Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0012416

Physical Location & Seq

Genomic Coordinates Reverse (-)

68995419 .. 68997880

Gene Structure 2462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG485100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGGATCTGTACGGAACGCCGCCGGACTCGGAAGAAATCTCCAACATTCTCAGCCACCTCCTCCACGGCGGCTCCTCCTCTTCCTGCGGGGCGCCCTTCAAGCCCGCCACTTACATGCACCTACTCAACTCCTCCTCAGTGCCTCCGCCGCCGCACGAGCATCCTCAATTGTTGCCCCGATCGGCGGACCGGTCCGACTCCGACCGCCCCTCTGACTTCAACTTCTCCGATTCCGGCGGCGGGTATTTCATGGACTCCGACGCCAACACTTCAAAGAAGGGGAGGAGAGTTCCGTCGGAGAATGATCTCGGTGACGTCAGCTGTGACAGTGAGGGTCCTGAAGCGCCGGAGGTTCCATTAAACCCAGCTCCGCCGCGTAGTTTGTCCAAGAGAAGCAGAGCGGCGGAGGTCCATAACTTGTCGGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAAATGAAAGCTTTGCAGAACCTGATTCCAAATTCTAACAAGACGGATAAGGCTTCGATGCTGGATGAAGCAATTGAGTATTTGAAGCAGCTCCAGCTTCAAGTACAGATGTTAACGATGAGAAATGGACTGGGTTTGCATCCCATGTGCTTACCAGGAATGATGCAGCCTGTGCAGTTTCCTCATATGGCATTGGGCTTTGACGAAGGAAGTAACAAAGTTCCAAAGTCTAGCAGAGGAATGAGCCCATTTTTTGGTAGTGAAGAAAACTCAATGCAATCAGCTTATAATATTTCCAGTGGATGCACAATCTTGAATCAGCCAATGGTCGTACCCTCAGCTGCAAATGTCCCTACTTTGGAAGCCTCATTCGTCCTTGAACCATCGACTCAAGCTTACTACAGACCCTTCTTTGCTGCCACATCTTCTAAGGAACTATTATTCGGTGAAGGTGAGCCGTCCTCAAAATCAGATTCCAATCGGACTGGGATAAACTCTTCATCAGATGCTGATAAGGTGTCCTCAAAGAGACCTGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

332

Amino Acids

36.01

Weight (kDa)

5.79

Isoelectric Point (pI)

