Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005882

Physical Location & Seq

Genomic Coordinates Forward (+)

50898736 .. 50901948

Gene Structure 3213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3213 bp

ATGCTTGGAGGTGGAAATGAGGCAATATCTACAATACCTGGATTTAATCAGATACAATTTGAAGGGTTTTGTAGGTTCATTGATCAGGGCTTAACAGAGGAACTTTATAAGTTTCCAAAAATTGAAGATACAGATCAAGAAATTGAATTTCAATTATTTGTGGAAACATATCAATTGGTAGAACCATTGATAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTTCGGAATTATATGTATCCGCGGGATTAATTTGGAAAAACAGTAGGGATATGCAAGAACAAACAATTTTTATTGGAAATATTCCTCTAATGAATTCCCTGGGAACTTCTATAGTAAACGGAATATACAGAATTGTGATCAATCAAATATTGCAAAGCCCTGGTATCTATTACCGGTCAGAACTGGACCATAACGGAATTTCAGTCTATACCGGCATCATAATATCAGATTGGGGAGGGAGATTAGAATTAGAGATTGATAGAAAAGCAAGGATATGGGCTCGTGTCAGTAGGAAACAAAAAATATCTATTCTAGTTCTATCATCAGCTATGGGTTCGAATCTAAGAGAAATTCTAGAGAATGCTCGCTACCCCGAAATTTTCTTGTCTTTCCTGAATGATAAGGAGAAAAAAAAAATCGGGTCAAAAGAAAATGCCATTTTGGAGTTTTATCAACAATTTGCTTGTGTAGGCGGAGATCCGGTAGTTTCTGAATCCTTATGTAAGGAATTACAAAAAAAATTCTTTCAACAAAGATGTGAGTTAGGAAGGATTGGTCGACGAAATATGAACCGAAGGCTGAATCTTGATATCCCTCAGAACAACACATTTTTGTTACCGCGAGATATATTGGCAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGACGATATGAATCATTTGAAAAATAAACGTATTCGGTCTGTCGCGGATCTTTTACAAGACCAATTCGGATTGGCCCTGGTTCGTTTAGAAAATATGGTTAGAGGGACTATATGCGGAGCAATTAAGCATAAATTGATACCCACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACCACTTATGAATCTTTTTTTGGATTACACCCATTATCTCAAGTTTTGGATCAAACTAATCCATTGACCCAAATAGTTCATGGGAGAAAATCGAGTTATCTGGGCCCTGGAGGATTGACGGGGCGAACTGCTAGTTTTCGGATACGAGATATTCACCCCAGTCACTACGGACGCATTTGCCCCATTGACACCTCTGAAGGAATCAATGTTGGACTTATTGGATCCTTAGCAATTCATGCGAAGATTGGTTATTGGGGGTCTCTAGAAAGTCCGTTTTATGAAATTTCTGAGAGATCAAAAAAAGTACGGATGCTTTATTTATCACCAAGTAAAGATGAATACTATATGATAGCGGCAGGAAATTCTTTGGCCTTGAATCGAGGTATTCAGGAAGAACAGGTTGTTCCAGCTCGATACCGTCAAGAATTCCTGACTGTTGAATGGGAACAGGTTCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTGATTCCTTTTATTGAGCATAATGATGCGAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCGCTCTCTCGGTCTGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTTTAGATTCCGGGGTTCCCGCTATAGCCGAACATGAGGGAAAGATCATTTATACGGATACTGACAAGATAATTTTATCGGGCAATGGGGATACTCTAAACATTCCATTAGTTATATACCAACGTTCCAACAAAAATACGTGTATGCACCAAAAACCCCAGGTTCAGCGAGGTAAATGTATTAAAAAGGGACAAATTTTAGCGGATGGTGCTGCTACGGTTGGTGGCGAACTCGCTTTGGGAAAAAATGTATTAGTAGCTTATATGCCGTGGGAGGGTTACAATTCTGAAGATGCGGTACTTATTAGTGAGCGTCTGGTATATGGAGATATTTATACTTCTTTTCACATAAGGAAATATGAAATTCAGACTCATGTGACAAGCAACGGTCCTGAAAGAATTACTAACGAAATACCACACCTAGAAGCCCATTTACTCCGCAATTTAGACAAAAATGGAATTGTGAGGCTGGGATCCTGGGTAAAGACGGGTGATATTTTAGTAGGTAAATTAACGCCGCAGATGGCGAAAGAATCGTCATATGCTCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAGGAAACTTGTCTAAAATTACCGATAGGTGGTAGAGGTCGAGTTATTGATGTAAGATGGATCCAGAAAAAGGGAGGTTCTAGTTATAATCCAGAAACGATTCGTGTATATATTTCACAAAAACGTGAAATCAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCGTTTCAAAAATTTTACCTAGACAAGATATGCCTTATTTGCAAGATGGAAGACCTGTTGATATGGTCTTCAACCCATTAGGAGTTCCTTCGCGAATGAATGTAGGACAGATATTTGAATGCTCACTCGGGTTAGCGGGAGGTCTGCTAGATAGACATTATCGAATAGCACCCTTTGATGAGAGATATGAACAAGAGGCTTCAAGAAAACTGGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCGAATCCATGGGTATTTGAACCTGAGTGTCCGGGAAAAAGCAGAATATTTGATGGAAGAACGGGGGATCCTTTTGAACAACCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACATGGACGTTCTAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGCAAGGGGGACAACGGGTAGGAGAAATGGAAGTTTGGGCTCTAGAGGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCGGATCATATTAGAGCTCGTCAAGAAGTACTTGGTACTACAATCATTGGAGGGACAATACCTCAACCCGCGGATGCTCCCGAATCTTTTCGATTGCTCGTGCGAGAACTACGATCTTTGGCTCTGGAACTGAACCATTTCCTTGTATCTGAGAAGAACTTCCAGATTAATAGGAAGGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006354 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1070

Amino Acids

120.47

Weight (kDa)

8.78

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	17 - 126	2.7e-06	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	128 - 315	7.4e-54	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	376 - 444	5.9e-23	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_6	PF00562	581 - 979	8.3e-104	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	981 - 1056	3.8e-22	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00190
malus_domestica	MD01G1093300.v1.1 MD16G1169300.v1.1
pyrus_communis	pycom12397g00320 pycom14g07090
rosa_chinensis	RchiOBHm_CPg0502401
rosa_laevigata	RLG00000000047 RLG00000000087 RLG00000000116 RLG00000000175 RLG00000000231 RLG00000000246 RLG00000000284 RLG00000000299 RLG00000000300 RLG00000000314 RLG00000000318 RLG00000000340
rosa_multiflora	Rmu_sc0002986.1_g000010 Rmu_sc0008812.1_g000013 Rmu_sc0011830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00119070
rosa_rugosa	Rorug02G0490800 RorugMtG0001900
rosa_samantha	Rh2AG293900 Rh2AG294000 Rh2DG317800 Rh2DG317900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	108, 2397, 2822, 3024
AccBSI	CCGCTC	1 cut(s)	1663
