Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0005882

Physical Location & Seq

Genomic Coordinates Forward (+)

285495 .. 288708

Gene Structure 3214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3063 bp

ATGCTTGGAGGTGGAAATGAGGCAATATCTACAATACCTGGATTTAATCAGATACAATTTGAAGGGTTTTGTAGGTTCATTGATCAGGGCTTAACAGAGGAACTTTATAAGTTTCCAAAAATTGAAGATACAGATCAAGAAATTGAATTTCAATTATTTGTGGAAACATATCAATTGGTAGAACCGTTGATAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTTCGGAATTATATGTATCCGCGGGATTAATTTGGAAAAACAGTAGGGATATGCAAGAACAAACAATTTTTATTGGAAATATTCCTCTAATGAATTCCCTGGGAACTTCTATAGTAAACGGAATATACAGAATTGTGATCAATCAAATATTGCAAAGCCCTGGTATCTATTACCGGTCAGAACTGGACCATAACGGAATTTCAGTCTATACCGGCATCATAATATCAGATTGGGGAGGGAGATTAGAATTAGAGATTGATAGAAAAGCAAGGATATGGGCTCGTGTCAGTAGGAAACAAAAAATATCTATTCTAGTTCTATCATCAGCTATGGGTTCGAATCTAAGAGAAATTCTAGAGAATGCTCGCTACCCCGAAATTTTCTTGTCTTTCCTGAATGATAAGGAGAAAAAAAAAATCGGGTCAAAAGAAAATGCCATTTTGGAGTTTTATCAACAATTTGCTTGTGTAGGCGGAGATCCGGTAGTTTCTGAATCCTTATGTAAGGAATTACAAAAAAAATTCTTTCAACAAAGATGTGAGTTAGGAAGGATTGGTCGACGAAATATGAACCGAAGGCTGAATCTTGATATCCCTCAGAACAACACATTTTTGTTACCGCGAGATATATTGGCAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGACGATATGAATCATTTGAAAAATAAACGTATTCGGTCTGTCGCGGATCTTTTACAAGACCAATTCGGATTGGCCCTGGTTCGTTTAGAAAATATGGTTAGAGGGACTATATGCGGAGCAATTAAGCATAAATTGATACCCACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACCACTTATGAATCTTTTTTTGGATTACACCCATTATCTCAAGTTTTGGATCAAACTAATCCATTGACCCAAATAGTTCATGGGAGAAAATCGAGTTATCTGGGCCCTGGAGGATTGACAGGGCGAACTGCTAGTTTTCGGATACGAGATATTCACCCCAGTCACTACGGACGCATTTGCCCCATTGACACCTCTGAAGGAATCAATGTTGGACTTATTGGATCCTTAGCAATTCATGCGAAGATTGGTTATTGGGGGTCTCTAGAAAGTCCGTTTTATGAAATTTCTGAGAGATCAAAAAAAGTACGGATGCTTTATTTATCACCAAGTAAAGATGAATACTATATGATAGCGGCAGGAAATTCTTTGGCCTTGAATCGAGGTATTCAGGAAGAACAGGTTGTTCCAGCTCGATACCGTCAAGAATTCCTGACTGTTGAATGGGAACAGGTTCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTGATTCCTTTTATTGAGCATAATGATGCGAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCGCTCTCTCGGTCTGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTTTAGATTCCGGGGTTCCCGCTATAGCCGAACATGAGGGAAAGATCATTTATACGGATACTGACAAGATAATTTTATCGGGCAATGGGGATACTCTAAACATTCCATTAGTTATATACCAACGTTCCAACAAAAATACGTGTATGCACCAAAAACCCCAGGTTCAGCGAGCGGATGGTGCTGCTACGGTTGGTGGCGAACTCGCTTTGGGAAAAAATACTCATGTGACAAGCAACGGTCCTGAAAGAATTACTAACGAAATACCACATCTAGAAGCCCATTTACTCCGCAATTTAGACAAAAATGGAATTGTGAGGCTGGGATCCTGGGTAAAGACGGGTGATATTTTAGTAGGTAAATTAACGCCGCAGATGGCGAAAGAATCGTCATATGCTCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAGGAAACTTGTCTAAAATTACCGATAGGTGGTAGAGGTCGAGTTATTGATGTAAGATGGATCCAGAAAAAGGGAGGTTCTAGTTATAATCCAGAAACGATTCGTGTATATATTTCACAAAAACGTGAAATCAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCGTTTCAAAAATTTTACCTAGACAAGATATGCCTTATTTGCAAGATGGAAGACCTGTTGATATGGTCTTCAACCCATTAGGAGTTCCTTCGCGAATGAATGTAGGACAGATATTTGAATGCTCACTCGGGTTAGCGGGAGGTCTGCTAGATAGACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCAAGAAAACTGGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCGAATCCATGGGTATTTGAACCTGAGTATCCGGGAAAAAGCAGAATATTTGATGGAAGAACGGGGGATCCTTTTGAACAACCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACATGGACGTTCTAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGCAAGGGGGACAACGGGTAGGAGAAATGGAAGTTTGGGCTCTAGAGGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCGGATCATATTAGAGCTCGTCAAGAAGTACTTGGTACTACAATCATTGGAGGGACAATACCTCAACCCGCGGATGCTCCCGAATCTTTTCGATTGCTCGTGCGAGAACTACGATCTTTGGCTCTGGAACTGAACCATTTCCTTGTATCTGAGAAGAACTTCCAGATTAATAGGAAGGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006354 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1021

Amino Acids

114.71

Weight (kDa)

8.85

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	17 - 316	2.5e-06	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	128 - 315	6.9e-54	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	376 - 444	5.6e-23	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_6	PF00562	649 - 929	7.6e-76	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	931 - 1006	3.6e-22	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00190
malus_domestica	MD01G1093300.v1.1 MD16G1169300.v1.1
pyrus_communis	pycom12397g00320 pycom14g07090
rosa_chinensis	RchiOBHm_CPg0502401
rosa_laevigata	RLG00000000047 RLG00000000087 RLG00000000116 RLG00000000175 RLG00000000231 RLG00000000246 RLG00000000284 RLG00000000299 RLG00000000300 RLG00000000314 RLG00000000318 RLG00000000340
rosa_multiflora	Rmu_sc0002986.1_g000010 Rmu_sc0008812.1_g000013 Rmu_sc0011830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00119070
rosa_rugosa	Rorug02G0490800 RorugMtG0001900
rosa_samantha	Rh2AG293900 Rh2AG294000 Rh2DG317800 Rh2DG317900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	108, 2247, 2672, 2874
AccBSI	CCGCTC	2 cut(s)	1663, 1886
AccI	GTMKAC	1 cut(s)	787
AccII	CGCG	5 cut(s)	251, 850, 953, 2428, 2948
AccIII	TCCGGA	1 cut(s)	2110
AclI	AACGTT	1 cut(s)	1837
AcuI	CTGAAG	1 cut(s)	1302
AfaI	GTAC	4 cut(s)	904, 1392, 2907, 2914
