Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0005882

Physical Location & Seq

Genomic Coordinates Reverse (-)

801695 .. 804906

Gene Structure 3212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000175

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3108 bp

ATGCTTGGAGGTGGAAATGAGGCAATATCTACAATACCTGGATTTAATCAGATACAATTTGAAGGGTTTTGTAGGTTCATTGATCAGGGCTTAACAGAGGAACTTTATAAGTTTCCAAAAATTGAAGATACAGATCAAGAAATTGAATTTCAATTATTTGTGGAAACATATCAATTGGTAGAACCGTTGATAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTTCGGAATTATATGTATCCGCGGGATTAATTTGGAAAAACAGTAGGGATATGCAAGAACAAACAATTTTTATTGGAAATATTCCTCTAATGAATTCCCTGGGAACTTCTATAGTAAACGGAATATACAGAATTGTGATCAATCAAATATTGCAAAGCCCTGGTATCTATTACCGGTCAGAACTGGACCATAACGGAATTTCAGTCTATACCGGCATCATAATATCAGATTGGGGAGGGAGATTAGAATTAGAGATTGATAGAAAAGCAAGGATATGGGCTCGTGTCAGTAGGAAACAAAAAATATCTATTCTAGTTCTATCATCAGCTATGGGTTCGAATCTAAGAGAAATTCTAGAGAATGCTCGCTACCCCGAAATTTTCTTGTCTTTCCTGAATGATAAGGAGAAAAAAAAAATCGGGTCAAAAGAAAATGCCATTTTGGAGTTTTATCAACAATTTGCTTGTGTAGGCGGAGATCCGGTAGTTTCTGAATCCTTATGTAAGGAATTACAAAAAAAATTCTTTCAACAAAGATGTGAGTTAGGAAGGATTGGTCGACGAAATATGAACCGAAGGCTGAATCTTGATATCCCTCAGAACAACACATTTTTGTTACCGCGAGATATATTGGCAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGACGATATGAATCATTTGAAAAATAAACGTATTCGGTCTGTCGCGGATCTTTTACAAGACCAATTCGGATTGGCCCTGGTTCGTTTAGAAAATATGGTTAGAGGGACTATATGCGGAGCAATTAAGCATAAATTGATACCCACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACCACTTATGAATCTTTTTTTGGATTACACCCATTATCTCAAGTTTTGGATCAAACTAATCCATTGACCCAAATAGTTCATGGGAGAAAATCGAGTTATCTGGGCCCTGGAGGATTGACAGGGCGAACTGCTAGTTTTCGGATACGAGATATTCACCCCAGTCACTACGGACGCATTTGCCCCATTGACACCTCTGAAGGAATCAATGTTGGACTTATTGGATCCTTAGCAATTCATGCGAAGATTGCGGCAGGAAATTCTTTGGCCTTGAATCGAGGTATTCAGGAAGAACAGGTTGTTCCAGCTCGATACCGTCAAGAATTCCTGACTGTTGAATGGGAACAGGTTCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTGATTCCTTTTATTGAGCATAATGATGCGAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCGCTCTCTCGGTCTGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTTTAGATTCCGGGGTTCCCGCTATAGCCGAACATGAGGGAAAGATCATTTATACGGATACTGACAAGATAATTTTATCGGGCAATGGGGATACTCTAAACATTCCATTAGTTATATACCAACGTTCCAACAAAAATACGTGTATGCACCAAAAACCCCAGGTTCAGCGAGGTAAATGTATTAAAAAGGGACAAATTTTAGCGGATGGTGCTGCTACGGTTGGTGGCGAACTCGCTTTGGGAAAAAATGTATTAGTAGCTTATATGCCGTGGGAGGGTTACAATTCTGAAGATGCGGTACTTATTAGTGAGCGTCTGGTATATGGAGATATTTATACTTCTTTTCACATAAGGAAATATGAAATTCAGACTCATGTGACAAGCAACGGTCCTGAAAGAATTACTAACGAAATACCACATCTAGAAGCCCATTTACTCCGCAATTTAGACAAAAATGGAATTGTGAGGCTGGGATCCTGGGTAAAGACGGGTGATATTTTAGTAGGTAAATTAACGCCGCAGATGGCGAAAGAATCGTCATATGCTCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAGGAAACTTGTCTAAAATTACCGATAGGTGGTAGAGGTCGAGTTATTGATGTAAGATGGATCCAGAAAAAGGGAGGTTCTAGTTATAATCCAGAAACGATTCGTGTATATATTTCACAAAAACGTGAAATCAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCGTTTCAAAAATTTTACCTAGACAAGATATGCCTTATTTGCAAGATGGAAGACCTGTTGATATGGTCTTCAACCCATTAGGAGTTCCTTCGCGAATGAATGTAGGACAGATATTTGAATGCTCACTCGGGTTAGCGGGAGGTCTGCTAGATAGACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCAAGAAAACTGGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCGAATCCATGGGTATTTGAACCTGAGTATCCGGGAAAAAGCAGAATATTTGATGGAAGAACGGGGGATCCTTTTGAACAACCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACATGGACGTTCTAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGCAAGGGGGACAACGGGTAGGAGAAATGGAAGTTTGGGCTCTAGAGGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCGGATCATATTAGAGCTCGTCAAGAAGTACTTGGTACTACAATCATTGGAGGGACAATACCTCAACCCGCGGATGCTCCCGAATCTTTTCGATTGCTCGTGCGAGAACTACGATCTTTGGCTCTGGAACTGAACCATTTCCTTGTATCTGAGAAGAACTTCCAGATTAATAGGAAGGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006354 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1036

Amino Acids

116.3

Weight (kDa)

8.83

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	17 - 316	2.6e-06	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	128 - 315	7.1e-54	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	376 - 444	5.7e-23	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_6	PF00562	546 - 944	7.2e-104	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	946 - 1021	3.6e-22	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00190
malus_domestica	MD01G1093300.v1.1 MD16G1169300.v1.1
pyrus_communis	pycom12397g00320 pycom14g07090
rosa_chinensis	RchiOBHm_CPg0502401
rosa_laevigata	RLG00000000047 RLG00000000087 RLG00000000116 RLG00000000175 RLG00000000231 RLG00000000246 RLG00000000284 RLG00000000299 RLG00000000300 RLG00000000314 RLG00000000318 RLG00000000340
rosa_multiflora	Rmu_sc0002986.1_g000010 Rmu_sc0008812.1_g000013 Rmu_sc0011830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00119070
rosa_rugosa	Rorug02G0490800 RorugMtG0001900
rosa_samantha	Rh2AG293900 Rh2AG294000 Rh2DG317800 Rh2DG317900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	108, 2292, 2717, 2919
AccBSI	CCGCTC	1 cut(s)	1558
AccI	GTMKAC	1 cut(s)	787
AccII	CGCG	5 cut(s)	251, 850, 953, 2473, 2993
AccIII	TCCGGA	1 cut(s)	2155
AclI	AACGTT	1 cut(s)	1732
AcuI	CTGAAG	2 cut(s)	1302, 1917
AfaI	GTAC	4 cut(s)	904, 1908, 2952, 2959