AccI	GTMKAC	1 cut(s)	787
AccII	CGCG	5 cut(s)	251, 850, 953, 2578, 3098
AccIII	TCCGGA	1 cut(s)	2260
AclI	AACGTT	1 cut(s)	1837
AcuI	CTGAAG	2 cut(s)	1302, 2022
AfaI	GTAC	5 cut(s)	904, 1392, 2013, 3057, 3064
AfiI	CCNNNNNNNGG	5 cut(s)	1988, 2339, 2380, 2924, 2940
AflIII	ACRYGT	1 cut(s)	1853
AgeI	ACCGGT	1 cut(s)	402
AjnI	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1872, 2189
AjuI	GAANNNNNNNTTGG	2 cut(s)	1089, 1121
AloI	GAACNNNNNNTCC	2 cut(s)	2785, 2817
AluBI	AGCT	9 cut(s)	557, 866, 1496, 1583, 1625, 1973, 2462, 3044, 3209
AluI	AGCT	9 cut(s)	557, 866, 1496, 1583, 1625, 1973, 2462, 3044, 3209
Alw21I	GWGCWC	1 cut(s)	3046
Alw26I	GTCTC	1 cut(s)	1350
Ama87I	CYCGRG	1 cut(s)	2612
Aor13HI	TCCGGA	1 cut(s)	2260
AoxI	GGCC	4 cut(s)	981, 1189, 1455, 2931
ApaI	GGGCCC	1 cut(s)	1193
ApeKI	GCWGC	3 cut(s)	863, 866, 1925
ArsI	GACNNNNNNTTYG	2 cut(s)	2234, 2266
AseI	ATTAAT	3 cut(s)	257, 2849, 3195
AsiGI	ACCGGT	1 cut(s)	402
Asp700I	GAANNNNTTC	5 cut(s)	1536, 2409, 3114, 3164, 3185
AspS9I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 2102, 2931
AsuC2I	CCSGG	2 cut(s)	1726, 2766
AsuHPI	GGTGA	4 cut(s)	1232, 1401, 2216, 2462
AsuII	TTCGAA	2 cut(s)	566, 1546
AvaI	CYCGRG	1 cut(s)	2612
AvaII	GGWCC	2 cut(s)	415, 2102
BaeGI	GKGCMC	1 cut(s)	1193
BamHI	GGATCC	4 cut(s)	1307, 2186, 2370, 2800
BanII	GRGCYC	4 cut(s)	511, 1193, 2977, 3046
BarI	GAAGNNNNNNTAC	4 cut(s)	1995, 2027, 2130, 2162
BauI	CACGAG	2 cut(s)	510, 3125
BbsI	GAAGAC	3 cut(s)	2473, 2542, 2545
Bbv12I	GWGCWC	1 cut(s)	3046
BbvI	GCAGC	3 cut(s)	853, 875, 1912
BccI	CCATC	5 cut(s)	1913, 2230, 2361, 2525, 2780
BceAI	ACGGC	1 cut(s)	1966
BciT130I	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2191
BciVI	GTATCC	5 cut(s)	256, 1221, 1765, 1798, 2311
BclI	TGATCA	2 cut(s)	82, 366
BcnI	CCSGG	2 cut(s)	1726, 2766
BcoDI	GTCTC	1 cut(s)	1350
BfmI	CTRYAG	2 cut(s)	339, 1737
BfuI	GTATCC	5 cut(s)	256, 1221, 1765, 1798, 2311
BisI	GCNGC	5 cut(s)	864, 867, 1440, 1926, 2231
BlsI	GCNGC	5 cut(s)	865, 868, 1441, 1927, 2232
BmcAI	AGTACT	1 cut(s)	3057
Bme1390I	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1726, 1874, 2191, 2766
Bme18I	GGWCC	2 cut(s)	415, 2102
BmeT110I	CYCGRG	1 cut(s)	2612
BmgT120I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 2102, 2931
BmiI	GGNNCC	6 cut(s)	1191, 1309, 1731, 2188, 2372, 2802
BmrFI	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1726, 1874, 2191, 2766
BmrI	ACTGGG	2 cut(s)	1239, 1704
BmsI	GCATC	7 cut(s)	193, 453, 1386, 1603, 1996, 3003, 3091
BmuI	ACTGGG	2 cut(s)	1239, 1704
BpiI	GAAGAC	3 cut(s)	2473, 2542, 2545
BpmI	CTGGAG	1 cut(s)	1215
Bpu10I	CCTNAGC	1 cut(s)	1312
Bpu14I	TTCGAA	2 cut(s)	566, 1546
BpuEI	CTTGAG	1 cut(s)	1110
BpuMI	CCSGG	2 cut(s)	1726, 2766
BsaAI	YACGTR	1 cut(s)	1854
BsaBI	GATNNNNATC	3 cut(s)	132, 918, 1617
BsaI	GGTCTC	1 cut(s)	1350
BsaWI	WCCGGW	3 cut(s)	402, 709, 2260
BsaXI	ACNNNNNCTCC	4 cut(s)	696, 726, 1060, 1090
Bsc4I	CCNNNNNNNGG	5 cut(s)	1988, 2339, 2380, 2924, 2940
Bse118I	RCCGGY	2 cut(s)	402, 440
Bse1I	ACTGG	5 cut(s)	417, 1245, 1699, 2700, 2721
Bse3DI	GCAATG	1 cut(s)	1804
Bse8I	GATNNNNATC	3 cut(s)	132, 918, 1617
BseAI	TCCGGA	1 cut(s)	2260
BseBI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2191
BseGI	GGATG	3 cut(s)	1401, 1924, 3106
BseJI	GATNNNNATC	3 cut(s)	132, 918, 1617
BseLI	CCNNNNNNNGG	5 cut(s)	1988, 2339, 2380, 2924, 2940
BseMI	GCAATG	1 cut(s)	1804
BseMII	CTCAG	5 cut(s)	839, 1070, 1365, 2748, 3168
BseNI	ACTGG	5 cut(s)	417, 1245, 1699, 2700, 2721
BseRI	GAGGAG	1 cut(s)	1044
BseSI	GKGCMC	1 cut(s)	1193
BseXI	GCAGC	3 cut(s)	853, 875, 1912
BseYI	CCCAGC	1 cut(s)	2182
Bsh1236I	CGCG	5 cut(s)	251, 850, 953, 2578, 3098
BshFI	GGCC	4 cut(s)	983, 1191, 1457, 2933
BshTI	ACCGGT	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	3046
BsiHKCI	CYCGRG	1 cut(s)	2612
BsiSI	CCGG	6 cut(s)	403, 441, 710, 1725, 2261, 2765
BslFI	GGGAC	4 cut(s)	1027, 1917, 2958, 3094
BslI	CCNNNNNNNGG	5 cut(s)	1988, 2339, 2380, 2924, 2940
BsmAI	GTCTC	1 cut(s)	1350
BsmFI	GGGAC	4 cut(s)	1027, 1917, 2958, 3094
BsmI	GAATGC	3 cut(s)	595, 2292, 2609
BsnI	GGCC	4 cut(s)	983, 1191, 1457, 2933
Bso31I	GGTCTC	1 cut(s)	1350
BsoBI	CYCGRG	1 cut(s)	2612
Bsp119I	TTCGAA	2 cut(s)	566, 1546
Bsp120I	GGGCCC	1 cut(s)	1189
Bsp1286I	GDGCHC	4 cut(s)	511, 1193, 2977, 3046
Bsp13I	TCCGGA	1 cut(s)	2260
Bsp19I	CCATGG	1 cut(s)	2741
Bsp68I	TCGCGA	1 cut(s)	2578
BspANI	GGCC	4 cut(s)	983, 1191, 1457, 2933
BspCNI	CTCAG	5 cut(s)	838, 1069, 1366, 2749, 3169
BspEI	TCCGGA	1 cut(s)	2260
BspFNI	CGCG	5 cut(s)	251, 850, 953, 2578, 3098
BspLI	GGNNCC	6 cut(s)	1191, 1309, 1731, 2188, 2372, 2802
BspT104I	TTCGAA	2 cut(s)	566, 1546
BspTNI	GGTCTC	1 cut(s)	1350
BsrBI	CCGCTC	1 cut(s)	1663
BsrDI	GCAATG	1 cut(s)	1804
BsrFI	RCCGGY	2 cut(s)	402, 440
BsrI	ACTGG	5 cut(s)	417, 1245, 1699, 2700, 2721
BssAI	RCCGGY	2 cut(s)	402, 440
BssSI	CACGAG	2 cut(s)	510, 3125
BssT1I	CCWWGG	1 cut(s)	2741
Bst2BI	CACGAG	2 cut(s)	510, 3125