AfiI	CCNNNNNNNGG	4 cut(s)	2189, 2230, 2774, 2790
AflIII	ACRYGT	1 cut(s)	1853
AgeI	ACCGGT	1 cut(s)	402
AjnI	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1872, 2039
AjuI	GAANNNNNNNTTGG	2 cut(s)	1089, 1121
AloI	GAACNNNNNNTCC	2 cut(s)	2635, 2667
AluBI	AGCT	8 cut(s)	557, 866, 1496, 1583, 1625, 2312, 2894, 3059
AluI	AGCT	8 cut(s)	557, 866, 1496, 1583, 1625, 2312, 2894, 3059
Alw21I	GWGCWC	1 cut(s)	2896
Alw26I	GTCTC	1 cut(s)	1350
Ama87I	CYCGRG	1 cut(s)	2462
Aor13HI	TCCGGA	1 cut(s)	2110
AoxI	GGCC	4 cut(s)	981, 1189, 1455, 2781
ApaI	GGGCCC	1 cut(s)	1193
ApeKI	GCWGC	3 cut(s)	863, 866, 1895
ArsI	GACNNNNNNTTYG	2 cut(s)	2084, 2116
AseI	ATTAAT	3 cut(s)	257, 2699, 3045
AsiGI	ACCGGT	1 cut(s)	402
Asp700I	GAANNNNTTC	5 cut(s)	1536, 2259, 2964, 3014, 3035
AspS9I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 1952, 2781
AsuC2I	CCSGG	2 cut(s)	1726, 2616
AsuHPI	GGTGA	4 cut(s)	1232, 1401, 2066, 2312
AsuII	TTCGAA	2 cut(s)	566, 1546
AvaI	CYCGRG	1 cut(s)	2462
AvaII	GGWCC	2 cut(s)	415, 1952
BaeGI	GKGCMC	1 cut(s)	1193
BaeI	ACNNNNGTAYC	2 cut(s)	2594, 2627
BamHI	GGATCC	4 cut(s)	1307, 2036, 2220, 2650
BanII	GRGCYC	4 cut(s)	511, 1193, 2827, 2896
BarI	GAAGNNNNNNTAC	2 cut(s)	1980, 2012
BauI	CACGAG	2 cut(s)	510, 2975
BbsI	GAAGAC	3 cut(s)	2323, 2392, 2395
Bbv12I	GWGCWC	1 cut(s)	2896
BbvI	GCAGC	3 cut(s)	853, 875, 1882
BccI	CCATC	5 cut(s)	1883, 2080, 2211, 2375, 2630
BciT130I	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2041
BciVI	GTATCC	6 cut(s)	256, 1221, 1765, 1798, 2161, 2622
BclI	TGATCA	2 cut(s)	82, 366
BcnI	CCSGG	2 cut(s)	1726, 2616
BcoDI	GTCTC	1 cut(s)	1350
BfmI	CTRYAG	2 cut(s)	339, 1737
BfuI	GTATCC	6 cut(s)	256, 1221, 1765, 1798, 2161, 2622
BisI	GCNGC	5 cut(s)	864, 867, 1440, 1896, 2081
BlsI	GCNGC	5 cut(s)	865, 868, 1441, 1897, 2082
BmcAI	AGTACT	1 cut(s)	2907
Bme1390I	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1726, 1874, 2041, 2616
Bme18I	GGWCC	2 cut(s)	415, 1952
BmeT110I	CYCGRG	1 cut(s)	2462
BmgT120I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 1952, 2781
BmiI	GGNNCC	6 cut(s)	1191, 1309, 1731, 2038, 2222, 2652
BmrFI	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1726, 1874, 2041, 2616
BmrI	ACTGGG	2 cut(s)	1239, 1704
BmsI	GCATC	6 cut(s)	193, 453, 1386, 1603, 2853, 2941
BmuI	ACTGGG	2 cut(s)	1239, 1704
BpiI	GAAGAC	3 cut(s)	2323, 2392, 2395
BpmI	CTGGAG	1 cut(s)	1215
Bpu10I	CCTNAGC	1 cut(s)	1312
Bpu14I	TTCGAA	2 cut(s)	566, 1546
BpuEI	CTTGAG	1 cut(s)	1110