AfiI	CCNNNNNNNGG	5 cut(s)	1883, 2234, 2275, 2819, 2835
AflIII	ACRYGT	1 cut(s)	1748
AgeI	ACCGGT	1 cut(s)	402
AjnI	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1767, 2084
AjuI	GAANNNNNNNTTGG	2 cut(s)	1089, 1121
AloI	GAACNNNNNNTCC	2 cut(s)	2680, 2712
AluBI	AGCT	9 cut(s)	557, 866, 1391, 1478, 1520, 1868, 2357, 2939, 3104
AluI	AGCT	9 cut(s)	557, 866, 1391, 1478, 1520, 1868, 2357, 2939, 3104
Alw21I	GWGCWC	1 cut(s)	2941
Ama87I	CYCGRG	1 cut(s)	2507
Aor13HI	TCCGGA	1 cut(s)	2155
AoxI	GGCC	4 cut(s)	981, 1189, 1350, 2826
ApaI	GGGCCC	1 cut(s)	1193
ApeKI	GCWGC	3 cut(s)	863, 866, 1820
ArsI	GACNNNNNNTTYG	2 cut(s)	2129, 2161
AseI	ATTAAT	3 cut(s)	257, 2744, 3090
AsiGI	ACCGGT	1 cut(s)	402
Asp700I	GAANNNNTTC	5 cut(s)	1431, 2304, 3009, 3059, 3080
AspS9I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 1997, 2826
AsuC2I	CCSGG	2 cut(s)	1621, 2661
AsuHPI	GGTGA	3 cut(s)	1232, 2111, 2357
AsuII	TTCGAA	2 cut(s)	566, 1441
AvaI	CYCGRG	1 cut(s)	2507
AvaII	GGWCC	2 cut(s)	415, 1997
BaeGI	GKGCMC	1 cut(s)	1193
BaeI	ACNNNNGTAYC	2 cut(s)	2639, 2672
BamHI	GGATCC	4 cut(s)	1307, 2081, 2265, 2695
BanII	GRGCYC	4 cut(s)	511, 1193, 2872, 2941
BarI	GAAGNNNNNNTAC	4 cut(s)	1890, 1922, 2025, 2057
BauI	CACGAG	2 cut(s)	510, 3020
BbsI	GAAGAC	3 cut(s)	2368, 2437, 2440
Bbv12I	GWGCWC	1 cut(s)	2941
BbvI	GCAGC	3 cut(s)	853, 875, 1807
BccI	CCATC	5 cut(s)	1808, 2125, 2256, 2420, 2675
BceAI	ACGGC	1 cut(s)	1861
BciT130I	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1769, 2086
BciVI	GTATCC	6 cut(s)	256, 1221, 1660, 1693, 2206, 2667
BclI	TGATCA	2 cut(s)	82, 366
BcnI	CCSGG	2 cut(s)	1621, 2661
BfaI	CTAG	9 cut(s)	542, 584, 1218, 2030, 2286, 2400, 2528, 2781, 2873
BfmI	CTRYAG	2 cut(s)	339, 1632
BfuI	GTATCC	6 cut(s)	256, 1221, 1660, 1693, 2206, 2667
BisI	GCNGC	5 cut(s)	864, 867, 1335, 1821, 2126
BlsI	GCNGC	5 cut(s)	865, 868, 1336, 1822, 2127
BmcAI	AGTACT	1 cut(s)	2952
Bme1390I	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1621, 1769, 2086, 2661
Bme18I	GGWCC	2 cut(s)	415, 1997
BmeT110I	CYCGRG	1 cut(s)	2507
BmgT120I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 1997, 2826
BmiI	GGNNCC	6 cut(s)	1191, 1309, 1626, 2083, 2267, 2697
BmrFI	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1621, 1769, 2086, 2661
BmrI	ACTGGG	2 cut(s)	1239, 1599
BmsI	GCATC	6 cut(s)	193, 453, 1498, 1891, 2898, 2986
BmuI	ACTGGG	2 cut(s)	1239, 1599
BpiI	GAAGAC	3 cut(s)	2368, 2437, 2440
BpmI	CTGGAG	1 cut(s)	1215
Bpu10I	CCTNAGC	1 cut(s)	1312
Bpu14I	TTCGAA	2 cut(s)	566, 1441
BpuEI	CTTGAG	1 cut(s)	1110