Bst2UI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2191
Bst4CI	ACNGT	5 cut(s)	272, 1505, 1522, 1933, 2102
BstAPI	GCANNNNNTGC	1 cut(s)	1322
BstBAI	YACGTR	1 cut(s)	1854
BstBI	TTCGAA	2 cut(s)	566, 1546
BstC8I	GCNNGC	1 cut(s)	595
BstDEI	CTNAG	8 cut(s)	572, 825, 1056, 1312, 1374, 2757, 2921, 3177
BstDSI	CCRYGG	4 cut(s)	249, 1982, 2741, 3096
BstF5I	GGATG	3 cut(s)	1401, 1924, 3106
BstFNI	CGCG	5 cut(s)	251, 850, 953, 2578, 3098
BstMAI	GTCTC	1 cut(s)	1350
BstMWI	GCNNNNNNNGC	4 cut(s)	1322, 1622, 1922, 2524
BstNI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2191
BstSCI	CCNGG	9 cut(s)	37, 327, 388, 984, 1192, 1724, 1872, 2189, 2764
BstSFI	CTRYAG	2 cut(s)	339, 1737
BstSLI	GKGCMC	1 cut(s)	1193
BstUI	CGCG	5 cut(s)	251, 850, 953, 2578, 3098
BstV1I	GCAGC	3 cut(s)	853, 875, 1912
BstV2I	GAAGAC	3 cut(s)	2473, 2542, 2545
BstX2I	RGATCY	6 cut(s)	706, 955, 1307, 2186, 2370, 2800
BstYI	RGATCY	6 cut(s)	706, 955, 1307, 2186, 2370, 2800
BsuI	GTATCC	5 cut(s)	256, 1221, 1765, 1798, 2311
BsuRI	GGCC	4 cut(s)	983, 1191, 1457, 2933
BtgI	CCRYGG	4 cut(s)	249, 1982, 2741, 3096
BtsCI	GGATG	3 cut(s)	1401, 1924, 3106
BtuMI	TCGCGA	1 cut(s)	2578
Cac8I	GCNNGC	1 cut(s)	595
Cfr10I	RCCGGY	2 cut(s)	402, 440
Cfr13I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 2102, 2931
Cfr42I	CCGCGG	2 cut(s)	252, 3099
CseI	GACGC	2 cut(s)	1266, 2015
Csp6I	GTAC	5 cut(s)	903, 1391, 2012, 3056, 3063
CspAI	ACCGGT	1 cut(s)	402
CviAII	CATG	7 cut(s)	1166, 1322, 1748, 2087, 2471, 2742, 2876
CviQI	GTAC	5 cut(s)	903, 1391, 2012, 3056, 3063
DdeI	CTNAG	8 cut(s)	572, 825, 1056, 1312, 1374, 2757, 2921, 3177
EciI	GGCGGA	1 cut(s)	717
Ecl136II	GAGCTC	1 cut(s)	3044
Eco130I	CCWWGG	1 cut(s)	2741
Eco24I	GRGCYC	4 cut(s)	511, 1193, 2977, 3046
Eco31I	GGTCTC	1 cut(s)	1350
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	2 cut(s)	415, 2102
Eco53kI	GAGCTC	1 cut(s)	3044
Eco57I	CTGAAG	2 cut(s)	1302, 2022
Eco88I	CYCGRG	1 cut(s)	2612
EcoICRI	GAGCTC	1 cut(s)	3044
EcoO109I	RGGNCCY	1 cut(s)	1190
EcoRI	GAATTC	2 cut(s)	322, 1511
EcoRII	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1872, 2189
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	1 cut(s)	2741
EcoT38I	GRGCYC	4 cut(s)	511, 1193, 2977, 3046
ErhI	CCWWGG	1 cut(s)	2741
FaeI	CATG	7 cut(s)	1169, 1325, 1751, 2090, 2474, 2745, 2879
FalI	AAGNNNNNCTT	4 cut(s)	3000, 3032, 3042, 3074
FaqI	GGGAC	4 cut(s)	1027, 1917, 2958, 3094
FatI	CATG	7 cut(s)	1165, 1321, 1747, 2086, 2470, 2741, 2875
