MD15G1079800.v1.1

Transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
5435226 .. 5438075
2850 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1079800.v1.1.491

Sequence Viewer

Length: 1041 bp
ATGGCGGATCTGTACGGAACAGCGCCGGACTCGGAAGAAATCTCGAACATTCTAAGCCAGCTCATCCACGGCCATGGCTCCTCCGCCTCTTCTTGCATGCCCTTTAAACCCACTTACATGCAGTCGTCAGTGCCGCCGCCAATCCAGGCGGCGACGCCGTCCGAGGTCTTGATTCCGGAGGCCAGGCATGAGGATCATCGCCGGTTTGCTCAATTGGTGAACCGGTCTGGCACGGACCAGCGAGTAGCGGGGGGAAATTCAAACTCTGCTGGTGTGTTGGCTTCGTCGTCCGCTTTCGATTTCTACGATTCCGGTGGCTACTTCACGGAGGAGGTGAAAGAAGGTATGGAGTCTGACGGGAGGAGGATTTCGTCTGAGAATGATCTCGGCGGTTATAGCTGTGACAGTGAGGGTCTCGAGGAGGCGGCGGATGCGCAACTGAACTCGGCACTGCCGCGGAGTTCATCAAAGAGGAGCAGAGCTGCTGAGGTCCATAATATGTCGGAAAAGAGAAGGAGGAGTAGGATTAATGAAAAGATGAAAGCTTTGCAGAACCTGATTCCGAATTCTAACAAGACGGATAAGGCGTCAATGCTGGATGAAGTGATTGAATATTTGAAGCAGCTCCAGCTTCAAGTACAGATGTTAACAATGAGAAATGGATTGAGTTTGCATCCGATGTGTTTACCAGGAGTCATGCAGCCTATGCAGTTGCCTCGTATATTTGAAGAAGGAAGTAATAAATTTCCAAAATCTGGCGAAGGAATAAACCCTTTTTACGGGACTCACGAGAACTCAGTGCTATCTGCTTTTAATTTATCCGCTGGATGCATGATATCAAATCCGCCAATGGTCATACCCTCGGTTGCAAATGTAGCAACTTCAGAAGCCACGTTTGGTTTTGAACCATCGATTCAAGCTCACTACAGACCCTACAGCGTCCCCTCCTCCTCTAAGGAACTCGTCAGTGACAGTGAACCACAAACAAAATTAGATACCATTCGAACAGGGAAAAGCACTTCATCGGACGTTGATGTATGA

Protein Analysis

347

Amino Acids

37.63

Weight (kDa)

5.36

Isoelectric Point (pI)