BpuMI	CCSGG	2 cut(s)	1621, 2661
BsaAI	YACGTR	1 cut(s)	1749
BsaBI	GATNNNNATC	3 cut(s)	132, 918, 1512
BsaWI	WCCGGW	3 cut(s)	402, 709, 2155
BsaXI	ACNNNNNCTCC	4 cut(s)	696, 726, 1060, 1090
Bsc4I	CCNNNNNNNGG	5 cut(s)	1883, 2234, 2275, 2819, 2835
Bse118I	RCCGGY	2 cut(s)	402, 440
Bse1I	ACTGG	5 cut(s)	417, 1245, 1594, 2595, 2616
Bse3DI	GCAATG	1 cut(s)	1699
Bse8I	GATNNNNATC	3 cut(s)	132, 918, 1512
BseAI	TCCGGA	1 cut(s)	2155
BseBI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1769, 2086
BseGI	GGATG	2 cut(s)	1819, 3001
BseJI	GATNNNNATC	3 cut(s)	132, 918, 1512
BseLI	CCNNNNNNNGG	5 cut(s)	1883, 2234, 2275, 2819, 2835
BseMI	GCAATG	1 cut(s)	1699
BseMII	CTCAG	4 cut(s)	839, 1070, 2643, 3063
BseNI	ACTGG	5 cut(s)	417, 1245, 1594, 2595, 2616
BseRI	GAGGAG	1 cut(s)	1044
BseSI	GKGCMC	1 cut(s)	1193
BseXI	GCAGC	3 cut(s)	853, 875, 1807
BseYI	CCCAGC	1 cut(s)	2077
Bsh1236I	CGCG	5 cut(s)	251, 850, 953, 2473, 2993
BshFI	GGCC	4 cut(s)	983, 1191, 1352, 2828
BshTI	ACCGGT	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	2941
BsiHKCI	CYCGRG	1 cut(s)	2507
BsiSI	CCGG	6 cut(s)	403, 441, 710, 1620, 2156, 2660
BslFI	GGGAC	4 cut(s)	1027, 1812, 2853, 2989
BslI	CCNNNNNNNGG	5 cut(s)	1883, 2234, 2275, 2819, 2835
BsmFI	GGGAC	4 cut(s)	1027, 1812, 2853, 2989
BsmI	GAATGC	3 cut(s)	595, 2187, 2504
BsnI	GGCC	4 cut(s)	983, 1191, 1352, 2828
BsoBI	CYCGRG	1 cut(s)	2507
Bsp119I	TTCGAA	2 cut(s)	566, 1441
Bsp120I	GGGCCC	1 cut(s)	1189
Bsp1286I	GDGCHC	4 cut(s)	511, 1193, 2872, 2941
Bsp13I	TCCGGA	1 cut(s)	2155
Bsp19I	CCATGG	1 cut(s)	2636
Bsp68I	TCGCGA	1 cut(s)	2473
BspANI	GGCC	4 cut(s)	983, 1191, 1352, 2828
BspCNI	CTCAG	4 cut(s)	838, 1069, 2644, 3064
BspEI	TCCGGA	1 cut(s)	2155
BspFNI	CGCG	5 cut(s)	251, 850, 953, 2473, 2993
BspLI	GGNNCC	6 cut(s)	1191, 1309, 1626, 2083, 2267, 2697
BspT104I	TTCGAA	2 cut(s)	566, 1441
BsrBI	CCGCTC	1 cut(s)	1558
BsrDI	GCAATG	1 cut(s)	1699
BsrFI	RCCGGY	2 cut(s)	402, 440
BsrI	ACTGG	5 cut(s)	417, 1245, 1594, 2595, 2616
BssAI	RCCGGY	2 cut(s)	402, 440
BssSI	CACGAG	2 cut(s)	510, 3020
BssT1I	CCWWGG	1 cut(s)	2636
Bst2BI	CACGAG	2 cut(s)	510, 3020
Bst2UI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1769, 2086
Bst4CI	ACNGT	6 cut(s)	186, 272, 1400, 1417, 1828, 1997
BstAPI	GCANNNNNTGC	1 cut(s)	1322
BstBAI	YACGTR	1 cut(s)	1749
BstBI	TTCGAA	2 cut(s)	566, 1441
BstC8I	GCNNGC	1 cut(s)	595
BstDEI	CTNAG	7 cut(s)	572, 825, 1056, 1312, 2652, 2816, 3072
BstDSI	CCRYGG	4 cut(s)	249, 1877, 2636, 2991
BstF5I	GGATG	2 cut(s)	1819, 3001
BstFNI	CGCG	5 cut(s)	251, 850, 953, 2473, 2993