BpuMI	CCSGG	2 cut(s)	1726, 2616
BsaAI	YACGTR	1 cut(s)	1854
BsaBI	GATNNNNATC	3 cut(s)	132, 918, 1617
BsaI	GGTCTC	1 cut(s)	1350
BsaWI	WCCGGW	3 cut(s)	402, 709, 2110
BsaXI	ACNNNNNCTCC	4 cut(s)	696, 726, 1060, 1090
Bsc4I	CCNNNNNNNGG	4 cut(s)	2189, 2230, 2774, 2790
Bse118I	RCCGGY	2 cut(s)	402, 440
Bse1I	ACTGG	5 cut(s)	417, 1245, 1699, 2550, 2571
Bse3DI	GCAATG	1 cut(s)	1804
Bse8I	GATNNNNATC	3 cut(s)	132, 918, 1617
BseAI	TCCGGA	1 cut(s)	2110
BseBI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2041
BseGI	GGATG	3 cut(s)	1401, 1894, 2956
BseJI	GATNNNNATC	3 cut(s)	132, 918, 1617
BseLI	CCNNNNNNNGG	4 cut(s)	2189, 2230, 2774, 2790
BseMI	GCAATG	1 cut(s)	1804
BseMII	CTCAG	5 cut(s)	839, 1070, 1365, 2598, 3018
BseNI	ACTGG	5 cut(s)	417, 1245, 1699, 2550, 2571
BseRI	GAGGAG	1 cut(s)	1044
BseSI	GKGCMC	1 cut(s)	1193
BseXI	GCAGC	3 cut(s)	853, 875, 1882
BseYI	CCCAGC	1 cut(s)	2032
Bsh1236I	CGCG	5 cut(s)	251, 850, 953, 2428, 2948
BshFI	GGCC	4 cut(s)	983, 1191, 1457, 2783
BshTI	ACCGGT	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	2896
BsiHKCI	CYCGRG	1 cut(s)	2462
BsiSI	CCGG	6 cut(s)	403, 441, 710, 1725, 2111, 2615
BslFI	GGGAC	3 cut(s)	1027, 2808, 2944
BslI	CCNNNNNNNGG	4 cut(s)	2189, 2230, 2774, 2790
BsmAI	GTCTC	1 cut(s)	1350
BsmFI	GGGAC	3 cut(s)	1027, 2808, 2944
BsmI	GAATGC	3 cut(s)	595, 2142, 2459
BsnI	GGCC	4 cut(s)	983, 1191, 1457, 2783
Bso31I	GGTCTC	1 cut(s)	1350
BsoBI	CYCGRG	1 cut(s)	2462
Bsp119I	TTCGAA	2 cut(s)	566, 1546
Bsp120I	GGGCCC	1 cut(s)	1189
Bsp1286I	GDGCHC	4 cut(s)	511, 1193, 2827, 2896
Bsp13I	TCCGGA	1 cut(s)	2110
Bsp19I	CCATGG	1 cut(s)	2591
Bsp68I	TCGCGA	1 cut(s)	2428
BspANI	GGCC	4 cut(s)	983, 1191, 1457, 2783
BspCNI	CTCAG	5 cut(s)	838, 1069, 1366, 2599, 3019
BspEI	TCCGGA	1 cut(s)	2110
BspFNI	CGCG	5 cut(s)	251, 850, 953, 2428, 2948
BspLI	GGNNCC	6 cut(s)	1191, 1309, 1731, 2038, 2222, 2652
BspT104I	TTCGAA	2 cut(s)	566, 1546
BspTNI	GGTCTC	1 cut(s)	1350
BsrBI	CCGCTC	2 cut(s)	1663, 1886
BsrDI	GCAATG	1 cut(s)	1804
BsrFI	RCCGGY	2 cut(s)	402, 440
BsrI	ACTGG	5 cut(s)	417, 1245, 1699, 2550, 2571
BssAI	RCCGGY	2 cut(s)	402, 440
BssSI	CACGAG	2 cut(s)	510, 2975
BssT1I	CCWWGG	1 cut(s)	2591
Bst2BI	CACGAG	2 cut(s)	510, 2975
Bst2UI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2041
Bst4CI	ACNGT	6 cut(s)	186, 272, 1505, 1522, 1903, 1952
BstAPI	GCANNNNNTGC	1 cut(s)	1322
BstBAI	YACGTR	1 cut(s)	1854
BstBI	TTCGAA	2 cut(s)	566, 1546
BstC8I	GCNNGC	2 cut(s)	595, 1884