77.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	137 - 184	4.6e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	143 - 188	4.3e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67110 AT5G67110 AT5G67110
fragaria_vesca	FvH4_2g34100
malus_domestica	MD15G1079800.v1.1
prunus_persica	Prupe.1G432800_v2.0.a1
pyrus_communis	pycom08g07960 pycom15g07430
rosa_chinensis	RchiOBHm_Chr6g0308251
rosa_laevigata	RLG00000010654
rosa_multiflora	Rmu_sc0012549.1_g000001 Rmu_ssc0000355.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160320
rosa_rugosa	Rorug06G0365400
rosa_samantha	Rh6AG474400 Rh6BG485100 Rh6CG490100 Rh6DG476500
rosa_wichuraiana	Rw6G041380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	744
AatII	GACGTC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	94
AccB7I	CCANNNNNTGG	1 cut(s)	710
AccBSI	CCGCTC	1 cut(s)	404
AccII	CGCG	1 cut(s)	379
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	1 cut(s)	363
AcyI	GRCGYC	3 cut(s)	95, 264, 318
AfaI	GTAC	3 cut(s)	14, 561, 789
AfiI	CCNNNNNNNGG	4 cut(s)	187, 243, 710, 814
AgeI	ACCGGT	1 cut(s)	192
AgsI	TTSAA	7 cut(s)	103, 223, 276, 541, 557, 772, 836
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	8 cut(s)	324, 371, 467, 547, 553, 740, 797, 851
AluI	AGCT	8 cut(s)	324, 371, 467, 547, 553, 740, 797, 851
Alw26I	GTCTC	1 cut(s)	979
AlwI	GGATC	1 cut(s)	15
AlwNI	CAGNNNCTG	2 cut(s)	478, 965
ApeKI	GCWGC	4 cut(s)	544, 622, 797, 872
ApoI	RAATTY	1 cut(s)	487
AseI	ATTAAT	1 cut(s)	450
AsiGI	ACCGGT	1 cut(s)	192
AspLEI	GCGC	2 cut(s)	97, 349
AspS9I	GGNCC	4 cut(s)	190, 195, 338, 412
AsuHPI	GGTGA	3 cut(s)	326, 914, 920
AvaII	GGWCC	4 cut(s)	190, 195, 338, 412
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	704
BauI	CACGAG	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	793
BbvI	GCAGC	4 cut(s)	556, 634, 784, 859
BccI	CCATC	1 cut(s)	847
BceAI	ACGGC	2 cut(s)	85, 898
BciT130I	CCWGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	979
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	856
BfoI	RGCGCY	2 cut(s)	98, 350
Bme1390I	CCNGG	1 cut(s)	612
Bme18I	GGWCC	4 cut(s)	190, 195, 338, 412
BmgT120I	GGNCC	4 cut(s)	190, 195, 338, 412
BmiI	GGNNCC	4 cut(s)	76, 96, 339, 357
BmrFI	CCNGG	1 cut(s)	612
BmrI	ACTGGG	2 cut(s)	596, 951
BmsI	GCATC	6 cut(s)	172, 504, 604, 609, 749, 952
BmuI	ACTGGG	2 cut(s)	596, 951
BplI	GAGNNNNNCTC	2 cut(s)	902, 934
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	793
BpuEI	CTTGAG	1 cut(s)	831
BsaBI	GATNNNNATC	1 cut(s)	933
BsaHI	GRCGYC	3 cut(s)	95, 264, 318
BsaI	GGTCTC	1 cut(s)	979
BsaJI	CCNNGG	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	4 cut(s)	187, 243, 710, 814
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	3 cut(s)	591, 753, 946
Bse8I	GATNNNNATC	1 cut(s)	933
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	4 cut(s)	163, 526, 595, 764
BseJI	GATNNNNATC	1 cut(s)	933
BseLI	CCNNNNNNNGG	4 cut(s)	187, 243, 710, 814
BseMII	CTCAG	3 cut(s)	67, 153, 807
BseNI	ACTGG	3 cut(s)	591, 753, 946
BseRI	GAGGAG	7 cut(s)	53, 67, 70, 124, 127, 301, 454
BseXI	GCAGC	4 cut(s)	556, 634, 784, 859
BseYI	CCCAGC	1 cut(s)	367
BsgI	GTGCAG	1 cut(s)	650
Bsh1236I	CGCG	1 cut(s)	379
Bsh1285I	CGRYCG	2 cut(s)	185, 208
BshNI	GGYRCC	1 cut(s)	94
BshTI	ACCGGT	1 cut(s)	192
BsiEI	CGRYCG	2 cut(s)	185, 208
BsiSI	CCGG	4 cut(s)	26, 193, 237, 350
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	4 cut(s)	187, 243, 710, 814
BsmAI	GTCTC	1 cut(s)	979
BsmFI	GGGAC	1 cut(s)	791
Bso31I	GGTCTC	1 cut(s)	979
Bsp1286I	GDGCHC	1 cut(s)	704