BstMWI	GCNNNNNNNGC	5 cut(s)	1322, 1331, 1517, 1817, 2419
BstNI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1769, 2086
BstSCI	CCNGG	9 cut(s)	37, 327, 388, 984, 1192, 1619, 1767, 2084, 2659
BstSFI	CTRYAG	2 cut(s)	339, 1632
BstSLI	GKGCMC	1 cut(s)	1193
BstUI	CGCG	5 cut(s)	251, 850, 953, 2473, 2993
BstV1I	GCAGC	3 cut(s)	853, 875, 1807
BstV2I	GAAGAC	3 cut(s)	2368, 2437, 2440
BstX2I	RGATCY	6 cut(s)	706, 955, 1307, 2081, 2265, 2695
BstYI	RGATCY	6 cut(s)	706, 955, 1307, 2081, 2265, 2695
BsuI	GTATCC	6 cut(s)	256, 1221, 1660, 1693, 2206, 2667
BsuRI	GGCC	4 cut(s)	983, 1191, 1352, 2828
BtgI	CCRYGG	4 cut(s)	249, 1877, 2636, 2991
BtsCI	GGATG	2 cut(s)	1819, 3001
BtuMI	TCGCGA	1 cut(s)	2473
Cac8I	GCNNGC	1 cut(s)	595
Cfr10I	RCCGGY	2 cut(s)	402, 440
Cfr13I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 1997, 2826
Cfr42I	CCGCGG	2 cut(s)	252, 2994
CseI	GACGC	2 cut(s)	1266, 1910
Csp6I	GTAC	4 cut(s)	903, 1907, 2951, 2958
CspAI	ACCGGT	1 cut(s)	402
CviAII	CATG	7 cut(s)	1166, 1322, 1643, 1982, 2366, 2637, 2771
CviQI	GTAC	4 cut(s)	903, 1907, 2951, 2958
DdeI	CTNAG	7 cut(s)	572, 825, 1056, 1312, 2652, 2816, 3072
EciI	GGCGGA	1 cut(s)	717
Ecl136II	GAGCTC	1 cut(s)	2939
Eco130I	CCWWGG	1 cut(s)	2636
Eco24I	GRGCYC	4 cut(s)	511, 1193, 2872, 2941
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	2 cut(s)	415, 1997
Eco53kI	GAGCTC	1 cut(s)	2939
Eco57I	CTGAAG	2 cut(s)	1302, 1917
Eco88I	CYCGRG	1 cut(s)	2507
EcoICRI	GAGCTC	1 cut(s)	2939
EcoO109I	RGGNCCY	1 cut(s)	1190
EcoRI	GAATTC	2 cut(s)	322, 1406
EcoRII	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1767, 2084
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	1 cut(s)	2636
EcoT38I	GRGCYC	4 cut(s)	511, 1193, 2872, 2941
ErhI	CCWWGG	1 cut(s)	2636
FaeI	CATG	7 cut(s)	1169, 1325, 1646, 1985, 2369, 2640, 2774
FalI	AAGNNNNNCTT	4 cut(s)	2895, 2927, 2937, 2969
FaqI	GGGAC	4 cut(s)	1027, 1812, 2853, 2989
FatI	CATG	7 cut(s)	1165, 1321, 1642, 1981, 2365, 2636, 2770
FauI	CCCGC	4 cut(s)	244, 1636, 2509, 2998
FauNDI	CATATG	1 cut(s)	2149
FbaI	TGATCA	2 cut(s)	82, 366
FblI	GTMKAC	1 cut(s)	787
Fnu4HI	GCNGC	5 cut(s)	864, 867, 1335, 1821, 2126
FokI	GGATG	2 cut(s)	1826, 3008
FriOI	GRGCYC	4 cut(s)	511, 1193, 2872, 2941
Fsp4HI	GCNGC	5 cut(s)	864, 867, 1335, 1821, 2126
FspBI	CTAG	9 cut(s)	542, 584, 1218, 2030, 2286, 2400, 2528, 2781, 2873
GluI	GCNGC	5 cut(s)	864, 867, 1335, 1821, 2126
GsaI	CCCAGC	1 cut(s)	2081
GsuI	CTGGAG	1 cut(s)	1215
HaeIII	GGCC	4 cut(s)	983, 1191, 1352, 2828
HapII	CCGG	6 cut(s)	403, 441, 710, 1620, 2156, 2660