BstDEI	CTNAG	8 cut(s)	572, 825, 1056, 1312, 1374, 2607, 2771, 3027
BstDSI	CCRYGG	3 cut(s)	249, 2591, 2946
BstF5I	GGATG	3 cut(s)	1401, 1894, 2956
BstFNI	CGCG	5 cut(s)	251, 850, 953, 2428, 2948
BstMAI	GTCTC	1 cut(s)	1350
BstMWI	GCNNNNNNNGC	4 cut(s)	1322, 1622, 1892, 2374
BstNI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2041
BstSCI	CCNGG	9 cut(s)	37, 327, 388, 984, 1192, 1724, 1872, 2039, 2614
BstSFI	CTRYAG	2 cut(s)	339, 1737
BstSLI	GKGCMC	1 cut(s)	1193
BstUI	CGCG	5 cut(s)	251, 850, 953, 2428, 2948
BstV1I	GCAGC	3 cut(s)	853, 875, 1882
BstV2I	GAAGAC	3 cut(s)	2323, 2392, 2395
BstX2I	RGATCY	6 cut(s)	706, 955, 1307, 2036, 2220, 2650
BstYI	RGATCY	6 cut(s)	706, 955, 1307, 2036, 2220, 2650
BsuI	GTATCC	6 cut(s)	256, 1221, 1765, 1798, 2161, 2622
BsuRI	GGCC	4 cut(s)	983, 1191, 1457, 2783
BtgI	CCRYGG	3 cut(s)	249, 2591, 2946
BtsCI	GGATG	3 cut(s)	1401, 1894, 2956
BtuMI	TCGCGA	1 cut(s)	2428
Cac8I	GCNNGC	2 cut(s)	595, 1884
Cfr10I	RCCGGY	2 cut(s)	402, 440
Cfr13I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 1952, 2781
Cfr42I	CCGCGG	2 cut(s)	252, 2949
CseI	GACGC	1 cut(s)	1266
Csp6I	GTAC	4 cut(s)	903, 1391, 2906, 2913
CspAI	ACCGGT	1 cut(s)	402
CviAII	CATG	7 cut(s)	1166, 1322, 1748, 1937, 2321, 2592, 2726
CviQI	GTAC	4 cut(s)	903, 1391, 2906, 2913
DdeI	CTNAG	8 cut(s)	572, 825, 1056, 1312, 1374, 2607, 2771, 3027
EciI	GGCGGA	1 cut(s)	717
Ecl136II	GAGCTC	1 cut(s)	2894
Eco130I	CCWWGG	1 cut(s)	2591
Eco24I	GRGCYC	4 cut(s)	511, 1193, 2827, 2896
Eco31I	GGTCTC	1 cut(s)	1350
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	2 cut(s)	415, 1952
Eco53kI	GAGCTC	1 cut(s)	2894
Eco57I	CTGAAG	1 cut(s)	1302
Eco88I	CYCGRG	1 cut(s)	2462
EcoICRI	GAGCTC	1 cut(s)	2894
EcoO109I	RGGNCCY	1 cut(s)	1190
EcoRI	GAATTC	2 cut(s)	322, 1511
EcoRII	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1872, 2039
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	1 cut(s)	2591
EcoT38I	GRGCYC	4 cut(s)	511, 1193, 2827, 2896
ErhI	CCWWGG	1 cut(s)	2591
FaeI	CATG	7 cut(s)	1169, 1325, 1751, 1940, 2324, 2595, 2729
FalI	AAGNNNNNCTT	4 cut(s)	2850, 2882, 2892, 2924
FaqI	GGGAC	3 cut(s)	1027, 2808, 2944
FatI	CATG	7 cut(s)	1165, 1321, 1747, 1936, 2320, 2591, 2725
FauI	CCCGC	4 cut(s)	244, 1741, 2464, 2953
FauNDI	CATATG	1 cut(s)	2104
FbaI	TGATCA	2 cut(s)	82, 366
FblI	GTMKAC	1 cut(s)	787
Fnu4HI	GCNGC	5 cut(s)	864, 867, 1440, 1896, 2081
FokI	GGATG	3 cut(s)	1408, 1901, 2963
FriOI	GRGCYC	4 cut(s)	511, 1193, 2827, 2896
Fsp4HI	GCNGC	5 cut(s)	864, 867, 1440, 1896, 2081
