Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012416

Physical Location & Seq

Genomic Coordinates Forward (+)

3359701 .. 3362172

Gene Structure 2472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCGGATCTGTACGGAACGCCGCCGCCGGACTCGGAAGAAATCTCCAACATTCTCAGCCACCTCCTCCACGGCGGCTCCTCCTCTTCCTGCGGGGCGCCCTTCAAGCCCGCCACTTACATGCACCTACTCAACTCCTCCTCAGTGCCGCCGCCTCACGAGCATCCTCAATTGTTGGCCCGATCGGCGGAACGGTCCGACTCCGACCGCCCCTCTGAATTCAACTTCTCCGATTCCGGCGGGTATTTCATGGACTCCGACGCCAACACTTCAAAGAAGGGGAGGAGAGTTTCGTCGGAGAATGATCTTGGTGACGTCAGCTGTGACAGTGAGGGTCCTGAAGCGCCGGAGGTTCCATTAAACCCAGCTCCGCCGCGTAGTTTGTCCAAGAGAAGCAGAGCGGCGGAGGTCCATAACTTGTCGGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAAATGAAAGCTTTGCAGAACCTGATTCCAAATTCTAACAAGACGGATAAGGCTTCGATGCTGGATGAAGCAATTGAGTATTTGAAGCAGCTCCAGCTTCAAGTACAGATGTTAACGATGAGAAATGGACTGGGTTTGCATCCCATGTGCTTACCAGGAATGATGCAGCCTGTGCAGTTGCCTCATATGGCATTGGGCTTTGACGAAGGAAGTAACAAAGTTCCAAAGTCTAGCAGAGGAATGAGCCCATTTTTTGGTAGTGAAGAAAACTCAATGCAATCAGCTTATAATATTTCCAGTGGACGCACAATCTTGAATCAGTCAATGGTCGTACCCTCAGCTGCAAATGTCCCCACTTTGGAAGCCTCATTCGTCTTTGAACCATCGACTCAAGCTTACTACAGACCATTCTTAGCTGCCACATCTTCTAAGGAACTATTATTCGGTGAAGGTGAGCCGTCCTCAAAATCAGATTCCAATCGGACTGGGATAAACTCTTCATCAGATGCTGATAAGGTGTCCTCAAAGAGACCTGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

332

Amino Acids

35.95

Weight (kDa)

5.94

Isoelectric Point (pI)