71.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 163 - 210 2.4e-13 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 169 - 214 3.5e-06 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012416)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 435
AccB7I CCANNNNNTGG 1 cut(s) 755
AccII CGCG 1 cut(s) 457
AccIII TCCGGA 1 cut(s) 175
AclWI GGATC 2 cut(s) 15, 201
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 3 cut(s) 256, 565, 743
AcuI CTGAAG 1 cut(s) 867
AcyI GRCGYC 2 cut(s) 155, 587
AfaI GTAC 2 cut(s) 14, 639
AfiI CCNNNNNNNGG 2 cut(s) 755, 779
AgeI ACCGGT 1 cut(s) 222
AgsI TTSAA 7 cut(s) 261, 611, 619, 635, 728, 905, 917
AjnI CCWGG 3 cut(s) 144, 182, 688
AjuI GAANNNNNNNTTGG 2 cut(s) 879, 911
AluBI AGCT 7 cut(s) 61, 399, 482, 545, 625, 631, 920
AluI AGCT 7 cut(s) 61, 399, 482, 545, 625, 631, 920
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 2 cut(s) 15, 201
AlwNI CAGNNNCTG 1 cut(s) 556
Ama87I CYCGRG 1 cut(s) 416
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 2 cut(s) 70, 180
ApeKI GCWGC 3 cut(s) 482, 622, 700
ApoI RAATTY 3 cut(s) 256, 565, 743
AseI ATTAAT 1 cut(s) 528
AsiGI ACCGGT 1 cut(s) 222
AspLEI GCGC 2 cut(s) 25, 436
AspS9I GGNCC 2 cut(s) 235, 490
AsuHPI GGTGA 2 cut(s) 229, 346
AsuII TTCGAA 1 cut(s) 1003
AvaI CYCGRG 1 cut(s) 416
AvaII GGWCC 2 cut(s) 235, 490
BauI CACGAG 1 cut(s) 788
BbvCI CCTCAGC 1 cut(s) 486
BbvI GCAGC 3 cut(s) 469, 634, 712
BccI CCATC 1 cut(s) 916
BceAI ACGGC 2 cut(s) 85, 142
BcgI CGANNNNNNTGC 2 cut(s) 698, 732
BciT130I CCWGG 3 cut(s) 146, 184, 690
BcoDI GTCTC 1 cut(s) 419
BfmI CTRYAG 2 cut(s) 925, 934
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 8 cut(s) 134, 137, 150, 426, 455, 483, 623, 701
BlsI GCNGC 8 cut(s) 135, 138, 151, 427, 456, 484, 624, 702
Bme1390I CCNGG 3 cut(s) 146, 184, 690
Bme18I GGWCC 2 cut(s) 235, 490
BmeT110I CYCGRG 1 cut(s) 416
BmgT120I GGNCC 2 cut(s) 235, 490
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 3 cut(s) 146, 184, 690
BmsI GCATC 3 cut(s) 421, 682, 818
BpmI CTGGAG 1 cut(s) 611
Bpu10I CCTNAGC 1 cut(s) 486
Bpu14I TTCGAA 1 cut(s) 1003
Bsa29I ATCGAT 1 cut(s) 911
BsaHI GRCGYC 2 cut(s) 155, 587
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 5 cut(s) 67, 73, 162, 455, 861
BsaWI WCCGGW 3 cut(s) 175, 222, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 755, 779
Bse118I RCCGGY 2 cut(s) 201, 222
BseAI TCCGGA 1 cut(s) 175
BseBI CCWGG 3 cut(s) 146, 184, 690
BseCI ATCGAT 1 cut(s) 911
BseDI CCNNGG 5 cut(s) 67, 73, 162, 455, 861
BseGI GGATG 5 cut(s) 63, 436, 604, 673, 833
BseLI CCNNNNNNNGG 2 cut(s) 755, 779
BseMII CTCAG 3 cut(s) 366, 477, 810
BseRI GAGGAG 8 cut(s) 70, 344, 376, 434, 487, 532, 937, 940
BseXI GCAGC 3 cut(s) 469, 634, 712
Bsh1236I CGCG 1 cut(s) 457
BshFI GGCC 2 cut(s) 72, 182
BshTI ACCGGT 1 cut(s) 222