GluI	GCNGC	5 cut(s)	864, 867, 1440, 1896, 2081
GsaI	CCCAGC	1 cut(s)	2036
GsuI	CTGGAG	1 cut(s)	1215
HaeIII	GGCC	4 cut(s)	983, 1191, 1457, 2783
HapII	CCGG	6 cut(s)	403, 441, 710, 1725, 2111, 2615
HgaI	GACGC	1 cut(s)	1266
Hin1II	CATG	7 cut(s)	1169, 1325, 1751, 1940, 2324, 2595, 2729
HincII	GTYRAC	1 cut(s)	788
HindII	GTYRAC	1 cut(s)	788
HindIII	AAGCTT	1 cut(s)	3057
HpaII	CCGG	6 cut(s)	403, 441, 710, 1725, 2111, 2615
HphI	GGTGA	4 cut(s)	1232, 1401, 2066, 2312
Hpy166II	GTNNAC	4 cut(s)	346, 788, 905, 2741
Hpy8I	GTNNAC	4 cut(s)	346, 788, 905, 2741
Hpy99I	CGWCG	1 cut(s)	792
HpyAV	CCTTC	8 cut(s)	56, 771, 798, 1277, 1570, 2433, 2772, 3046
HpyCH4III	ACNGT	6 cut(s)	186, 272, 1505, 1522, 1903, 1952
HpyCH4IV	ACGT	6 cut(s)	937, 1648, 1837, 1853, 2284, 2731
HpyCH4V	TGCA	7 cut(s)	283, 382, 1645, 1683, 1861, 2377, 2750
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1322, 1622, 1892, 2374
HpyF3I	CTNAG	8 cut(s)	572, 825, 1056, 1312, 1374, 2607, 2771, 3027
HpySE526I	ACGT	6 cut(s)	937, 1648, 1837, 1853, 2284, 2731
Hsp92II	CATG	7 cut(s)	1169, 1325, 1751, 1940, 2324, 2595, 2729
Kpn2I	TCCGGA	1 cut(s)	2110
Ksp22I	TGATCA	2 cut(s)	82, 366
KspI	CCGCGG	2 cut(s)	252, 2949
LmnI	GCTCC	4 cut(s)	1025, 1580, 2113, 2959
Lsp1109I	GCAGC	3 cut(s)	853, 875, 1882
LweI	GCATC	6 cut(s)	193, 453, 1386, 1603, 2853, 2941
MaeII	ACGT	6 cut(s)	937, 1648, 1837, 1853, 2284, 2731
MaeIII	GTNAC	5 cut(s)	843, 1066, 1247, 1939, 2755
MbiI	CCGCTC	2 cut(s)	1663, 1886
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	6 cut(s)	706, 955, 1307, 2036, 2220, 2650
MhlI	GDGCHC	4 cut(s)	511, 1193, 2827, 2896
MmeI	TCCRAC	4 cut(s)	1276, 1669, 1680, 1866
MroI	TCCGGA	1 cut(s)	2110
MroXI	GAANNNNTTC	5 cut(s)	1536, 2259, 2964, 3014, 3035
MslI	CAYNNNNRTG	1 cut(s)	1611
MspA1I	CMGCKG	3 cut(s)	251, 866, 2948
MspI	CCGG	6 cut(s)	403, 441, 710, 1725, 2111, 2615
MspR9I	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1726, 1874, 2041, 2616
MunI	CAATTG	1 cut(s)	173
Mva1269I	GAATGC	3 cut(s)	595, 2142, 2459
MvaI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2041
MvnI	CGCG	5 cut(s)	251, 850, 953, 2428, 2948
MwoI	GCNNNNNNNGC	4 cut(s)	1322, 1622, 1892, 2374
NciI	CCSGG	2 cut(s)	1726, 2616
NcoI	CCATGG	1 cut(s)	2591
NdeI	CATATG	1 cut(s)	2104
NlaIII	CATG	7 cut(s)	1169, 1325, 1751, 1940, 2324, 2595, 2729
NlaIV	GGNNCC	6 cut(s)	1191, 1309, 1731, 2038, 2222, 2652
NmuCI	GTSAC	2 cut(s)	1247, 1939
NruI	TCGCGA	1 cut(s)	2428
NspV	TTCGAA	2 cut(s)	566, 1546
