Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005882

Physical Location & Seq

Genomic Coordinates Reverse (-)

23111 .. 26329

Gene Structure 3219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3219 bp

ATGCTTGGGGATGAAAAAGAGGGAACATCTGCAATACCCGGATTTAATCAGATACAATTTGAAGGGTTTTATCGGTTTATTGATCAGGGTTTAATAGAAGAACTTGCTAAGTTTCCAAAAATTGAAGATATAGATCACGAAATTGAATTTCAATTATTTGTGGAAACATATCAATTGGTAGAACCTCTGATAAAAGAACGAGATGCTGTCTATGAATCACTTACATATTCTTCTGAATTATATGTATCCGCGGGATTAATTTGGAAAACCAGTAGGAATATGCAAGAACAAAGAATTTTTATTGGAAACATTCCTTTAATGAATTCCCTTGGAACTTCTATAGTAAACGGAATTTACCGAATTGTGATCAATCAAATATTGCAAAGTCCCGGTATCTATTACCAGTCAGAATTGGATCATAATGGGATTTCGGTCTATACCGGCACCATAATATCAGATTGGGGAGGCAGGTTAGAATTAGAGATTGATAAAAAAGCAAGAATATGGGCTCGGGTGAGTAGGAAACAAAAAATATCTATTCTAGTTCTATCATCAGCTATGGGTTTGAATCTACGAGAAATTCTAGAGAATGTTTGCTACCCTGAAATTTTCTTATCTTTCTTGACCGATAAGGAGAAAAAAAAAATAGGATCAAAAGAAAATGCTATTTTGGAGTTTTATCAACAATTTTCTTGTGTAGGTGGGGATCCTATATTTTCTGAATCCTTATGTAAGGAATTACAAAAAAAATTCTTTCACCAAAGGTGTGAATTAGGAAGGATTGGTCGCCGAAATATTAATTGGAGACTGAATCTTAATATACCTCAGAACAATATATTTTTGTTACCACGAGATGTGTTAGCAGCTGCCGATCATTTGATTGGGATGAAATTTGGAATGGGTACACTTGATGATATGAATCATTTGAAAAATAAACGTATTCGCTCTGTAGCGGATCTTTTACAAGACCAGCTCGGGTTGGCTCTGGCTCGTTTAGAAAATGTAGTTAAGGGAACTATCTCCGGAGCAATTAGGCATAAATTGATACCTACTCCTCAGAATTTGGTAACTTCAACTCCGTTAACAACTACTTATGAATCCTTTTTCGGATTACACCCATTATCTCAAGTTTTGGATCGAACAAATCCATTGACACAAATCGTTCATGGGAGAAAATTGAGTTATTTGGGCCCTGGCGGATTAACAGGGCGAACTGCTAATTTTCGGATACGAGATATCCATCCTAGTCACTATGGGCGTATTTGTCCCATTGACACGTCTGAAGGAATCAATGTTGGACTTATTGGATCTTTATCAATTCATGCCAGGATTGGTGATTGGGGGTCGTTAGAAAGTCCATTTTATGAACTCTTTGAGAAATCAAAAAAAGCACGGATACGGATGCTTTTTTTATCACCAAGTCAAGATGAATATTATATGATAGCGGCAGGAAATTCTTTGGCTCTTAATCGGGGCATTCAAGAAGAACAGGCTGTTCCAGCTCGATACCGCCAAGAATTTTTGACTATCGCATGGGAAGAGGTTCATCTTCGAAGCATTTTCCCTTTCCAATATTTTTCCATTGGAGCTTCTCTAATTCCTTTTATCGAACATAATGATGCGAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCACTTTCTCGGTCCGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTTTAGATTCAGGGGTTCCCGCTATAGCCGAACACGAGGGAAAAATCCTTTATACTGACACTGAGAAGATCGTTTTTTCGGGCAATGGTGATACTCTAAGCATTCCATTAATTATGTATCAACGCTCAAACAAAAATACTTGTATGCATCAAAAACCTCAGGTTCGTCGGGGTAAATGCATTAAAAAGGGACAAATTTTAGCGGATGGTGCTGCTACAGTTGGTGGGGAACTCGCTTTGGGGAAAAATATATTAGTGGCTTATATGCCATGGGAAGGATACAATTTTGAAGATGCGGTACTCATTAGTGAGTGTCTAGTATATGGTGATATTTATACTTCTTTCCACATACGGAAATATGAAATTCAGACGCATGTGACAACCCAAGGTCCTGAAAGGATCACTAAAGAAATACCGCATCTAGAAGGTCGTTTACTCCGAAATTTAGACAAAAATGGAATTGTGATGCTAGGATCGTGGGTTGAAACAGGTGATATTTTAGTAGGTAAATTAACACCTCAAGTGGCGAAAGAATCCTCCTATGCTCCGGAAGATAGGTTATTACGAGCTATACTTGGCATTCAGGTATCGACTTCAAAAGAAACTTGTTTAAAATTGCCTATAGGTGGTAGAGGTCGAGTTATTGATGTGAGGTGGGTTCAGAAAAAGGGTGGTTCAAGTTATAACCCAGAAATAATTCGTGTATATATTTCACAGAAACGTGAAATAAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAAGGTATCATTTCAAAAATTTTGCCTAGACAGGATATGCCTTATTTGCAAGACGGGAGACCCGTGGATATGGTCTTCAACCCATTAGGAGTACCCTCACGCATGAATGTAGGACAGATATTTGAATGCTCGCTTGGGTTAGCGGGAAGTCTGCTAGATAGACATTATCGAATAGCCCCTTTTGATGAGAGATATGAACAAGAGGCTTCGAGAAAACTGGTGTTTTCAGAATTATATGAAGCCAGTAAGCAAACAGCGAATCCATGGGTATTTGAACCCGAGTATCCAGGAAAAAGCCGCATTTTTGATGGAAGAACAGGAGATCCTTTTGAACAGCCTGTGATAATAGGAAAGCCCTATATCTTGAAATTAATTCATCAGGTTGATGATAAAATACACGGACGTTCTAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGCCGTTCCAAGCAGGGGGGGCAGCGGGTAGGCGAAATGGAGGTTTGGGCTCTGGAGGGGTTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGCCAAGAAGTACTTGGTACCACTATCATTGGAGGAACAATACCTAAACCAGAAGATGCTCCGGAATCTTTTCGATTACTTGTTCGAGAACTACGATCTTTGGCTCTGGAACTGAATCATTTCCTTGTATCTGAGAAGAATTTCCAGATTAATAGGAAGGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006354 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1072

Amino Acids

121.06

Weight (kDa)

8.68

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_2	PF04561	128 - 315	1.1e-54	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	376 - 444	6.9e-24	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_6	PF00562	583 - 981	7.3e-104	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	983 - 1058	3.3e-22	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00190
malus_domestica	MD01G1093300.v1.1 MD16G1169300.v1.1
pyrus_communis	pycom12397g00320 pycom14g07090
rosa_chinensis	RchiOBHm_CPg0502401
rosa_laevigata	RLG00000000047 RLG00000000087 RLG00000000116 RLG00000000175 RLG00000000231 RLG00000000246 RLG00000000284 RLG00000000299 RLG00000000300 RLG00000000314 RLG00000000318 RLG00000000340
rosa_multiflora	Rmu_sc0002986.1_g000010 Rmu_sc0008812.1_g000013 Rmu_sc0011830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00119070