Bsp143I	GATC	3 cut(s)	7, 182, 307
BspCNI	CTCAG	3 cut(s)	66, 152, 806
BspFNI	CGCG	1 cut(s)	379
BspLI	GGNNCC	4 cut(s)	76, 96, 339, 357
BspPI	GGATC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	979
BsrBI	CCGCTC	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	3 cut(s)	591, 753, 946
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	3 cut(s)	7, 182, 307
BssNI	GRCGYC	3 cut(s)	95, 264, 318
BssSI	CACGAG	1 cut(s)	158
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	2 cut(s)	88, 958
BstACI	GRCGYC	3 cut(s)	95, 264, 318
BstAPI	GCANNNNNTGC	1 cut(s)	628
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	4 cut(s)	53, 139, 793, 885
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	4 cut(s)	163, 526, 595, 764
BstFNI	CGCG	1 cut(s)	379
BstH2I	RGCGCY	2 cut(s)	98, 350
BstHHI	GCGC	2 cut(s)	97, 349
BstKTI	GATC	3 cut(s)	10, 185, 310
BstMAI	GTCTC	1 cut(s)	979
BstMBI	GATC	3 cut(s)	7, 182, 307
BstMCI	CGRYCG	2 cut(s)	185, 208
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 151, 160, 550, 628
BstNI	CCWGG	1 cut(s)	612
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	610
BstSFI	CTRYAG	1 cut(s)	856
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	4 cut(s)	556, 634, 784, 859
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	4 cut(s)	163, 526, 595, 764
BtsIMutI	CAGTG	3 cut(s)	147, 337, 760
Cac8I	GCNNGC	1 cut(s)	108
CaiI	CAGNNNCTG	2 cut(s)	478, 965
CfoI	GCGC	2 cut(s)	97, 349
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	4 cut(s)	190, 195, 338, 412
CpoI	CGGWCCG	2 cut(s)	190, 195
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	3 cut(s)	13, 560, 788
CspAI	ACCGGT	1 cut(s)	192
CspI	CGGWCCG	2 cut(s)	190, 195
CviAII	CATG	3 cut(s)	118, 253, 601
CviQI	GTAC	3 cut(s)	13, 560, 788
DdeI	CTNAG	4 cut(s)	53, 139, 793, 885
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	3 cut(s)	9, 184, 309
DpnII	GATC	3 cut(s)	7, 182, 307
Eam1104I	CTCTTC	2 cut(s)	88, 958
EarI	CTCTTC	2 cut(s)	88, 958
EciI	GGCGGA	5 cut(s)	20, 138, 203, 363, 422
Eco24I	GRGCYC	1 cut(s)	704
Eco31I	GGTCTC	1 cut(s)	979
Eco47I	GGWCC	4 cut(s)	190, 195, 338, 412
Eco57I	CTGAAG	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	704
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
FaeI	CATG	3 cut(s)	121, 256, 604
FaiI	YATR	8 cut(s)	119, 254, 417, 602, 642, 644, 744, 997
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	3 cut(s)	117, 252, 600
FauI	CCCGC	3 cut(s)	83, 115, 236
FauNDI	CATATG	1 cut(s)	642
FokI	GGATG	4 cut(s)	150, 533, 582, 771
FriOI	GRGCYC	1 cut(s)	704
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	2 cut(s)	96, 348
GsaI	CCCAGC	1 cut(s)	371
GsuI	CTGGAG	1 cut(s)	533
HaeII	RGCGCY	2 cut(s)	98, 350
HapII	CCGG	4 cut(s)	26, 193, 237, 350
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	2 cut(s)	97, 349
Hin1I	GRCGYC	3 cut(s)	95, 264, 318
Hin1II	CATG	3 cut(s)	121, 256, 604
Hin6I	GCGC	2 cut(s)	95, 347
HinP1I	GCGC	2 cut(s)	95, 347
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HindIII	AAGCTT	2 cut(s)	465, 849
HinfI	GANTC	8 cut(s)	29, 200, 233, 257, 481, 772, 844, 929
HpaI	GTTAAC	1 cut(s)	570
HpaII	CCGG	4 cut(s)	26, 193, 237, 350
HphI	GGTGA	3 cut(s)	326, 914, 920
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188III	TCNNGA	2 cut(s)	341, 769
Hpy8I	GTNNAC	1 cut(s)	570
Hpy99I	CGWCG	2 cut(s)	266, 301
HpyAV	CCTTC	6 cut(s)	109, 274, 429, 656, 874, 899
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	8 cut(s)	121, 472, 595, 622, 631, 733, 762, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 151, 160, 550, 628