FauI	CCCGC	4 cut(s)	244, 1741, 2614, 3103
FauNDI	CATATG	1 cut(s)	2254
FbaI	TGATCA	2 cut(s)	82, 366
FblI	GTMKAC	1 cut(s)	787
Fnu4HI	GCNGC	5 cut(s)	864, 867, 1440, 1926, 2231
FokI	GGATG	3 cut(s)	1408, 1931, 3113
FriOI	GRGCYC	4 cut(s)	511, 1193, 2977, 3046
Fsp4HI	GCNGC	5 cut(s)	864, 867, 1440, 1926, 2231
GluI	GCNGC	5 cut(s)	864, 867, 1440, 1926, 2231
GsaI	CCCAGC	1 cut(s)	2186
GsuI	CTGGAG	1 cut(s)	1215
HaeIII	GGCC	4 cut(s)	983, 1191, 1457, 2933
HapII	CCGG	6 cut(s)	403, 441, 710, 1725, 2261, 2765
HgaI	GACGC	2 cut(s)	1266, 2015
Hin1II	CATG	7 cut(s)	1169, 1325, 1751, 2090, 2474, 2745, 2879
HincII	GTYRAC	1 cut(s)	788
HindII	GTYRAC	1 cut(s)	788
HindIII	AAGCTT	1 cut(s)	3207
HpaII	CCGG	6 cut(s)	403, 441, 710, 1725, 2261, 2765
HphI	GGTGA	4 cut(s)	1232, 1401, 2216, 2462
Hpy166II	GTNNAC	4 cut(s)	346, 788, 905, 2891
Hpy8I	GTNNAC	4 cut(s)	346, 788, 905, 2891
Hpy99I	CGWCG	1 cut(s)	792
HpyAV	CCTTC	8 cut(s)	56, 771, 798, 1277, 1570, 2583, 2922, 3196
HpyCH4III	ACNGT	5 cut(s)	272, 1505, 1522, 1933, 2102
HpyCH4IV	ACGT	6 cut(s)	937, 1648, 1837, 1853, 2434, 2881
HpyCH4V	TGCA	7 cut(s)	283, 382, 1645, 1683, 1861, 2527, 2900
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1322, 1622, 1922, 2524
HpyF3I	CTNAG	8 cut(s)	572, 825, 1056, 1312, 1374, 2757, 2921, 3177
HpySE526I	ACGT	6 cut(s)	937, 1648, 1837, 1853, 2434, 2881
Hsp92II	CATG	7 cut(s)	1169, 1325, 1751, 2090, 2474, 2745, 2879
Kpn2I	TCCGGA	1 cut(s)	2260
Ksp22I	TGATCA	2 cut(s)	82, 366
KspI	CCGCGG	2 cut(s)	252, 3099
LmnI	GCTCC	4 cut(s)	1025, 1580, 2263, 3109
Lsp1109I	GCAGC	3 cut(s)	853, 875, 1912
LweI	GCATC	7 cut(s)	193, 453, 1386, 1603, 1996, 3003, 3091
MaeII	ACGT	6 cut(s)	937, 1648, 1837, 1853, 2434, 2881
MaeIII	GTNAC	6 cut(s)	843, 1066, 1247, 1991, 2089, 2905
MbiI	CCGCTC	1 cut(s)	1663
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	6 cut(s)	706, 955, 1307, 2186, 2370, 2800
MhlI	GDGCHC	4 cut(s)	511, 1193, 2977, 3046
MlyI	GAGTC	1 cut(s)	2077
MmeI	TCCRAC	4 cut(s)	1276, 1669, 1680, 1866
MroI	TCCGGA	1 cut(s)	2260
MroXI	GAANNNNTTC	5 cut(s)	1536, 2409, 3114, 3164, 3185
MslI	CAYNNNNRTG	1 cut(s)	1611
MspA1I	CMGCKG	3 cut(s)	251, 866, 3098
MspI	CCGG	6 cut(s)	403, 441, 710, 1725, 2261, 2765
MspR9I	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1726, 1874, 2191, 2766
MunI	CAATTG	1 cut(s)	173
Mva1269I	GAATGC	3 cut(s)	595, 2292, 2609
MvaI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2191
MvnI	CGCG	5 cut(s)	251, 850, 953, 2578, 3098