rosa_rugosa	Rorug02G0490800 RorugMtG0001900
rosa_samantha	Rh2AG293900 Rh2AG294000 Rh2DG317800 Rh2DG317900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2403, 3030
Acc36I	ACCTGC	1 cut(s)	459
Acc65I	GGTACC	1 cut(s)	3068
AccB1I	GGYRCC	2 cut(s)	443, 3068
AccII	CGCG	1 cut(s)	251
AccIII	TCCGGA	3 cut(s)	1022, 2266, 3112
AcuI	CTGAAG	1 cut(s)	1302
AfaI	GTAC	5 cut(s)	904, 2019, 2577, 3063, 3070
AfiI	CCNNNNNNNGG	4 cut(s)	1994, 2345, 2930, 2946
AflIII	ACRYGT	1 cut(s)	1275
AjiI	CACGTC	1 cut(s)	1278
AjnI	CCWGG	3 cut(s)	1192, 1325, 2770
AjuI	GAANNNNNNNTTGG	4 cut(s)	784, 816, 2601, 2633
AloI	GAACNNNNNNTCC	2 cut(s)	2791, 2823
AluBI	AGCT	9 cut(s)	557, 866, 973, 1502, 1589, 1631, 2288, 2468, 3050
AluI	AGCT	9 cut(s)	557, 866, 973, 1502, 1589, 1631, 2288, 2468, 3050
Alw21I	GWGCWC	1 cut(s)	3052
Alw26I	GTCTC	2 cut(s)	799, 2536
Ama87I	CYCGRG	3 cut(s)	510, 974, 2762
Aor13HI	TCCGGA	3 cut(s)	1022, 2266, 3112
AoxI	GGCC	2 cut(s)	1189, 2932
ApaI	GGGCCC	1 cut(s)	1193
ApeKI	GCWGC	4 cut(s)	863, 866, 1931, 2953
AseI	ATTAAT	5 cut(s)	257, 798, 1829, 2855, 3201
Asp700I	GAANNNNTTC	5 cut(s)	1542, 2415, 3120, 3170, 3191
Asp718I	GGTACC	1 cut(s)	3068
AspS9I	GGNCC	4 cut(s)	1189, 1190, 1677, 2108
AsuC2I	CCSGG	2 cut(s)	39, 390
AsuHPI	GGTGA	8 cut(s)	526, 749, 1346, 1407, 1820, 2057, 2222, 2468
AsuII	TTCGAA	1 cut(s)	1552
AvaI	CYCGRG	3 cut(s)	510, 974, 2762
AvaII	GGWCC	2 cut(s)	1677, 2108
AxyI	CCTNAGG	1 cut(s)	1878
BaeGI	GKGCMC	1 cut(s)	1193
BaeI	ACNNNNGTAYC	2 cut(s)	2750, 2783
BamHI	GGATCC	1 cut(s)	706
BanI	GGYRCC	2 cut(s)	443, 3068
BanII	GRGCYC	4 cut(s)	511, 1193, 2983, 3052
BarI	GAAGNNNNNNTAC	4 cut(s)	2001, 2033, 2136, 2168
BauI	CACGAG	2 cut(s)	849, 1754
BbsI	GAAGAC	2 cut(s)	2479, 2551
Bbv12I	GWGCWC	1 cut(s)	3052
BbvI	GCAGC	4 cut(s)	853, 875, 1918, 2965
BccI	CCATC	3 cut(s)	1248, 1919, 2786
BceAI	ACGGC	1 cut(s)	2919
BciT130I	CCWGG	3 cut(s)	1194, 1327, 2772
BciVI	GTATCC	5 cut(s)	256, 1221, 1389, 1991, 2778
BclI	TGATCA	3 cut(s)	82, 366, 3037
BcnI	CCSGG	2 cut(s)	39, 390
BcoDI	GTCTC	2 cut(s)	799, 2536
BfaI	CTAG	9 cut(s)	542, 584, 1245, 2036, 2141, 2189, 2511, 2639, 2892
BfmI	CTRYAG	5 cut(s)	339, 948, 1743, 1935, 2340
BfuAI	ACCTGC	1 cut(s)	459