HpyF3I	CTNAG	4 cut(s)	53, 139, 793, 885
HpySE526I	ACGT	1 cut(s)	318
Hsp92I	GRCGYC	3 cut(s)	95, 264, 318
Hsp92II	CATG	3 cut(s)	121, 256, 604
HspAI	GCGC	2 cut(s)	95, 347
KasI	GGCGCC	1 cut(s)	94
KspAI	GTTAAC	1 cut(s)	570
Kzo9I	GATC	3 cut(s)	7, 182, 307
LmnI	GCTCC	3 cut(s)	80, 376, 552
Lsp1109I	GCAGC	4 cut(s)	556, 634, 784, 859
LweI	GCATC	6 cut(s)	172, 504, 604, 609, 749, 952
MaeI	CTAG	1 cut(s)	687
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	3 cut(s)	314, 326, 668
MalI	GATC	3 cut(s)	9, 184, 309
MbiI	CCGCTC	1 cut(s)	404
MboI	GATC	3 cut(s)	7, 182, 307
MboII	GAAGA	5 cut(s)	47, 75, 731, 873, 945
MfeI	CAATTG	2 cut(s)	170, 528
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	704
MluCI	AATT	3 cut(s)	170, 487, 528
Mly113I	GGCGCC	1 cut(s)	95
MlyI	GAGTC	4 cut(s)	23, 194, 251, 838
MmeI	TCCRAC	6 cut(s)	69, 222, 228, 279, 285, 405
MseI	TTAA	3 cut(s)	362, 450, 569
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	324, 797
MspI	CCGG	4 cut(s)	26, 193, 237, 350
MspR9I	CCNGG	1 cut(s)	612
MunI	CAATTG	2 cut(s)	170, 528
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	5 cut(s)	103, 151, 160, 550, 628
NarI	GGCGCC	1 cut(s)	95
NdeI	CATATG	1 cut(s)	642
NdeII	GATC	3 cut(s)	7, 182, 307
NlaIII	CATG	3 cut(s)	121, 256, 604
NlaIV	GGNNCC	4 cut(s)	76, 96, 339, 357
NmuCI	GTSAC	2 cut(s)	314, 326
NspI	RCATGY	1 cut(s)	121
PfeI	GAWTC	4 cut(s)	233, 481, 772, 929
PflMI	CCANNNNNTGG	1 cut(s)	710
PinAI	ACCGGT	1 cut(s)	192
Ple19I	CGATCG	1 cut(s)	185
PleI	GAGTC	4 cut(s)	23, 194, 251, 838
PluTI	GGCGCC	1 cut(s)	98
PpsI	GAGTC	4 cut(s)	23, 194, 251, 838
PpuMI	RGGWCCY	1 cut(s)	338
PshBI	ATTAAT	1 cut(s)	450
PsiI	TTATAA	1 cut(s)	744
Psp5II	RGGWCCY	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	610
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	4 cut(s)	76, 96, 339, 357
PspPI	GGNCC	4 cut(s)	190, 195, 338, 412
PspPPI	RGGWCCY	1 cut(s)	338
PstNI	CAGNNNCTG	2 cut(s)	478, 965
PsuI	RGATCY	1 cut(s)	7
PvuI	CGATCG	1 cut(s)	185
PvuII	CAGCTG	2 cut(s)	324, 797
RsaI	GTAC	3 cut(s)	14, 561, 789
RsaNI	GTAC	3 cut(s)	13, 560, 788
RseI	CAYNNNNRTG	1 cut(s)	116
Rsr2I	CGGWCCG	2 cut(s)	190, 195
RsrII	CGGWCCG	2 cut(s)	190, 195
SaqAI	TTAA	3 cut(s)	362, 450, 569
Sau3AI	GATC	3 cut(s)	7, 182, 307
Sau96I	GGNCC	4 cut(s)	190, 195, 338, 412
SchI	GAGTC	4 cut(s)	23, 194, 251, 838
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	1 cut(s)	704
SfaNI	GCATC	6 cut(s)	172, 504, 604, 609, 749, 952
SfcI	CTRYAG	1 cut(s)	856
SfoI	GGCGCC	1 cut(s)	96
SinI	GGWCC	4 cut(s)	190, 195, 338, 412
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	846
SmoI	CTYRAG	1 cut(s)	846
Sse9I	AATT	3 cut(s)	170, 487, 528
SspDI	GGCGCC	1 cut(s)	94
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	610
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	512, 842
TasI	AATT	3 cut(s)	170, 487, 528
TatI	WGTACW	1 cut(s)	559
TauI	GCSGC	7 cut(s)	25, 75, 154, 157, 243, 379, 407
TfiI	GAWTC	4 cut(s)	233, 481, 772, 929
Tru1I	TTAA	3 cut(s)	362, 450, 569
Tru9I	TTAA	3 cut(s)	362, 450, 569
TscAI	CASTG	3 cut(s)	147, 337, 760
TseFI	GTSAC	2 cut(s)	314, 326
TseI	GCWGC	4 cut(s)	544, 622, 797, 872
Tsp45I	GTSAC	2 cut(s)	314, 326
TspDTI	ATGAA	4 cut(s)	241, 476, 537, 945
TspGWI	ACGGA	3 cut(s)	30, 285, 515
TspRI	CASTG	3 cut(s)	147, 337, 760
Van91I	CCANNNNNTGG	1 cut(s)	710
VpaK11BI	GGWCC	4 cut(s)	190, 195, 338, 412
VspI	ATTAAT	1 cut(s)	450
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	1 cut(s)	121
XspI	CTAG	1 cut(s)	687
ZraI	GACGTC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.