HgaI	GACGC	2 cut(s)	1266, 1910
Hin1II	CATG	7 cut(s)	1169, 1325, 1646, 1985, 2369, 2640, 2774
HincII	GTYRAC	1 cut(s)	788
HindII	GTYRAC	1 cut(s)	788
HindIII	AAGCTT	1 cut(s)	3102
HpaII	CCGG	6 cut(s)	403, 441, 710, 1620, 2156, 2660
HphI	GGTGA	3 cut(s)	1232, 2111, 2357
Hpy166II	GTNNAC	4 cut(s)	346, 788, 905, 2786
Hpy8I	GTNNAC	4 cut(s)	346, 788, 905, 2786
Hpy99I	CGWCG	1 cut(s)	792
HpyAV	CCTTC	8 cut(s)	56, 771, 798, 1277, 1465, 2478, 2817, 3091
HpyCH4III	ACNGT	6 cut(s)	186, 272, 1400, 1417, 1828, 1997
HpyCH4IV	ACGT	6 cut(s)	937, 1543, 1732, 1748, 2329, 2776
HpyCH4V	TGCA	7 cut(s)	283, 382, 1540, 1578, 1756, 2422, 2795
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1322, 1331, 1517, 1817, 2419
HpyF3I	CTNAG	7 cut(s)	572, 825, 1056, 1312, 2652, 2816, 3072
HpySE526I	ACGT	6 cut(s)	937, 1543, 1732, 1748, 2329, 2776
Hsp92II	CATG	7 cut(s)	1169, 1325, 1646, 1985, 2369, 2640, 2774
Kpn2I	TCCGGA	1 cut(s)	2155
Ksp22I	TGATCA	2 cut(s)	82, 366
KspI	CCGCGG	2 cut(s)	252, 2994
LmnI	GCTCC	4 cut(s)	1025, 1475, 2158, 3004
Lsp1109I	GCAGC	3 cut(s)	853, 875, 1807
LweI	GCATC	6 cut(s)	193, 453, 1498, 1891, 2898, 2986
MaeI	CTAG	9 cut(s)	542, 584, 1218, 2030, 2286, 2400, 2528, 2781, 2873
MaeII	ACGT	6 cut(s)	937, 1543, 1732, 1748, 2329, 2776
MaeIII	GTNAC	6 cut(s)	843, 1066, 1247, 1886, 1984, 2800
MbiI	CCGCTC	1 cut(s)	1558
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	6 cut(s)	706, 955, 1307, 2081, 2265, 2695
MhlI	GDGCHC	4 cut(s)	511, 1193, 2872, 2941
MlyI	GAGTC	1 cut(s)	1972
MmeI	TCCRAC	4 cut(s)	1276, 1564, 1575, 1761
MroI	TCCGGA	1 cut(s)	2155
MroXI	GAANNNNTTC	5 cut(s)	1431, 2304, 3009, 3059, 3080
MslI	CAYNNNNRTG	1 cut(s)	1506
MspA1I	CMGCKG	3 cut(s)	251, 866, 2993
MspI	CCGG	6 cut(s)	403, 441, 710, 1620, 2156, 2660
MspR9I	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1621, 1769, 2086, 2661
MunI	CAATTG	1 cut(s)	173
Mva1269I	GAATGC	3 cut(s)	595, 2187, 2504
MvaI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1769, 2086
MvnI	CGCG	5 cut(s)	251, 850, 953, 2473, 2993
MwoI	GCNNNNNNNGC	5 cut(s)	1322, 1331, 1517, 1817, 2419
NciI	CCSGG	2 cut(s)	1621, 2661
NcoI	CCATGG	1 cut(s)	2636
NdeI	CATATG	1 cut(s)	2149
NlaIII	CATG	7 cut(s)	1169, 1325, 1646, 1985, 2369, 2640, 2774
NlaIV	GGNNCC	6 cut(s)	1191, 1309, 1626, 2083, 2267, 2697
NmuCI	GTSAC	2 cut(s)	1247, 1984
NruI	TCGCGA	1 cut(s)	2473
NspV	TTCGAA	2 cut(s)	566, 1441
PasI	CCCWGGG	1 cut(s)	328
PctI	GAATGC	3 cut(s)	595, 2187, 2504
PdmI	GAANNNNTTC	5 cut(s)	1431, 2304, 3009, 3059, 3080