BfuI	GTATCC	5 cut(s)	256, 1221, 1389, 1991, 2778
BisI	GCNGC	6 cut(s)	864, 867, 1446, 1932, 2782, 2954
BlsI	GCNGC	6 cut(s)	865, 868, 1447, 1933, 2783, 2955
BmcAI	AGTACT	1 cut(s)	3063
Bme1390I	CCNGG	5 cut(s)	39, 390, 1194, 1327, 2772
Bme18I	GGWCC	2 cut(s)	1677, 2108
BmeT110I	CYCGRG	3 cut(s)	510, 974, 2762
BmgBI	CACGTC	1 cut(s)	1278
BmgT120I	GGNCC	4 cut(s)	1189, 1190, 1677, 2108
BmiI	GGNNCC	5 cut(s)	445, 708, 1191, 1737, 3070
BmrFI	CCNGG	5 cut(s)	39, 390, 1194, 1327, 2772
BmrI	ACTGGG	1 cut(s)	1710
BmsI	GCATC	9 cut(s)	193, 1392, 1609, 1876, 2002, 2146, 2175, 3009, 3097
BmuI	ACTGGG	1 cut(s)	1710
BpiI	GAAGAC	2 cut(s)	2479, 2551
BpmI	CTGGAG	1 cut(s)	3005
Bpu14I	TTCGAA	1 cut(s)	1552
BpuEI	CTTGAG	2 cut(s)	1110, 2223
BpuMI	CCSGG	2 cut(s)	39, 390
BsaBI	GATNNNNATC	5 cut(s)	132, 918, 1239, 1312, 1623
BsaI	GGTCTC	1 cut(s)	2536
BsaJI	CCNNGG	7 cut(s)	249, 328, 1192, 1988, 2104, 2547, 2747
BsaWI	WCCGGW	3 cut(s)	1022, 2266, 3112
BsaXI	ACNNNNNCTCC	2 cut(s)	1060, 1090
Bsc4I	CCNNNNNNNGG	4 cut(s)	1994, 2345, 2930, 2946
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	5 cut(s)	270, 403, 1705, 2706, 2727
Bse21I	CCTNAGG	1 cut(s)	1878
Bse3DI	GCAATG	1 cut(s)	1810
Bse8I	GATNNNNATC	5 cut(s)	132, 918, 1239, 1312, 1623
BseAI	TCCGGA	3 cut(s)	1022, 2266, 3112
BseBI	CCWGG	3 cut(s)	1194, 1327, 2772
BseDI	CCNNGG	7 cut(s)	249, 328, 1192, 1988, 2104, 2547, 2747
BseGI	GGATG	5 cut(s)	16, 891, 1240, 1407, 1930
BseJI	GATNNNNATC	5 cut(s)	132, 918, 1239, 1312, 1623
BseLI	CCNNNNNNNGG	4 cut(s)	1994, 2345, 2930, 2946
BseMI	GCAATG	1 cut(s)	1810
BseMII	CTCAG	5 cut(s)	839, 1070, 1773, 1892, 3174
BseNI	ACTGG	5 cut(s)	270, 403, 1705, 2706, 2727
BseRI	GAGGAG	1 cut(s)	1044
BseSI	GKGCMC	1 cut(s)	1193
BseXI	GCAGC	4 cut(s)	853, 875, 1918, 2965
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	2 cut(s)	1191, 2934
BshNI	GGYRCC	2 cut(s)	443, 3068
BsiHKAI	GWGCWC	1 cut(s)	3052
BsiHKCI	CYCGRG	3 cut(s)	510, 974, 2762
BsiSI	CCGG	6 cut(s)	39, 390, 441, 1023, 2267, 3113
BslFI	GGGAC	3 cut(s)	372, 1251, 1923
BslI	CCNNNNNNNGG	4 cut(s)	1994, 2345, 2930, 2946
BsmAI	GTCTC	2 cut(s)	799, 2536
BsmFI	GGGAC	3 cut(s)	372, 1251, 1923
BsmI	GAATGC	4 cut(s)	1476, 1821, 2298, 2615
BsnI	GGCC	2 cut(s)	1191, 2934
Bso31I	GGTCTC	1 cut(s)	2536
