rna polymerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00190 |
| malus_domestica | MD01G1093300.v1.1 MD16G1169300.v1.1 |
| pyrus_communis | pycom12397g00320 pycom14g07090 |
| rosa_chinensis | RchiOBHm_CPg0502401 |
| rosa_laevigata | RLG00000000047 RLG00000000087 RLG00000000116 RLG00000000175 RLG00000000231 RLG00000000246 RLG00000000284 RLG00000000299 RLG00000000300 RLG00000000314 RLG00000000318 RLG00000000340 |
| rosa_multiflora | Rmu_sc0002986.1_g000010 Rmu_sc0008812.1_g000013 Rmu_sc0011830.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00119070 |
| rosa_rugosa | Rorug02G0490800 RorugMtG0001900 |
| rosa_samantha | Rh2AG293900 Rh2AG294000 Rh2DG317800 Rh2DG317900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 162, 587, 789 |
| AccII | CGCG | 2 cut(s) | 343, 863 |
| AccIII | TCCGGA | 1 cut(s) | 25 |
| AciI | CCGC | 3 cut(s) | 386, 861, 863 |
| AclWI | GGATC | 5 cut(s) | 130, 143, 560, 573, 804 |
| AcsI | RAATTY | 1 cut(s) | 261 |
| AfaI | GTAC | 2 cut(s) | 822, 829 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 104, 145, 689, 705 |
| AgsI | TTSAA | 8 cut(s) | 75, 258, 322, 368, 453, 518, 575, 610 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 550, 582 |
| AluBI | AGCT | 3 cut(s) | 227, 809, 974 |
| AluI | AGCT | 3 cut(s) | 227, 809, 974 |
| Alw21I | GWGCWC | 1 cut(s) | 811 |
| AlwI | GGATC | 5 cut(s) | 130, 143, 560, 573, 804 |
| Ama87I | CYCGRG | 1 cut(s) | 377 |
| Aor13HI | TCCGGA | 1 cut(s) | 25 |
| AoxI | GGCC | 1 cut(s) | 696 |
| ApoI | RAATTY | 1 cut(s) | 261 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 31 |
| AseI | ATTAAT | 2 cut(s) | 614, 960 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 174, 879, 929, 950 |
| AspS9I | GGNCC | 1 cut(s) | 696 |
| AsuC2I | CCSGG | 1 cut(s) | 531 |
| AsuHPI | GGTGA | 1 cut(s) | 227 |
| AvaI | CYCGRG | 1 cut(s) | 377 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 509, 542 |
| BamHI | GGATCC | 2 cut(s) | 135, 565 |
| BanII | GRGCYC | 2 cut(s) | 742, 811 |
| BauI | CACGAG | 1 cut(s) | 890 |
| BbsI | GAAGAC | 3 cut(s) | 238, 307, 310 |
| Bbv12I | GWGCWC | 1 cut(s) | 811 |
| BccI | CCATC | 3 cut(s) | 126, 290, 545 |
| BciVI | GTATCC | 2 cut(s) | 76, 537 |
| BcnI | CCSGG | 1 cut(s) | 531 |
| BfaI | CTAG | 5 cut(s) | 156, 270, 398, 651, 743 |
| BfuI | GTATCC | 2 cut(s) | 76, 537 |
| BmcAI | AGTACT | 1 cut(s) | 822 |
| Bme1390I | CCNGG | 1 cut(s) | 531 |
| BmeT110I | CYCGRG | 1 cut(s) | 377 |
| BmgT120I | GGNCC | 1 cut(s) | 696 |
| BmiI | GGNNCC | 2 cut(s) | 137, 567 |