78.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	136 - 183	4.6e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	142 - 187	4.3e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67110 AT5G67110 AT5G67110
fragaria_vesca	FvH4_2g34100
malus_domestica	MD15G1079800.v1.1
prunus_persica	Prupe.1G432800_v2.0.a1
pyrus_communis	pycom08g07960 pycom15g07430
rosa_chinensis	RchiOBHm_Chr6g0308251
rosa_laevigata	RLG00000010654
rosa_multiflora	Rmu_sc0012549.1_g000001 Rmu_ssc0000355.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160320
rosa_rugosa	Rorug06G0365400
rosa_samantha	Rh6AG474400 Rh6BG485100 Rh6CG490100 Rh6DG476500
rosa_wichuraiana	Rw6G041380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
AatII	GACGTC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	97
AccB7I	CCANNNNNTGG	1 cut(s)	707
AccBSI	CCGCTC	1 cut(s)	401
AccII	CGCG	1 cut(s)	376
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	218, 484
AcuI	CTGAAG	1 cut(s)	360
AcyI	GRCGYC	3 cut(s)	98, 261, 315
AfaI	GTAC	3 cut(s)	14, 558, 786
AfiI	CCNNNNNNNGG	3 cut(s)	187, 707, 811
AgsI	TTSAA	7 cut(s)	106, 223, 273, 538, 554, 769, 833
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	9 cut(s)	321, 368, 464, 544, 550, 737, 794, 848, 869
AluI	AGCT	9 cut(s)	321, 368, 464, 544, 550, 737, 794, 848, 869
Alw26I	GTCTC	1 cut(s)	976
AlwI	GGATC	1 cut(s)	15
AlwNI	CAGNNNCTG	2 cut(s)	475, 962
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	4 cut(s)	541, 619, 794, 869
ApoI	RAATTY	2 cut(s)	218, 484
AseI	ATTAAT	1 cut(s)	447
AspLEI	GCGC	2 cut(s)	100, 346
AspS9I	GGNCC	4 cut(s)	178, 195, 335, 409
AsuHPI	GGTGA	3 cut(s)	323, 911, 917
AvaII	GGWCC	3 cut(s)	195, 335, 409
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	701
BauI	CACGAG	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	790
BbvI	GCAGC	4 cut(s)	553, 631, 781, 856
BccI	CCATC	1 cut(s)	844
BceAI	ACGGC	2 cut(s)	88, 895
BciT130I	CCWGG	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	976
BfaI	CTAG	1 cut(s)	684
BfmI	CTRYAG	1 cut(s)	853
BfoI	RGCGCY	2 cut(s)	101, 347
BglI	GCCNNNNNGGC	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	609
Bme18I	GGWCC	3 cut(s)	195, 335, 409
BmgT120I	GGNCC	4 cut(s)	178, 195, 335, 409
BmiI	GGNNCC	4 cut(s)	79, 99, 336, 354
BmrFI	CCNGG	1 cut(s)	609
BmrI	ACTGGG	2 cut(s)	593, 948
BmsI	GCATC	5 cut(s)	172, 501, 601, 606, 949
BmuI	ACTGGG	2 cut(s)	593, 948
BplI	GAGNNNNNCTC	2 cut(s)	899, 931
BpmI	CTGGAG	1 cut(s)	530
Bpu10I	CCTNAGC	1 cut(s)	790
BpuEI	CTTGAG	1 cut(s)	828
BsaBI	GATNNNNATC	1 cut(s)	930
BsaHI	GRCGYC	3 cut(s)	98, 261, 315
BsaI	GGTCTC	1 cut(s)	976
BsaJI	CCNNGG	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 707, 811
Bse1I	ACTGG	3 cut(s)	588, 750, 943
Bse8I	GATNNNNATC	1 cut(s)	930
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	3 cut(s)	163, 523, 592
BseJI	GATNNNNATC	1 cut(s)	930
BseLI	CCNNNNNNNGG	3 cut(s)	187, 707, 811
BseMII	CTCAG	3 cut(s)	70, 156, 804
BseNI	ACTGG	3 cut(s)	588, 750, 943
BseRI	GAGGAG	7 cut(s)	56, 70, 73, 127, 130, 298, 451
BseXI	GCAGC	4 cut(s)	553, 631, 781, 856
BseYI	CCCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	376
Bsh1285I	CGRYCG	2 cut(s)	185, 208
BshFI	GGCC	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	97
BsiEI	CGRYCG	2 cut(s)	185, 208
BsiSI	CCGG	3 cut(s)	29, 237, 347
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	3 cut(s)	187, 707, 811
BsmAI	GTCTC	1 cut(s)	976
BsmFI	GGGAC	1 cut(s)	788
BsnI	GGCC	1 cut(s)	179
Bso31I	GGTCTC	1 cut(s)	976
Bsp1286I	GDGCHC	1 cut(s)	701