BsoBI	CYCGRG	3 cut(s)	510, 974, 2762
Bsp119I	TTCGAA	1 cut(s)	1552
Bsp120I	GGGCCC	1 cut(s)	1189
Bsp1286I	GDGCHC	4 cut(s)	511, 1193, 2983, 3052
Bsp13I	TCCGGA	3 cut(s)	1022, 2266, 3112
Bsp19I	CCATGG	2 cut(s)	1988, 2747
BspANI	GGCC	2 cut(s)	1191, 2934
BspCNI	CTCAG	5 cut(s)	838, 1069, 1774, 1891, 3175
BspEI	TCCGGA	3 cut(s)	1022, 2266, 3112
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	5 cut(s)	445, 708, 1191, 1737, 3070
BspMI	ACCTGC	1 cut(s)	459
BspT104I	TTCGAA	1 cut(s)	1552
BspT107I	GGYRCC	2 cut(s)	443, 3068
BspTNI	GGTCTC	1 cut(s)	2536
BsrDI	GCAATG	1 cut(s)	1810
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	5 cut(s)	270, 403, 1705, 2706, 2727
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	7 cut(s)	249, 328, 1192, 1988, 2104, 2547, 2747
BssSI	CACGAG	2 cut(s)	849, 1754
BssT1I	CCWWGG	4 cut(s)	328, 1988, 2104, 2747
Bst2BI	CACGAG	2 cut(s)	849, 1754
Bst2UI	CCWGG	3 cut(s)	1194, 1327, 2772
Bst4CI	ACNGT	1 cut(s)	1939
Bst6I	CTCTTC	1 cut(s)	1533
BstBI	TTCGAA	1 cut(s)	1552
BstC8I	GCNNGC	2 cut(s)	2615, 3052
BstDEI	CTNAG	8 cut(s)	108, 825, 1056, 1782, 1817, 1878, 2927, 3183
BstDSI	CCRYGG	4 cut(s)	249, 1988, 2547, 2747
BstF5I	GGATG	5 cut(s)	16, 891, 1240, 1407, 1930
BstFNI	CGCG	1 cut(s)	251
BstMAI	GTCTC	2 cut(s)	799, 2536
BstMWI	GCNNNNNNNGC	5 cut(s)	1499, 1628, 1928, 2530, 2950
BstNI	CCWGG	3 cut(s)	1194, 1327, 2772
BstNSI	RCATGY	1 cut(s)	2096
BstSCI	CCNGG	5 cut(s)	37, 388, 1192, 1325, 2770
BstSFI	CTRYAG	5 cut(s)	339, 948, 1743, 1935, 2340
BstSLI	GKGCMC	1 cut(s)	1193
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	4 cut(s)	853, 875, 1918, 2965
BstV2I	GAAGAC	2 cut(s)	2479, 2551
BstX2I	RGATCY	4 cut(s)	706, 955, 1307, 2806
BstYI	RGATCY	4 cut(s)	706, 955, 1307, 2806
Bsu36I	CCTNAGG	1 cut(s)	1878
BsuI	GTATCC	5 cut(s)	256, 1221, 1389, 1991, 2778
BsuRI	GGCC	2 cut(s)	1191, 2934
BtgI	CCRYGG	4 cut(s)	249, 1988, 2547, 2747
BtrI	CACGTC	1 cut(s)	1278
BtsCI	GGATG	5 cut(s)	16, 891, 1240, 1407, 1930
BtsIMutI	CAGTG	1 cut(s)	1779
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	2615, 3052
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	4 cut(s)	1189, 1190, 1677, 2108
Cfr42I	CCGCGG	1 cut(s)	252
CpoI	CGGWCCG	1 cut(s)	1677
CseI	GACGC	1 cut(s)	2098
Csp6I	GTAC	5 cut(s)	903, 2018, 2576, 3062, 3069