| BmrFI | CCNGG | 1 cut(s) | 531 |
| BmsI | GCATC | 2 cut(s) | 768, 856 |
| BpiI | GAAGAC | 3 cut(s) | 238, 307, 310 |
| BpuMI | CCSGG | 1 cut(s) | 531 |
| BsaJI | CCNNGG | 2 cut(s) | 506, 861 |
| BsaWI | WCCGGW | 1 cut(s) | 25 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 104, 145, 689, 705 |
| Bse1I | ACTGG | 2 cut(s) | 465, 486 |
| BseAI | TCCGGA | 1 cut(s) | 25 |
| BseDI | CCNNGG | 2 cut(s) | 506, 861 |
| BseGI | GGATG | 1 cut(s) | 871 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 104, 145, 689, 705 |
| BseMII | CTCAG | 2 cut(s) | 513, 933 |
| BseNI | ACTGG | 2 cut(s) | 465, 486 |
| Bsh1236I | CGCG | 2 cut(s) | 343, 863 |
| BshFI | GGCC | 1 cut(s) | 698 |
| BsiHKAI | GWGCWC | 1 cut(s) | 811 |
| BsiHKCI | CYCGRG | 1 cut(s) | 377 |
| BsiSI | CCGG | 2 cut(s) | 26, 530 |
| BslFI | GGGAC | 2 cut(s) | 723, 859 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 104, 145, 689, 705 |
| BsmFI | GGGAC | 2 cut(s) | 723, 859 |
| BsmI | GAATGC | 2 cut(s) | 57, 374 |
| BsnI | GGCC | 1 cut(s) | 698 |
| BsoBI | CYCGRG | 1 cut(s) | 377 |
| Bsp1286I | GDGCHC | 2 cut(s) | 742, 811 |
| Bsp13I | TCCGGA | 1 cut(s) | 25 |
| Bsp143I | GATC | 4 cut(s) | 135, 565, 796, 905 |
| Bsp19I | CCATGG | 1 cut(s) | 506 |
| Bsp68I | TCGCGA | 1 cut(s) | 343 |
| BspACI | CCGC | 3 cut(s) | 386, 861, 863 |
| BspANI | GGCC | 1 cut(s) | 698 |
| BspCNI | CTCAG | 2 cut(s) | 514, 934 |
| BspEI | TCCGGA | 1 cut(s) | 25 |
| BspFNI | CGCG | 2 cut(s) | 343, 863 |
| BspLI | GGNNCC | 2 cut(s) | 137, 567 |
| BspPI | GGATC | 5 cut(s) | 130, 143, 560, 573, 804 |
| BsrI | ACTGG | 2 cut(s) | 465, 486 |
| BssECI | CCNNGG | 2 cut(s) | 506, 861 |
| BssMI | GATC | 4 cut(s) | 135, 565, 796, 905 |
| BssSI | CACGAG | 1 cut(s) | 890 |
| BssT1I | CCWWGG | 1 cut(s) | 506 |
| Bst2BI | CACGAG | 1 cut(s) | 890 |
| BstDEI | CTNAG | 3 cut(s) | 522, 686, 942 |
| BstDSI | CCRYGG | 2 cut(s) | 506, 861 |
| BstF5I | GGATG | 1 cut(s) | 871 |
| BstFNI | CGCG | 2 cut(s) | 343, 863 |
| BstKTI | GATC | 4 cut(s) | 138, 568, 799, 908 |
| BstMBI | GATC | 4 cut(s) | 135, 565, 796, 905 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 289 |
| BstSCI | CCNGG | 1 cut(s) | 529 |
| BstUI | CGCG | 2 cut(s) | 343, 863 |
| BstV2I | GAAGAC | 3 cut(s) | 238, 307, 310 |
| BstX2I | RGATCY | 2 cut(s) | 135, 565 |
| BstYI | RGATCY | 2 cut(s) | 135, 565 |
| BsuI | GTATCC | 2 cut(s) | 76, 537 |
| BsuRI | GGCC | 1 cut(s) | 698 |
| BtgI | CCRYGG | 2 cut(s) | 506, 861 |
| BtsCI | GGATG | 1 cut(s) | 871 |
| BtuMI | TCGCGA | 1 cut(s) | 343 |
| Cfr13I | GGNCC | 1 cut(s) | 696 |
| Cfr42I | CCGCGG | 1 cut(s) | 864 |
| Csp6I | GTAC | 2 cut(s) | 821, 828 |
| CviAII | CATG | 3 cut(s) | 236, 507, 641 |
| CviQI | GTAC | 2 cut(s) | 821, 828 |
| DdeI | CTNAG | 3 cut(s) | 522, 686, 942 |
| DpnI | GATC | 4 cut(s) | 137, 567, 798, 907 |
| DpnII | GATC | 4 cut(s) | 135, 565, 796, 905 |
| Ecl136II | GAGCTC | 1 cut(s) | 809 |
| Eco130I | CCWWGG | 1 cut(s) | 506 |
| Eco24I | GRGCYC | 2 cut(s) | 742, 811 |
| Eco53kI | GAGCTC | 1 cut(s) | 809 |
| Eco88I | CYCGRG | 1 cut(s) | 377 |
| EcoICRI | GAGCTC | 1 cut(s) | 809 |
| EcoT14I | CCWWGG | 1 cut(s) | 506 |
| EcoT38I | GRGCYC | 2 cut(s) | 742, 811 |
| ErhI | CCWWGG | 1 cut(s) | 506 |
| FaeI | CATG | 3 cut(s) | 239, 510, 644 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 765, 797, 807, 839 |
| FaqI | GGGAC | 2 cut(s) | 723, 859 |
| FatI | CATG | 3 cut(s) | 235, 506, 640 |
| FauI | CCCGC | 2 cut(s) | 379, 868 |
| FauNDI | CATATG | 1 cut(s) | 19 |
| FokI | GGATG | 1 cut(s) | 878 |
| FriOI | GRGCYC | 2 cut(s) | 742, 811 |
| FspBI | CTAG | 5 cut(s) | 156, 270, 398, 651, 743 |
| HaeIII | GGCC | 1 cut(s) | 698 |
| HapII | CCGG | 2 cut(s) | 26, 530 |
| Hin1II | CATG | 3 cut(s) | 239, 510, 644 |
| HindIII | AAGCTT | 1 cut(s) | 972 |
| HinfI | GANTC | 4 cut(s) | 11, 175, 502, 875 |
| HpaII | CCGG | 2 cut(s) | 26, 530 |
| HphI | GGTGA | 1 cut(s) | 227 |
| Hpy166II | GTNNAC | 1 cut(s) | 656 |
| Hpy188I | TCNGA | 3 cut(s) | 472, 796, 943 |
| Hpy8I | GTNNAC | 1 cut(s) | 656 |
| HpyAV | CCTTC | 3 cut(s) | 348, 687, 961 |
| HpyCH4IV | ACGT | 2 cut(s) | 199, 646 |
| HpyCH4V | TGCA | 2 cut(s) | 292, 665 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 289 |
| HpyF3I | CTNAG | 3 cut(s) | 522, 686, 942 |
| HpySE526I | ACGT | 2 cut(s) | 199, 646 |
| Hsp92II | CATG | 3 cut(s) | 239, 510, 644 |
| Kpn2I | TCCGGA | 1 cut(s) | 25 |
| KspI | CCGCGG | 1 cut(s) | 864 |
| Kzo9I | GATC | 4 cut(s) | 135, 565, 796, 905 |
| LmnI | GCTCC | 2 cut(s) | 28, 874 |
| LweI | GCATC | 2 cut(s) | 768, 856 |
| MaeI | CTAG | 5 cut(s) | 156, 270, 398, 651, 743 |
| MaeII | ACGT | 2 cut(s) | 199, 646 |
| MaeIII | GTNAC | 1 cut(s) | 670 |
| MalI | GATC | 4 cut(s) | 137, 567, 798, 907 |
| MboI | GATC | 4 cut(s) | 135, 565, 796, 905 |
| MboII | GAAGA | 6 cut(s) | 41, 243, 310, 312, 567, 958 |
| MflI | RGATCY | 2 cut(s) | 135, 565 |
| MhlI | GDGCHC | 2 cut(s) | 742, 811 |
| MluCI | AATT | 5 cut(s) | 92, 261, 473, 611, 615 |
| MnlI | CCTC | 8 cut(s) | 104, 143, 383, 439, 683, 739, 836, 864 |
