGATG	2 cut(s)	627, 723
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	3 cut(s)	183, 748, 915
CaiI	CAGNNNCTG	1 cut(s)	880
CfoI	GCGC	1 cut(s)	718
Cfr13I	GGNCC	2 cut(s)	123, 653
Csp6I	GTAC	5 cut(s)	156, 176, 246, 273, 838
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviQI	GTAC	5 cut(s)	156, 176, 246, 273, 838
DdeI	CTNAG	5 cut(s)	28, 88, 399, 411, 589
DpnI	GATC	2 cut(s)	537, 873
DpnII	GATC	2 cut(s)	535, 871
EciI	GGCGGA	1 cut(s)	748
Ecl136II	GAGCTC	1 cut(s)	866
Eco130I	CCWWGG	2 cut(s)	126, 511
Eco24I	GRGCYC	1 cut(s)	868
Eco47I	GGWCC	2 cut(s)	123, 653
Eco53kI	GAGCTC	1 cut(s)	866
Eco57I	CTGAAG	1 cut(s)	27
Eco72I	CACGTG	1 cut(s)	287
Eco81I	CCTNAGG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	866
EcoRI	GAATTC	2 cut(s)	584, 628
EcoT14I	CCWWGG	2 cut(s)	126, 511
EcoT22I	ATGCAT	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	868
ErhI	CCWWGG	2 cut(s)	126, 511
FaqI	GGGAC	1 cut(s)	136
FauI	CCCGC	1 cut(s)	561
FauNDI	CATATG	1 cut(s)	764
Fnu4HI	GCNGC	5 cut(s)	609, 706, 832, 918, 921
FriOI	GRGCYC	1 cut(s)	868
Fsp4HI	GCNGC	5 cut(s)	609, 706, 832, 918, 921
FspBI	CTAG	2 cut(s)	249, 500
GlaI	GCGC	1 cut(s)	717
GluI	GCNGC	5 cut(s)	609, 706, 832, 918, 921
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	750
HapII	CCGG	1 cut(s)	189
HhaI	GCGC	1 cut(s)	718
Hin6I	GCGC	1 cut(s)	716
HinP1I	GCGC	1 cut(s)	716
HinfI	GANTC	4 cut(s)	24, 308, 472, 844
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	2 cut(s)	113, 317
Hpy166II	GTNNAC	3 cut(s)	284, 448, 661
Hpy188I	TCNGA	5 cut(s)	7, 31, 82, 313, 820
Hpy188III	TCNNGA	4 cut(s)	478, 576, 869, 881
Hpy8I	GTNNAC	3 cut(s)	284, 448, 661
HpyAV	CCTTC	4 cut(s)	26, 155, 633, 736
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	7 cut(s)	185, 284, 328, 825, 857, 896, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	400, 505, 831, 863
HpyF3I	CTNAG	5 cut(s)	28, 88, 399, 411, 589
HpySE526I	ACGT	1 cut(s)	286
HspAI	GCGC	1 cut(s)	716
KpnI	GGTACC	1 cut(s)	179
Kzo9I	GATC	2 cut(s)	535, 871
LmnI	GCTCC	3 cut(s)	513, 863, 871
Lsp1109I	GCAGC	4 cut(s)	595, 843, 904, 932
LweI	GCATC	2 cut(s)	315, 927
MaeI	CTAG	2 cut(s)	249, 500
MaeII	ACGT	1 cut(s)	286
MalI	GATC	2 cut(s)	537, 873
MboI	GATC	2 cut(s)	535, 871
MboII	GAAGA	5 cut(s)	119, 235, 367, 370, 374
MhlI	GDGCHC	2 cut(s)	286, 868
MlyI	GAGTC	2 cut(s)	317, 466
MmeI	TCCRAC	1 cut(s)	843
Mph1103I	ATGCAT	1 cut(s)	330
MseI	TTAA	3 cut(s)	75, 638, 946
MslI	CAYNNNNRTG	1 cut(s)	839
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	400, 505, 831, 863
NciI	CCSGG	1 cut(s)	189
NdeI	CATATG	1 cut(s)	764
NdeII	GATC	2 cut(s)	535, 871
NlaIV	GGNNCC	4 cut(s)	124, 177, 509, 517
NsiI	ATGCAT	1 cut(s)	330
NspI	RCATGY	3 cut(s)	373, 838, 857
NspV	TTCGAA	1 cut(s)	626
PaeR7I	CTCGAG	1 cut(s)	574
PciI	ACATGT	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	24, 844
PkrI	GCNGC	5 cut(s)	610, 707, 833, 919, 922
PleI	GAGTC	2 cut(s)	316, 466
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
PpsI	GAGTC	2 cut(s)	316, 466
Ppu21I	YACGTR	1 cut(s)	287
PscI	ACATGT	1 cut(s)	369
PshBI	ATTAAT	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	868
PspCI	CACGTG	1 cut(s)	287
PspN4I	GGNNCC	4 cut(s)	124, 177, 509, 517
PspPI	GGNCC	2 cut(s)	123, 653
PstI	CTGCAG	2 cut(s)	898, 922
PstNI	CAGNNNCTG	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	5 cut(s)	157, 177, 247, 274, 839
RsaNI	GTAC	5 cut(s)	156, 176, 246, 273, 838
RseI	CAYNNNNRTG	1 cut(s)	839
SacI	GAGCTC	1 cut(s)	868
SaqAI	TTAA	3 cut(s)	75, 638, 946
SatI	GCNGC	5 cut(s)	609, 706, 832, 918, 921
Sau3AI	GATC	2 cut(s)	535, 871
Sau96I	GGNCC	2 cut(s)	123, 653
ScaI	AGTACT	1 cut(s)	247
SchI	GAGTC	2 cut(s)	317, 466
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	286, 868
SfaNI	GCATC	2 cut(s)	315, 927
SfcI	CTRYAG	3 cut(s)	464, 894, 918
Sfr274I	CTCGAG	1 cut(s)	574
SfuI	TTCGAA	1 cut(s)	626
SinI	GGWCC	2 cut(s)	123, 653
SlaI	CTCGAG	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	839
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
SpeI	ACTAGT	1 cut(s)	248
SsiI	CCGC	5 cut(s)	179, 199, 554, 705, 759
SspI	AATATT	2 cut(s)	906, 933
SspMI	CTAG	2 cut(s)	249, 500
SstI	GAGCTC	1 cut(s)	868
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	2 cut(s)	126, 511
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	3 cut(s)	534, 575, 626
TatI	WGTACW	3 cut(s)	155, 245, 837
TauI	GCSGC	1 cut(s)	708
TfiI	GAWTC	2 cut(s)	24, 844
Tru1I	TTAA	3 cut(s)	75, 638, 946
Tru9I	TTAA	3 cut(s)	75, 638, 946
TscAI	CASTG	1 cut(s)	450
TseI	GCWGC	4 cut(s)	608, 831, 917, 920
TspDTI	ATGAA	4 cut(s)	120, 374, 726, 915
TspRI	CASTG	1 cut(s)	450
VneI	GTGCAC	1 cut(s)	282
VpaK11BI	GGWCC	2 cut(s)	123, 653
VspI	ATTAAT	1 cut(s)	75
XapI	RAATTY	3 cut(s)	115, 584, 628
XceI	RCATGY	3 cut(s)	373, 838, 857
XhoI	CTCGAG	1 cut(s)	574
XspI	CTAG	2 cut(s)	249, 500
ZrmI	AGTACT	1 cut(s)	247
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.