CspCI	CAANNNNNGTGG	2 cut(s)	3061, 3096
CspI	CGGWCCG	1 cut(s)	1677
CviAII	CATG	8 cut(s)	1166, 1322, 1533, 1989, 2093, 2477, 2587, 2748
CviQI	GTAC	5 cut(s)	903, 2018, 2576, 3062, 3069
DdeI	CTNAG	8 cut(s)	108, 825, 1056, 1782, 1817, 1878, 2927, 3183
DraI	TTTAAA	1 cut(s)	2331
Eam1104I	CTCTTC	1 cut(s)	1533
EarI	CTCTTC	1 cut(s)	1533
EciI	GGCGGA	1 cut(s)	1212
Ecl136II	GAGCTC	1 cut(s)	3050
Eco130I	CCWWGG	4 cut(s)	328, 1988, 2104, 2747
Eco24I	GRGCYC	4 cut(s)	511, 1193, 2983, 3052
Eco31I	GGTCTC	1 cut(s)	2536
Eco32I	GATATC	1 cut(s)	1237
Eco47I	GGWCC	2 cut(s)	1677, 2108
Eco53kI	GAGCTC	1 cut(s)	3050
Eco57I	CTGAAG	1 cut(s)	1302
Eco81I	CCTNAGG	1 cut(s)	1878
Eco88I	CYCGRG	3 cut(s)	510, 974, 2762
EcoICRI	GAGCTC	1 cut(s)	3050
EcoO109I	RGGNCCY	2 cut(s)	1190, 2108
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	3 cut(s)	1192, 1325, 2770
EcoRV	GATATC	1 cut(s)	1237
EcoT14I	CCWWGG	4 cut(s)	328, 1988, 2104, 2747
EcoT22I	ATGCAT	2 cut(s)	1869, 1901
EcoT38I	GRGCYC	4 cut(s)	511, 1193, 2983, 3052
ErhI	CCWWGG	4 cut(s)	328, 1988, 2104, 2747
FaeI	CATG	8 cut(s)	1169, 1325, 1536, 1992, 2096, 2480, 2590, 2751
FalI	AAGNNNNNCTT	4 cut(s)	3006, 3038, 3048, 3080
FaqI	GGGAC	3 cut(s)	372, 1251, 1923
FatI	CATG	8 cut(s)	1165, 1321, 1532, 1988, 2092, 2476, 2586, 2747
FauI	CCCGC	4 cut(s)	244, 1747, 2620, 2949
FbaI	TGATCA	3 cut(s)	82, 366, 3037
Fnu4HI	GCNGC	6 cut(s)	864, 867, 1446, 1932, 2782, 2954
FokI	GGATG	5 cut(s)	23, 898, 1227, 1414, 1937
FriOI	GRGCYC	4 cut(s)	511, 1193, 2983, 3052
Fsp4HI	GCNGC	6 cut(s)	864, 867, 1446, 1932, 2782, 2954
FspBI	CTAG	9 cut(s)	542, 584, 1245, 2036, 2141, 2189, 2511, 2639, 2892
GluI	GCNGC	6 cut(s)	864, 867, 1446, 1932, 2782, 2954
GsuI	CTGGAG	1 cut(s)	3005
HaeIII	GGCC	2 cut(s)	1191, 2934
HapII	CCGG	6 cut(s)	39, 390, 441, 1023, 2267, 3113
HgaI	GACGC	1 cut(s)	2098
Hin1II	CATG	8 cut(s)	1169, 1325, 1536, 1992, 2096, 2480, 2590, 2751
HincII	GTYRAC	1 cut(s)	1083
HindII	GTYRAC	1 cut(s)	1083
HpaI	GTTAAC	1 cut(s)	1083
HpaII	CCGG	6 cut(s)	39, 390, 441, 1023, 2267, 3113
HphI	GGTGA	8 cut(s)	526, 749, 1346, 1407, 1820, 2057, 2222, 2468
Hpy166II	GTNNAC	5 cut(s)	346, 905, 1083, 2153, 2897
Hpy8I	GTNNAC	5 cut(s)	346, 905, 1083, 2153, 2897
Hpy99I	CGWCG	1 cut(s)	1890