PfoI	TCCNGGA	1 cut(s)	2659
PinAI	ACCGGT	1 cut(s)	402
PkrI	GCNGC	5 cut(s)	865, 868, 1336, 1822, 2127
PleI	GAGTC	1 cut(s)	1972
PpsI	GAGTC	1 cut(s)	1972
Ppu21I	YACGTR	1 cut(s)	1749
PshBI	ATTAAT	3 cut(s)	257, 2744, 3090
PsiI	TTATAA	4 cut(s)	108, 2292, 2717, 2919
Psp124BI	GAGCTC	1 cut(s)	2941
Psp1406I	AACGTT	1 cut(s)	1732
Psp6I	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1767, 2084
PspFI	CCCAGC	1 cut(s)	2077
PspGI	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1767, 2084
PspN4I	GGNNCC	6 cut(s)	1191, 1309, 1626, 2083, 2267, 2697
PspOMI	GGGCCC	1 cut(s)	1189
PspPI	GGNCC	6 cut(s)	415, 982, 1189, 1190, 1997, 2826
PsuI	RGATCY	6 cut(s)	706, 955, 1307, 2081, 2265, 2695
PvuII	CAGCTG	1 cut(s)	866
RruI	TCGCGA	1 cut(s)	2473
RsaI	GTAC	4 cut(s)	904, 1908, 2952, 2959
RsaNI	GTAC	4 cut(s)	903, 1907, 2951, 2958
RseI	CAYNNNNRTG	1 cut(s)	1506
SacI	GAGCTC	1 cut(s)	2941
SacII	CCGCGG	2 cut(s)	252, 2994
SalI	GTCGAC	1 cut(s)	786
SatI	GCNGC	5 cut(s)	864, 867, 1335, 1821, 2126
Sau96I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 1997, 2826
ScaI	AGTACT	1 cut(s)	2952
SchI	GAGTC	1 cut(s)	1972
ScrFI	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1621, 1769, 2086, 2661
SduI	GDGCHC	4 cut(s)	511, 1193, 2872, 2941
SfaNI	GCATC	6 cut(s)	193, 453, 1498, 1891, 2898, 2986
SfcI	CTRYAG	2 cut(s)	339, 1632
Sfr303I	CCGCGG	2 cut(s)	252, 2994
SfuI	TTCGAA	2 cut(s)	566, 1441
SgrBI	CCGCGG	2 cut(s)	252, 2994
SinI	GGWCC	2 cut(s)	415, 1997
SmiMI	CAYNNNNRTG	1 cut(s)	1506
SmlI	CTYRAG	1 cut(s)	1125
SmoI	CTYRAG	1 cut(s)	1125
SspI	AATATT	4 cut(s)	310, 378, 1463, 2676
SspMI	CTAG	9 cut(s)	542, 584, 1218, 2030, 2286, 2400, 2528, 2781, 2873
SstI	GAGCTC	1 cut(s)	2941
StyD4I	CCNGG	9 cut(s)	37, 327, 388, 984, 1192, 1619, 1767, 2084, 2659
StyI	CCWWGG	1 cut(s)	2636
TaaI	ACNGT	6 cut(s)	186, 272, 1400, 1417, 1828, 1997
TaiI	ACGT	6 cut(s)	940, 1546, 1735, 1751, 2332, 2779
TaqII	GACCGA	2 cut(s)	933, 1554
TatI	WGTACW	1 cut(s)	2950
TauI	GCSGC	2 cut(s)	1337, 2128
TseFI	GTSAC	2 cut(s)	1247, 1984
TseI	GCWGC	3 cut(s)	863, 866, 1820
Tsp45I	GTSAC	2 cut(s)	1247, 1984
TspGWI	ACGGA	4 cut(s)	363, 438, 1269, 1679
VpaK11BI	GGWCC	2 cut(s)	415, 1997
VspI	ATTAAT	3 cut(s)	257, 2744, 3090
XbaI	TCTAGA	3 cut(s)	583, 2029, 2872
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1163
XmiI	GTMKAC	1 cut(s)	787
XmnI	GAANNNNTTC	5 cut(s)	1431, 2304, 3009, 3059, 3080
XspI	CTAG	9 cut(s)	542, 584, 1218, 2030, 2286, 2400, 2528, 2781, 2873
ZrmI	AGTACT	1 cut(s)	2952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.