PasI	CCCWGGG	1 cut(s)	328
PctI	GAATGC	3 cut(s)	595, 2142, 2459
PdmI	GAANNNNTTC	5 cut(s)	1536, 2259, 2964, 3014, 3035
PfoI	TCCNGGA	1 cut(s)	2614
PinAI	ACCGGT	1 cut(s)	402
PkrI	GCNGC	5 cut(s)	865, 868, 1441, 1897, 2082
Ppu21I	YACGTR	1 cut(s)	1854
PshBI	ATTAAT	3 cut(s)	257, 2699, 3045
PsiI	TTATAA	4 cut(s)	108, 2247, 2672, 2874
Psp124BI	GAGCTC	1 cut(s)	2896
Psp1406I	AACGTT	1 cut(s)	1837
Psp6I	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1872, 2039
PspFI	CCCAGC	1 cut(s)	2032
PspGI	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1872, 2039
PspN4I	GGNNCC	6 cut(s)	1191, 1309, 1731, 2038, 2222, 2652
PspOMI	GGGCCC	1 cut(s)	1189
PspPI	GGNCC	6 cut(s)	415, 982, 1189, 1190, 1952, 2781
PsuI	RGATCY	6 cut(s)	706, 955, 1307, 2036, 2220, 2650
PvuII	CAGCTG	1 cut(s)	866
RruI	TCGCGA	1 cut(s)	2428
RsaI	GTAC	4 cut(s)	904, 1392, 2907, 2914
RsaNI	GTAC	4 cut(s)	903, 1391, 2906, 2913
RseI	CAYNNNNRTG	1 cut(s)	1611
SacI	GAGCTC	1 cut(s)	2896
SacII	CCGCGG	2 cut(s)	252, 2949
SalI	GTCGAC	1 cut(s)	786
SatI	GCNGC	5 cut(s)	864, 867, 1440, 1896, 2081
Sau96I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 1952, 2781
ScaI	AGTACT	1 cut(s)	2907
ScrFI	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1726, 1874, 2041, 2616
SduI	GDGCHC	4 cut(s)	511, 1193, 2827, 2896
SfaNI	GCATC	6 cut(s)	193, 453, 1386, 1603, 2853, 2941
SfcI	CTRYAG	2 cut(s)	339, 1737
Sfr303I	CCGCGG	2 cut(s)	252, 2949
SfuI	TTCGAA	2 cut(s)	566, 1546
SgrBI	CCGCGG	2 cut(s)	252, 2949
SinI	GGWCC	2 cut(s)	415, 1952
SmiMI	CAYNNNNRTG	1 cut(s)	1611
SmlI	CTYRAG	1 cut(s)	1125
SmoI	CTYRAG	1 cut(s)	1125
SspI	AATATT	4 cut(s)	310, 378, 1568, 2631
SstI	GAGCTC	1 cut(s)	2896
StyD4I	CCNGG	9 cut(s)	37, 327, 388, 984, 1192, 1724, 1872, 2039, 2614
StyI	CCWWGG	1 cut(s)	2591
TaaI	ACNGT	6 cut(s)	186, 272, 1505, 1522, 1903, 1952
TaiI	ACGT	6 cut(s)	940, 1651, 1840, 1856, 2287, 2734
TaqII	GACCGA	2 cut(s)	933, 1659
TatI	WGTACW	1 cut(s)	2905
TauI	GCSGC	2 cut(s)	1442, 2083
TseFI	GTSAC	2 cut(s)	1247, 1939
TseI	GCWGC	3 cut(s)	863, 866, 1895
Tsp45I	GTSAC	2 cut(s)	1247, 1939
TspGWI	ACGGA	6 cut(s)	363, 438, 1269, 1347, 1408, 1784
VpaK11BI	GGWCC	2 cut(s)	415, 1952
VspI	ATTAAT	3 cut(s)	257, 2699, 3045
XbaI	TCTAGA	4 cut(s)	583, 1348, 1984, 2827
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1163
XmiI	GTMKAC	1 cut(s)	787
XmnI	GAANNNNTTC	5 cut(s)	1536, 2259, 2964, 3014, 3035
ZrmI	AGTACT	1 cut(s)	2907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.