BshVI ATCGAT 1 cut(s) 911
BsiHKCI CYCGRG 1 cut(s) 416
BsiSI CCGG 5 cut(s) 26, 176, 202, 223, 312
BslFI GGGAC 2 cut(s) 796, 926
BslI CCNNNNNNNGG 2 cut(s) 755, 779
BsmAI GTCTC 1 cut(s) 419
BsmFI GGGAC 2 cut(s) 796, 926
BsnI GGCC 2 cut(s) 72, 182
Bso31I GGTCTC 1 cut(s) 419
BsoBI CYCGRG 1 cut(s) 416
Bsp119I TTCGAA 1 cut(s) 1003
Bsp13I TCCGGA 1 cut(s) 175
Bsp143I GATC 3 cut(s) 7, 193, 382
Bsp19I CCATGG 1 cut(s) 73
BspANI GGCC 2 cut(s) 72, 182
BspCNI CTCAG 3 cut(s) 367, 478, 809
BspDI ATCGAT 1 cut(s) 911
BspEI TCCGGA 1 cut(s) 175
BspFNI CGCG 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 2 cut(s) 15, 201
BspT104I TTCGAA 1 cut(s) 1003
BspTNI GGTCTC 1 cut(s) 419
BsrFI RCCGGY 2 cut(s) 201, 222
BssAI RCCGGY 2 cut(s) 201, 222
BssECI CCNNGG 5 cut(s) 67, 73, 162, 455, 861
BssMI GATC 3 cut(s) 7, 193, 382
BssNI GRCGYC 2 cut(s) 155, 587
BssSI CACGAG 1 cut(s) 788
BssT1I CCWWGG 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 788
Bst2UI CCWGG 3 cut(s) 146, 184, 690
Bst4CI ACNGT 2 cut(s) 407, 974
Bst6I CTCTTC 1 cut(s) 94
BstACI GRCGYC 2 cut(s) 155, 587
BstAPI GCANNNNNTGC 1 cut(s) 706
BstBI TTCGAA 1 cut(s) 1003
BstC8I GCNNGC 2 cut(s) 59, 98
BstDEI CTNAG 5 cut(s) 53, 375, 486, 796, 954
BstDSI CCRYGG 3 cut(s) 67, 73, 455
BstF5I GGATG 5 cut(s) 63, 436, 604, 673, 833
BstFNI CGCG 1 cut(s) 457
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 436
BstKTI GATC 3 cut(s) 10, 196, 385
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 3 cut(s) 7, 193, 382
BstMWI GCNNNNNNNGC 5 cut(s) 396, 431, 628, 706, 875
BstNI CCWGG 3 cut(s) 146, 184, 690
BstNSI RCATGY 2 cut(s) 100, 121
BstSCI CCNGG 3 cut(s) 144, 182, 688
BstSFI CTRYAG 2 cut(s) 925, 934
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 3 cut(s) 469, 634, 712
BstX2I RGATCY 1 cut(s) 7
BstXI CCANNNNNNTGG 1 cut(s) 74
BstYI RGATCY 1 cut(s) 7
Bsu15I ATCGAT 1 cut(s) 911
BsuRI GGCC 2 cut(s) 72, 182
BsuTUI ATCGAT 1 cut(s) 911
BtgI CCRYGG 3 cut(s) 67, 73, 455
BtgZI GCGATG 1 cut(s) 182
BtsCI GGATG 5 cut(s) 63, 436, 604, 673, 833
BtsI GCAGTG 1 cut(s) 449
BtsIMutI CAGTG 6 cut(s) 135, 412, 449, 804, 973, 979
Cac8I GCNNGC 2 cut(s) 59, 98
CaiI CAGNNNCTG 1 cut(s) 556
CfoI GCGC 2 cut(s) 25, 436
Cfr10I RCCGGY 2 cut(s) 201, 222
Cfr13I GGNCC 2 cut(s) 235, 490
Cfr42I CCGCGG 1 cut(s) 458
ClaI ATCGAT 1 cut(s) 911
CseI GACGC 3 cut(s) 163, 576, 928
Csp6I GTAC 2 cut(s) 13, 638
CspAI ACCGGT 1 cut(s) 222
CviAII CATG 6 cut(s) 74, 97, 118, 188, 697, 832
CviQI GTAC 2 cut(s) 13, 638
DdeI CTNAG 5 cut(s) 53, 375, 486, 796, 954
DpnI GATC 3 cut(s) 9, 195, 384
DpnII GATC 3 cut(s) 7, 193, 382
DraI TTTAAA 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
EciI GGCGGA 4 cut(s) 20, 73, 443, 834
Eco130I CCWWGG 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 419
Eco32I GATATC 1 cut(s) 837