HpyAV	CCTTC	6 cut(s)	56, 771, 1277, 1988, 2138, 3202
HpyCH4III	ACNGT	1 cut(s)	1939
HpyCH4IV	ACGT	5 cut(s)	937, 1277, 1654, 2440, 2887
HpyCH4V	TGCA	9 cut(s)	32, 283, 382, 1651, 1689, 1867, 1899, 2533, 2906
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1499, 1628, 1928, 2530, 2950
HpyF3I	CTNAG	8 cut(s)	108, 825, 1056, 1782, 1817, 1878, 2927, 3183
HpySE526I	ACGT	5 cut(s)	937, 1277, 1654, 2440, 2887
Hsp92II	CATG	8 cut(s)	1169, 1325, 1536, 1992, 2096, 2480, 2590, 2751
Kpn2I	TCCGGA	3 cut(s)	1022, 2266, 3112
KpnI	GGTACC	1 cut(s)	3072
Ksp22I	TGATCA	3 cut(s)	82, 366, 3037
KspAI	GTTAAC	1 cut(s)	1083
KspI	CCGCGG	1 cut(s)	252
LmnI	GCTCC	4 cut(s)	1025, 1586, 2269, 3115
Lsp1109I	GCAGC	4 cut(s)	853, 875, 1918, 2965
LweI	GCATC	9 cut(s)	193, 1392, 1609, 1876, 2002, 2146, 2175, 3009, 3097
MaeI	CTAG	9 cut(s)	542, 584, 1245, 2036, 2141, 2189, 2511, 2639, 2892
MaeII	ACGT	5 cut(s)	937, 1277, 1654, 2440, 2887
MaeIII	GTNAC	5 cut(s)	843, 1066, 1247, 2095, 2911
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	4 cut(s)	706, 955, 1307, 2806
MhlI	GDGCHC	4 cut(s)	511, 1193, 2983, 3052
MmeI	TCCRAC	3 cut(s)	1276, 1675, 1686
Mph1103I	ATGCAT	2 cut(s)	1869, 1901
MroI	TCCGGA	3 cut(s)	1022, 2266, 3112
MroXI	GAANNNNTTC	5 cut(s)	1542, 2415, 3120, 3170, 3191
MslI	CAYNNNNRTG	1 cut(s)	1617
MspA1I	CMGCKG	3 cut(s)	251, 866, 2956
MspI	CCGG	6 cut(s)	39, 390, 441, 1023, 2267, 3113
MspR9I	CCNGG	5 cut(s)	39, 390, 1194, 1327, 2772
MunI	CAATTG	1 cut(s)	173
Mva1269I	GAATGC	4 cut(s)	1476, 1821, 2298, 2615
MvaI	CCWGG	3 cut(s)	1194, 1327, 2772
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	5 cut(s)	1499, 1628, 1928, 2530, 2950
NciI	CCSGG	2 cut(s)	39, 390
NcoI	CCATGG	2 cut(s)	1988, 2747
NlaIII	CATG	8 cut(s)	1169, 1325, 1536, 1992, 2096, 2480, 2590, 2751
NlaIV	GGNNCC	5 cut(s)	445, 708, 1191, 1737, 3070
NmuCI	GTSAC	2 cut(s)	1247, 2095
NsiI	ATGCAT	2 cut(s)	1869, 1901
NspI	RCATGY	1 cut(s)	2096
NspV	TTCGAA	1 cut(s)	1552
PcsI	WCGNNNNNNNCGW	3 cut(s)	2155, 2544, 3142
PctI	GAATGC	4 cut(s)	1476, 1821, 2298, 2615
PdmI	GAANNNNTTC	5 cut(s)	1542, 2415, 3120, 3170, 3191
PfoI	TCCNGGA	1 cut(s)	2770
PkrI	GCNGC	6 cut(s)	865, 868, 1447, 1933, 2783, 2955
PpuMI	RGGWCCY	1 cut(s)	2108
PshBI	ATTAAT	5 cut(s)	257, 798, 1829, 2855, 3201
PsiI	TTATAA	2 cut(s)	2403, 3030
