Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012549.1

Orthogroup ID

OG0012416

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 679

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012549.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgttaacgatgagaaatggactgggtttgcatcccatgtgcttaccaggaatgatgcagcctgtgcagttgcctcatatggcattgggctttgacgaaggaagtaacaaagttccaaagtctagcagaggaatgagcccattttttggtagtgaagaaaactcaatgcaatcagcttataatatttccagtggatgcacaatcttgaatcagccaatggtcgtaccctcagctgcaaatgtccctactttggaagcctcatttgtttttgaaccatcgactcaagcttactacggacccttctttgctgccacatcttctaaggaactattattctgtgaaggtgagccgtcctcaaaatcagattccaatcggactgggataaactcttcatcagatgctgataaggtgtcctcaaagagacctgatgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

144

Amino Acids

15.41

Weight (kDa)

5.27

Isoelectric Point (pI)

60.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67110 AT5G67110 AT5G67110
fragaria_vesca	FvH4_2g34100
malus_domestica	MD15G1079800.v1.1
prunus_persica	Prupe.1G432800_v2.0.a1
pyrus_communis	pycom08g07960 pycom15g07430
rosa_chinensis	RchiOBHm_Chr6g0308251
rosa_laevigata	RLG00000010654
rosa_multiflora	Rmu_sc0012549.1_g000001 Rmu_ssc0000355.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160320
rosa_rugosa	Rorug06G0365400
rosa_samantha	Rh6AG474400 Rh6BG485100 Rh6CG490100 Rh6DG476500
rosa_wichuraiana	Rw6G041380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	146
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	146, 250
AgsI	TTSAA	2 cut(s)	208, 272
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	3 cut(s)	176, 233, 287
AluI	AGCT	3 cut(s)	176, 233, 287
Alw26I	GTCTC	1 cut(s)	415
AlwNI	CAGNNNCTG	1 cut(s)	401
ApeKI	GCWGC	3 cut(s)	58, 233, 308
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	140
BbvCI	CCTCAGC	1 cut(s)	229
BbvI	GCAGC	3 cut(s)	70, 220, 295
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	334
BciT130I	CCWGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	3 cut(s)	59, 234, 309
BlsI	GCNGC	3 cut(s)	60, 235, 310
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	48
BmrI	ACTGGG	2 cut(s)	32, 387
BmsI	GCATC	4 cut(s)	40, 45, 185, 388
BmuI	ACTGGG	2 cut(s)	32, 387
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
Bpu10I	CCTNAGC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 250
Bse1I	ACTGG	3 cut(s)	27, 189, 382
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	48
BseGI	GGATG	2 cut(s)	31, 200
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	146, 250
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	3 cut(s)	27, 189, 382
BseXI	GCAGC	3 cut(s)	70, 220, 295
BsgI	GTGCAG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	146, 250
BsmAI	GTCTC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	298
BspTNI	GGTCTC	1 cut(s)	415
BsrI	ACTGG	3 cut(s)	27, 189, 382
Bst2UI	CCWGG	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	394
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	229, 321
BstF5I	GGATG	2 cut(s)	31, 200
BstMAI	GTCTC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstV1I	GCAGC	3 cut(s)	70, 220, 295
BtsCI	GGATG	2 cut(s)	31, 200
BtsIMutI	CAGTG	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	9 cut(s)	61, 90, 138, 176, 214, 233, 257, 287, 349
CviKI_1	RGCY	9 cut(s)	61, 90, 138, 176, 214, 233, 257, 287, 349
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	229, 321
Eam1104I	CTCTTC	1 cut(s)	394
EarI	CTCTTC	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	140
Eco31I	GGTCTC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	1 cut(s)	40
FaiI	YATR	5 cut(s)	38, 78, 80, 180, 433
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	59, 234, 309
FokI	GGATG	2 cut(s)	18, 207
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	3 cut(s)	59, 234, 309
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	3 cut(s)	59, 234, 309
Hin1II	CATG	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	3 cut(s)	208, 280, 365
HpaI	GTTAAC	1 cut(s)	6
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	364, 375, 397
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	3 cut(s)	92, 310, 335
HpyCH4V	TGCA	6 cut(s)	31, 58, 67, 169, 198, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	2 cut(s)	229, 321
Hsp92II	CATG	1 cut(s)	40
KspAI	GTTAAC	1 cut(s)	6
LpnPI	CCDG	6 cut(s)	8, 33, 60, 75, 202, 363
Lsp1109I	GCAGC	3 cut(s)	70, 220, 295
LweI	GCATC	4 cut(s)	40, 45, 185, 388
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	104
MboII	GAAGA	3 cut(s)	167, 309, 381
MhlI	GDGCHC	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	274
MnlI	CCTC	6 cut(s)	84, 122, 238, 268, 364, 424
MseI	TTAA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeI	CATATG	1 cut(s)	78
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	208, 365
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	60, 235, 310
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	3 cut(s)	59, 234, 309
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	6 cut(s)	178, 235, 289, 346, 411, 427
SfaNI	GCATC	4 cut(s)	40, 45, 185, 388
SinI	GGWCC	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	46
TaqI	TCGA	1 cut(s)	278
TfiI	GAWTC	2 cut(s)	208, 365
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	3 cut(s)	58, 233, 308
TspDTI	ATGAA	1 cut(s)	381
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	296
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.