Bsp143I	GATC	3 cut(s)	7, 182, 304
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	3 cut(s)	69, 155, 803
BspFNI	CGCG	1 cut(s)	376
BspLI	GGNNCC	4 cut(s)	79, 99, 336, 354
BspPI	GGATC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	976
BsrBI	CCGCTC	1 cut(s)	401
BsrI	ACTGG	3 cut(s)	588, 750, 943
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	3 cut(s)	7, 182, 304
BssNI	GRCGYC	3 cut(s)	98, 261, 315
BssSI	CACGAG	1 cut(s)	158
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	2 cut(s)	195, 329
Bst6I	CTCTTC	2 cut(s)	91, 955
BstACI	GRCGYC	3 cut(s)	98, 261, 315
BstAPI	GCANNNNNTGC	1 cut(s)	625
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	5 cut(s)	56, 142, 790, 865, 882
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	3 cut(s)	163, 523, 592
BstFNI	CGCG	1 cut(s)	376
BstH2I	RGCGCY	2 cut(s)	101, 347
BstHHI	GCGC	2 cut(s)	100, 346
BstKTI	GATC	3 cut(s)	10, 185, 307
BstMAI	GTCTC	1 cut(s)	976
BstMBI	GATC	3 cut(s)	7, 182, 304
BstMCI	CGRYCG	2 cut(s)	185, 208
BstMWI	GCNNNNNNNGC	5 cut(s)	106, 160, 185, 547, 625
BstNI	CCWGG	1 cut(s)	609
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	607
BstSFI	CTRYAG	1 cut(s)	853
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	4 cut(s)	553, 631, 781, 856
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	163, 523, 592
BtsIMutI	CAGTG	3 cut(s)	150, 334, 757
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	2 cut(s)	475, 962
CfoI	GCGC	2 cut(s)	100, 346
Cfr13I	GGNCC	4 cut(s)	178, 195, 335, 409
CpoI	CGGWCCG	1 cut(s)	195
CseI	GACGC	2 cut(s)	269, 765
Csp6I	GTAC	3 cut(s)	13, 557, 785
CspI	CGGWCCG	1 cut(s)	195
CviAII	CATG	3 cut(s)	121, 250, 598
CviQI	GTAC	3 cut(s)	13, 557, 785
DdeI	CTNAG	5 cut(s)	56, 142, 790, 865, 882
DinI	GGCGCC	1 cut(s)	99
DpnI	GATC	3 cut(s)	9, 184, 306
DpnII	GATC	3 cut(s)	7, 182, 304
Eam1104I	CTCTTC	2 cut(s)	91, 955
EarI	CTCTTC	2 cut(s)	91, 955
EciI	GGCGGA	4 cut(s)	20, 203, 360, 419
Eco24I	GRGCYC	1 cut(s)	701
Eco31I	GGTCTC	1 cut(s)	976
Eco47I	GGWCC	3 cut(s)	195, 335, 409
Eco57I	CTGAAG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	701
EgeI	GGCGCC	1 cut(s)	99
EheI	GGCGCC	1 cut(s)	99
FaeI	CATG	3 cut(s)	124, 253, 601
FaiI	YATR	8 cut(s)	122, 251, 414, 599, 639, 641, 741, 994
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	3 cut(s)	120, 249, 597
FauI	CCCGC	3 cut(s)	86, 118, 233
FauNDI	CATATG	1 cut(s)	639
FokI	GGATG	3 cut(s)	150, 530, 579
FriOI	GRGCYC	1 cut(s)	701
FspBI	CTAG	1 cut(s)	684
GlaI	GCGC	2 cut(s)	99, 345
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	530
HaeII	RGCGCY	2 cut(s)	101, 347
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	3 cut(s)	29, 237, 347
HgaI	GACGC	2 cut(s)	269, 765
HhaI	GCGC	2 cut(s)	100, 346
Hin1I	GRCGYC	3 cut(s)	98, 261, 315
Hin1II	CATG	3 cut(s)	124, 253, 601
Hin6I	GCGC	2 cut(s)	98, 344
HinP1I	GCGC	2 cut(s)	98, 344
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HindIII	AAGCTT	2 cut(s)	462, 846
HinfI	GANTC	8 cut(s)	32, 200, 233, 254, 478, 769, 841, 926
HpaI	GTTAAC	1 cut(s)	567
HpaII	CCGG	3 cut(s)	29, 237, 347
HphI	GGTGA	3 cut(s)	323, 911, 917
Hpy166II	GTNNAC	2 cut(s)	567, 755
Hpy188III	TCNNGA	3 cut(s)	158, 338, 766
Hpy8I	GTNNAC	2 cut(s)	567, 755
Hpy99I	CGWCG	2 cut(s)	263, 298
HpyAV	CCTTC	5 cut(s)	112, 271, 426, 653, 896
HpyCH4III	ACNGT	2 cut(s)	195, 329
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	7 cut(s)	124, 469, 592, 619, 628, 730, 797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	106, 160, 185, 547, 625
HpyF3I	CTNAG	5 cut(s)	56, 142, 790, 865, 882