Eco47I GGWCC 2 cut(s) 235, 490
Eco57I CTGAAG 1 cut(s) 867
Eco88I CYCGRG 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 565
EcoRII CCWGG 3 cut(s) 144, 182, 688
EcoRV GATATC 1 cut(s) 837
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 833
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 6 cut(s) 77, 100, 121, 191, 700, 835
FaqI GGGAC 2 cut(s) 796, 926
FatI CATG 6 cut(s) 73, 96, 117, 187, 696, 831
FauI CCCGC 1 cut(s) 241
Fnu4HI GCNGC 8 cut(s) 134, 137, 150, 426, 455, 483, 623, 701
FokI GGATG 5 cut(s) 50, 443, 611, 660, 840
Fsp4HI GCNGC 8 cut(s) 134, 137, 150, 426, 455, 483, 623, 701
FspI TGCGCA 1 cut(s) 435
GlaI GCGC 2 cut(s) 24, 435
GluI GCNGC 8 cut(s) 134, 137, 150, 426, 455, 483, 623, 701
GsuI CTGGAG 1 cut(s) 611
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 2 cut(s) 72, 182
HapII CCGG 5 cut(s) 26, 176, 202, 223, 312
HgaI GACGC 3 cut(s) 163, 576, 928
HhaI GCGC 2 cut(s) 25, 436
Hin1I GRCGYC 2 cut(s) 155, 587
Hin1II CATG 6 cut(s) 77, 100, 121, 191, 700, 835
Hin6I GCGC 2 cut(s) 23, 434
HinP1I GCGC 2 cut(s) 23, 434
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 8 cut(s) 29, 172, 308, 350, 559, 693, 784, 913
HpaI GTTAAC 1 cut(s) 648
HpaII CCGG 5 cut(s) 26, 176, 202, 223, 312
HphI GGTGA 2 cut(s) 229, 346
Hpy166II GTNNAC 4 cut(s) 220, 648, 686, 977
Hpy188I TCNGA 9 cut(s) 34, 163, 355, 376, 505, 564, 678, 886, 1027
Hpy188III TCNNGA 5 cut(s) 43, 169, 176, 416, 788
Hpy8I GTNNAC 4 cut(s) 220, 648, 686, 977
Hpy99I CGWCG 2 cut(s) 157, 289
HpyAV CCTTC 4 cut(s) 335, 507, 725, 755
HpyCH4III ACNGT 2 cut(s) 407, 974
HpyCH4IV ACGT 2 cut(s) 893, 1029
HpyCH4V TGCA 8 cut(s) 96, 121, 550, 673, 700, 709, 831, 869
HpyF10VI GCNNNNNNNGC 5 cut(s) 396, 431, 628, 706, 875
HpyF3I CTNAG 5 cut(s) 53, 375, 486, 796, 954
HpySE526I ACGT 2 cut(s) 893, 1029
Hsp92I GRCGYC 2 cut(s) 155, 587
Hsp92II CATG 6 cut(s) 77, 100, 121, 191, 700, 835
HspAI GCGC 2 cut(s) 23, 434
Kpn2I TCCGGA 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 648
KspI CCGCGG 1 cut(s) 458
Kzo9I GATC 3 cut(s) 7, 193, 382
LmnI GCTCC 3 cut(s) 83, 474, 630
Lsp1109I GCAGC 3 cut(s) 469, 634, 712
LweI GCATC 3 cut(s) 421, 682, 818
MaeII ACGT 2 cut(s) 893, 1029
MaeIII GTNAC 2 cut(s) 401, 968
MalI GATC 3 cut(s) 9, 195, 384
MboI GATC 3 cut(s) 7, 193, 382
MboII GAAGA 3 cut(s) 47, 81, 740
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 1 cut(s) 7
MluCI AATT 6 cut(s) 212, 256, 565, 743, 814, 989
MlyI GAGTC 4 cut(s) 23, 359, 702, 778
MmeI TCCRAC 1 cut(s) 483
Mph1103I ATGCAT 1 cut(s) 833
MroI TCCGGA 1 cut(s) 175
MseI TTAA 4 cut(s) 105, 528, 647, 813
MslI CAYNNNNRTG 2 cut(s) 72, 116
MspA1I CMGCKG 2 cut(s) 457, 824
MspI CCGG 5 cut(s) 26, 176, 202, 223, 312
MspR9I CCNGG 3 cut(s) 146, 184, 690
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 3 cut(s) 146, 184, 690