Psp124BI	GAGCTC	1 cut(s)	3052
Psp5II	RGGWCCY	1 cut(s)	2108
Psp6I	CCWGG	3 cut(s)	1192, 1325, 2770
PspGI	CCWGG	3 cut(s)	1192, 1325, 2770
PspN4I	GGNNCC	5 cut(s)	445, 708, 1191, 1737, 3070
PspOMI	GGGCCC	1 cut(s)	1189
PspPI	GGNCC	4 cut(s)	1189, 1190, 1677, 2108
PspPPI	RGGWCCY	1 cut(s)	2108
PsuI	RGATCY	4 cut(s)	706, 955, 1307, 2806
PvuII	CAGCTG	1 cut(s)	866
RsaI	GTAC	5 cut(s)	904, 2019, 2577, 3063, 3070
RsaNI	GTAC	5 cut(s)	903, 2018, 2576, 3062, 3069
RseI	CAYNNNNRTG	1 cut(s)	1617
Rsr2I	CGGWCCG	1 cut(s)	1677
RsrII	CGGWCCG	1 cut(s)	1677
SacI	GAGCTC	1 cut(s)	3052
SacII	CCGCGG	1 cut(s)	252
SatI	GCNGC	6 cut(s)	864, 867, 1446, 1932, 2782, 2954
Sau96I	GGNCC	4 cut(s)	1189, 1190, 1677, 2108
ScaI	AGTACT	1 cut(s)	3063
ScrFI	CCNGG	5 cut(s)	39, 390, 1194, 1327, 2772
SduI	GDGCHC	4 cut(s)	511, 1193, 2983, 3052
SfaNI	GCATC	9 cut(s)	193, 1392, 1609, 1876, 2002, 2146, 2175, 3009, 3097
SfcI	CTRYAG	5 cut(s)	339, 948, 1743, 1935, 2340
Sfr303I	CCGCGG	1 cut(s)	252
SfuI	TTCGAA	1 cut(s)	1552
SgrBI	CCGCGG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	1677, 2108
SmiMI	CAYNNNNRTG	1 cut(s)	1617
SmlI	CTYRAG	2 cut(s)	1125, 2238
SmoI	CTYRAG	2 cut(s)	1125, 2238
SspI	AATATT	4 cut(s)	378, 796, 1433, 1574
SspMI	CTAG	9 cut(s)	542, 584, 1245, 2036, 2141, 2189, 2511, 2639, 2892
SstI	GAGCTC	1 cut(s)	3052
StyD4I	CCNGG	5 cut(s)	37, 388, 1192, 1325, 2770
StyI	CCWWGG	4 cut(s)	328, 1988, 2104, 2747
TaaI	ACNGT	1 cut(s)	1939
TaiI	ACGT	5 cut(s)	940, 1280, 1657, 2443, 2890
TaqII	GACCGA	3 cut(s)	421, 641, 1665
TatI	WGTACW	1 cut(s)	3061
TauI	GCSGC	2 cut(s)	1448, 2784
TscAI	CASTG	1 cut(s)	1786
TseFI	GTSAC	2 cut(s)	1247, 2095
TseI	GCWGC	4 cut(s)	863, 866, 1931, 2953
Tsp45I	GTSAC	2 cut(s)	1247, 2095
TspGWI	ACGGA	6 cut(s)	363, 1068, 1408, 1414, 2086, 2898
TspRI	CASTG	1 cut(s)	1786
VpaK11BI	GGWCC	2 cut(s)	1677, 2108
VspI	ATTAAT	5 cut(s)	257, 798, 1829, 2855, 3201
XbaI	TCTAGA	2 cut(s)	583, 2140
XceI	RCATGY	1 cut(s)	2096
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3062
XmnI	GAANNNNTTC	5 cut(s)	1542, 2415, 3120, 3170, 3191
XspI	CTAG	9 cut(s)	542, 584, 1245, 2036, 2141, 2189, 2511, 2639, 2892
ZrmI	AGTACT	1 cut(s)	3063
Zsp2I	ATGCAT	2 cut(s)	1869, 1901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.