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	3 cut(s)	98, 261, 315
Hsp92II	CATG	3 cut(s)	124, 253, 601
HspAI	GCGC	2 cut(s)	98, 344
KasI	GGCGCC	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	567
Kzo9I	GATC	3 cut(s)	7, 182, 304
LmnI	GCTCC	3 cut(s)	83, 373, 549
Lsp1109I	GCAGC	4 cut(s)	553, 631, 781, 856
LweI	GCATC	5 cut(s)	172, 501, 601, 606, 949
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	311, 323, 665
MalI	GATC	3 cut(s)	9, 184, 306
MbiI	CCGCTC	1 cut(s)	401
MboI	GATC	3 cut(s)	7, 182, 304
MboII	GAAGA	5 cut(s)	50, 78, 728, 870, 942
MfeI	CAATTG	2 cut(s)	170, 525
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	701
MluCI	AATT	4 cut(s)	170, 218, 484, 525
Mly113I	GGCGCC	1 cut(s)	98
MlyI	GAGTC	4 cut(s)	26, 194, 248, 835
MmeI	TCCRAC	6 cut(s)	72, 222, 228, 276, 282, 402
MseI	TTAA	3 cut(s)	359, 447, 566
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	2 cut(s)	321, 794
MspI	CCGG	3 cut(s)	29, 237, 347
MspR9I	CCNGG	1 cut(s)	609
MunI	CAATTG	2 cut(s)	170, 525
MvaI	CCWGG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	5 cut(s)	106, 160, 185, 547, 625
NarI	GGCGCC	1 cut(s)	98
NdeI	CATATG	1 cut(s)	639
NdeII	GATC	3 cut(s)	7, 182, 304
NlaIII	CATG	3 cut(s)	124, 253, 601
NlaIV	GGNNCC	4 cut(s)	79, 99, 336, 354
NmuCI	GTSAC	2 cut(s)	311, 323
NspI	RCATGY	1 cut(s)	124
PfeI	GAWTC	4 cut(s)	233, 478, 769, 926
PflMI	CCANNNNNTGG	1 cut(s)	707
Ple19I	CGATCG	1 cut(s)	185
PleI	GAGTC	4 cut(s)	26, 194, 248, 835
PluTI	GGCGCC	1 cut(s)	101
PpsI	GAGTC	4 cut(s)	26, 194, 248, 835
PpuMI	RGGWCCY	1 cut(s)	335
PshBI	ATTAAT	1 cut(s)	447
PsiI	TTATAA	1 cut(s)	741
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	607
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	4 cut(s)	79, 99, 336, 354
PspPI	GGNCC	4 cut(s)	178, 195, 335, 409
PspPPI	RGGWCCY	1 cut(s)	335
PstNI	CAGNNNCTG	2 cut(s)	475, 962
PsuI	RGATCY	1 cut(s)	7
PvuI	CGATCG	1 cut(s)	185
PvuII	CAGCTG	2 cut(s)	321, 794
RsaI	GTAC	3 cut(s)	14, 558, 786
RsaNI	GTAC	3 cut(s)	13, 557, 785
RseI	CAYNNNNRTG	1 cut(s)	119
Rsr2I	CGGWCCG	1 cut(s)	195
RsrII	CGGWCCG	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	359, 447, 566
Sau3AI	GATC	3 cut(s)	7, 182, 304
Sau96I	GGNCC	4 cut(s)	178, 195, 335, 409
SchI	GAGTC	4 cut(s)	26, 194, 248, 835
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	1 cut(s)	701
SfaNI	GCATC	5 cut(s)	172, 501, 601, 606, 949
SfcI	CTRYAG	1 cut(s)	853
SfoI	GGCGCC	1 cut(s)	99
SinI	GGWCC	3 cut(s)	195, 335, 409
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	843
SmoI	CTYRAG	1 cut(s)	843
Sse9I	AATT	4 cut(s)	170, 218, 484, 525
SspDI	GGCGCC	1 cut(s)	97
SspI	AATATT	1 cut(s)	745
SspMI	CTAG	1 cut(s)	684
StyD4I	CCNGG	1 cut(s)	607
TaaI	ACNGT	2 cut(s)	195, 329
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	509, 839
TasI	AATT	4 cut(s)	170, 218, 484, 525
TatI	WGTACW	1 cut(s)	556
TauI	GCSGC	7 cut(s)	25, 28, 78, 151, 154, 376, 404
TfiI	GAWTC	4 cut(s)	233, 478, 769, 926
Tru1I	TTAA	3 cut(s)	359, 447, 566
Tru9I	TTAA	3 cut(s)	359, 447, 566
TscAI	CASTG	3 cut(s)	150, 334, 757
TseFI	GTSAC	2 cut(s)	311, 323
TseI	GCWGC	4 cut(s)	541, 619, 794, 869
Tsp45I	GTSAC	2 cut(s)	311, 323
TspDTI	ATGAA	4 cut(s)	238, 473, 534, 942
TspGWI	ACGGA	2 cut(s)	30, 512
TspRI	CASTG	3 cut(s)	150, 334, 757
Van91I	CCANNNNNTGG	1 cut(s)	707
VpaK11BI	GGWCC	3 cut(s)	195, 335, 409
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	2 cut(s)	218, 484
XceI	RCATGY	1 cut(s)	124
XspI	CTAG	1 cut(s)	684
ZraI	GACGTC	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.