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 5 cut(s) 396, 431, 628, 706, 875
NcoI CCATGG 1 cut(s) 73
NdeII GATC 3 cut(s) 7, 193, 382
NlaIII CATG 6 cut(s) 77, 100, 121, 191, 700, 835
NlaIV GGNNCC 1 cut(s) 79
NmeAIII GCCGAG 2 cut(s) 366, 425
NmuCI GTSAC 2 cut(s) 401, 968
NsbI TGCGCA 1 cut(s) 435
NsiI ATGCAT 1 cut(s) 833
NspI RCATGY 2 cut(s) 100, 121
NspV TTCGAA 1 cut(s) 1003
PaeI GCATGC 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 416
PcsI WCGNNNNNNNCGW 3 cut(s) 303, 584, 786
PfeI GAWTC 4 cut(s) 172, 308, 559, 913
PflFI GACNNNGTC 1 cut(s) 157
PflMI CCANNNNNTGG 1 cut(s) 755
PinAI ACCGGT 1 cut(s) 222
PkrI GCNGC 8 cut(s) 135, 138, 151, 427, 456, 484, 624, 702
PleI GAGTC 4 cut(s) 23, 358, 701, 778
PpsI GAGTC 4 cut(s) 23, 358, 701, 778
PshBI ATTAAT 1 cut(s) 528
Psp6I CCWGG 3 cut(s) 144, 182, 688
PspGI CCWGG 3 cut(s) 144, 182, 688
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 235, 490
PstNI CAGNNNCTG 1 cut(s) 556
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 157
RsaI GTAC 2 cut(s) 14, 639
RsaNI GTAC 2 cut(s) 13, 638
RseI CAYNNNNRTG 2 cut(s) 72, 116
SacII CCGCGG 1 cut(s) 458
SaqAI TTAA 4 cut(s) 105, 528, 647, 813
SatI GCNGC 8 cut(s) 134, 137, 150, 426, 455, 483, 623, 701
Sau3AI GATC 3 cut(s) 7, 193, 382
Sau96I GGNCC 2 cut(s) 235, 490
SchI GAGTC 4 cut(s) 23, 359, 702, 778
ScrFI CCNGG 3 cut(s) 146, 184, 690
SfaNI GCATC 3 cut(s) 421, 682, 818
SfcI CTRYAG 2 cut(s) 925, 934
Sfr274I CTCGAG 1 cut(s) 416
Sfr303I CCGCGG 1 cut(s) 458
SfuI TTCGAA 1 cut(s) 1003
SgrBI CCGCGG 1 cut(s) 458
SinI GGWCC 2 cut(s) 235, 490
SlaI CTCGAG 1 cut(s) 416
SmiMI CAYNNNNRTG 2 cut(s) 72, 116
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
SphI GCATGC 1 cut(s) 100
Sse9I AATT 6 cut(s) 212, 256, 565, 743, 814, 989
SspI AATATT 1 cut(s) 614
StyD4I CCNGG 3 cut(s) 144, 182, 688
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 2 cut(s) 407, 974
TaiI ACGT 2 cut(s) 896, 1032
TaqI TCGA 5 cut(s) 44, 297, 417, 911, 1003
TasI AATT 6 cut(s) 212, 256, 565, 743, 814, 989
TatI WGTACW 1 cut(s) 637
TauI GCSGC 5 cut(s) 136, 139, 152, 428, 457
TfiI GAWTC 4 cut(s) 172, 308, 559, 913
Tru1I TTAA 4 cut(s) 105, 528, 647, 813
Tru9I TTAA 4 cut(s) 105, 528, 647, 813
TscAI CASTG 6 cut(s) 135, 412, 456, 804, 973, 979
TseFI GTSAC 2 cut(s) 401, 968
TseI GCWGC 3 cut(s) 482, 622, 700
Tsp45I GTSAC 2 cut(s) 401, 968
TspDTI ATGAA 5 cut(s) 453, 546, 554, 615, 1011
TspGWI ACGGA 4 cut(s) 30, 248, 341, 593
TspRI CASTG 6 cut(s) 135, 412, 456, 804, 973, 979
Tth111I GACNNNGTC 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 2 cut(s) 235, 490
VspI ATTAAT 1 cut(s) 528
XapI RAATTY 3 cut(s) 256, 565, 743
XceI RCATGY 2 cut(s) 100, 121
XhoI CTCGAG 1 cut(s) 416
Zsp2I ATGCAT 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.