| MroI | TCCGGA | 1 cut(s) | 25 |
| MroXI | GAANNNNTTC | 4 cut(s) | 174, 879, 929, 950 |
| MseI | TTAA | 3 cut(s) | 614, 960, 976 |
| MspA1I | CMGCKG | 1 cut(s) | 863 |
| MspI | CCGG | 2 cut(s) | 26, 530 |
| MspR9I | CCNGG | 1 cut(s) | 531 |
| Mva1269I | GAATGC | 2 cut(s) | 57, 374 |
| MvnI | CGCG | 2 cut(s) | 343, 863 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 289 |
| NciI | CCSGG | 1 cut(s) | 531 |
| NcoI | CCATGG | 1 cut(s) | 506 |
| NdeI | CATATG | 1 cut(s) | 19 |
| NdeII | GATC | 4 cut(s) | 135, 565, 796, 905 |
| NlaIII | CATG | 3 cut(s) | 239, 510, 644 |
| NlaIV | GGNNCC | 2 cut(s) | 137, 567 |
| NruI | TCGCGA | 1 cut(s) | 343 |
| PctI | GAATGC | 2 cut(s) | 57, 374 |
| PdmI | GAANNNNTTC | 4 cut(s) | 174, 879, 929, 950 |
| PfeI | GAWTC | 4 cut(s) | 11, 175, 502, 875 |
| PfoI | TCCNGGA | 1 cut(s) | 529 |
| PshBI | ATTAAT | 2 cut(s) | 614, 960 |
| PsiI | TTATAA | 3 cut(s) | 162, 587, 789 |
| Psp124BI | GAGCTC | 1 cut(s) | 811 |
| PspN4I | GGNNCC | 2 cut(s) | 137, 567 |
| PspPI | GGNCC | 1 cut(s) | 696 |
| PsuI | RGATCY | 2 cut(s) | 135, 565 |
| RruI | TCGCGA | 1 cut(s) | 343 |
| RsaI | GTAC | 2 cut(s) | 822, 829 |
| RsaNI | GTAC | 2 cut(s) | 821, 828 |
| SacI | GAGCTC | 1 cut(s) | 811 |
| SacII | CCGCGG | 1 cut(s) | 864 |
| SaqAI | TTAA | 3 cut(s) | 614, 960, 976 |
| Sau3AI | GATC | 4 cut(s) | 135, 565, 796, 905 |
| Sau96I | GGNCC | 1 cut(s) | 696 |
| ScaI | AGTACT | 1 cut(s) | 822 |
| ScrFI | CCNGG | 1 cut(s) | 531 |
| SduI | GDGCHC | 2 cut(s) | 742, 811 |
| SfaNI | GCATC | 2 cut(s) | 768, 856 |
| Sfr303I | CCGCGG | 1 cut(s) | 864 |
| SgrBI | CCGCGG | 1 cut(s) | 864 |
| Sse9I | AATT | 5 cut(s) | 92, 261, 473, 611, 615 |
| SsiI | CCGC | 3 cut(s) | 386, 861, 863 |
| SspI | AATATT | 1 cut(s) | 546 |
| SspMI | CTAG | 5 cut(s) | 156, 270, 398, 651, 743 |
| SstI | GAGCTC | 1 cut(s) | 811 |
| StyD4I | CCNGG | 1 cut(s) | 529 |
| StyI | CCWWGG | 1 cut(s) | 506 |
| TaiI | ACGT | 2 cut(s) | 202, 649 |
| TaqI | TCGA | 3 cut(s) | 115, 412, 883 |
| TasI | AATT | 5 cut(s) | 92, 261, 473, 611, 615 |
| TatI | WGTACW | 1 cut(s) | 820 |
| TfiI | GAWTC | 4 cut(s) | 11, 175, 502, 875 |
| Tru1I | TTAA | 3 cut(s) | 614, 960, 976 |
| Tru9I | TTAA | 3 cut(s) | 614, 960, 976 |
| TspDTI | ATGAA | 4 cut(s) | 362, 453, 495, 608 |
| VspI | ATTAAT | 2 cut(s) | 614, 960 |
| XapI | RAATTY | 1 cut(s) | 261 |
| XbaI | TCTAGA | 1 cut(s) | 742 |
| XmnI | GAANNNNTTC | 4 cut(s) | 174, 879, 929, 950 |
| XspI | CTAG | 5 cut(s) | 156, 270, 398, 651, 743 |
| ZrmI | AGTACT | 1 cut(s) | 822 |