MwoI	GCNNNNNNNGC	4 cut(s)	1322, 1622, 1922, 2524
NciI	CCSGG	2 cut(s)	1726, 2766
NcoI	CCATGG	1 cut(s)	2741
NdeI	CATATG	1 cut(s)	2254
NlaIII	CATG	7 cut(s)	1169, 1325, 1751, 2090, 2474, 2745, 2879
NlaIV	GGNNCC	6 cut(s)	1191, 1309, 1731, 2188, 2372, 2802
NmuCI	GTSAC	2 cut(s)	1247, 2089
NruI	TCGCGA	1 cut(s)	2578
NspV	TTCGAA	2 cut(s)	566, 1546
PasI	CCCWGGG	1 cut(s)	328
PctI	GAATGC	3 cut(s)	595, 2292, 2609
PdmI	GAANNNNTTC	5 cut(s)	1536, 2409, 3114, 3164, 3185
PfoI	TCCNGGA	1 cut(s)	2764
PinAI	ACCGGT	1 cut(s)	402
PkrI	GCNGC	5 cut(s)	865, 868, 1441, 1927, 2232
PleI	GAGTC	1 cut(s)	2077
PpsI	GAGTC	1 cut(s)	2077
Ppu21I	YACGTR	1 cut(s)	1854
PshBI	ATTAAT	3 cut(s)	257, 2849, 3195
PsiI	TTATAA	4 cut(s)	108, 2397, 2822, 3024
Psp124BI	GAGCTC	1 cut(s)	3046
Psp1406I	AACGTT	1 cut(s)	1837
Psp6I	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1872, 2189
PspFI	CCCAGC	1 cut(s)	2182
PspGI	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1872, 2189
PspN4I	GGNNCC	6 cut(s)	1191, 1309, 1731, 2188, 2372, 2802
PspOMI	GGGCCC	1 cut(s)	1189
PspPI	GGNCC	6 cut(s)	415, 982, 1189, 1190, 2102, 2931
PsuI	RGATCY	6 cut(s)	706, 955, 1307, 2186, 2370, 2800
PvuII	CAGCTG	1 cut(s)	866
RruI	TCGCGA	1 cut(s)	2578
RsaI	GTAC	5 cut(s)	904, 1392, 2013, 3057, 3064
RsaNI	GTAC	5 cut(s)	903, 1391, 2012, 3056, 3063
RseI	CAYNNNNRTG	1 cut(s)	1611
SacI	GAGCTC	1 cut(s)	3046
SacII	CCGCGG	2 cut(s)	252, 3099
SalI	GTCGAC	1 cut(s)	786
SatI	GCNGC	5 cut(s)	864, 867, 1440, 1926, 2231
Sau96I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 2102, 2931
ScaI	AGTACT	1 cut(s)	3057
SchI	GAGTC	1 cut(s)	2077
ScrFI	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1726, 1874, 2191, 2766
SduI	GDGCHC	4 cut(s)	511, 1193, 2977, 3046
SfaNI	GCATC	7 cut(s)	193, 453, 1386, 1603, 1996, 3003, 3091
SfcI	CTRYAG	2 cut(s)	339, 1737
Sfr303I	CCGCGG	2 cut(s)	252, 3099
SfuI	TTCGAA	2 cut(s)	566, 1546
SgrBI	CCGCGG	2 cut(s)	252, 3099
SinI	GGWCC	2 cut(s)	415, 2102
SmiMI	CAYNNNNRTG	1 cut(s)	1611
SmlI	CTYRAG	1 cut(s)	1125
SmoI	CTYRAG	1 cut(s)	1125
SspI	AATATT	4 cut(s)	310, 378, 1568, 2781
SstI	GAGCTC	1 cut(s)	3046
StyD4I	CCNGG	9 cut(s)	37, 327, 388, 984, 1192, 1724, 1872, 2189, 2764
StyI	CCWWGG	1 cut(s)	2741
TaaI	ACNGT	5 cut(s)	272, 1505, 1522, 1933, 2102
TaiI	ACGT	6 cut(s)	940, 1651, 1840, 1856, 2437, 2884
TaqII	GACCGA	2 cut(s)	933, 1659
TatI	WGTACW	1 cut(s)	3055
TauI	GCSGC	2 cut(s)	1442, 2233
TseFI	GTSAC	2 cut(s)	1247, 2089
TseI	GCWGC	3 cut(s)	863, 866, 1925
Tsp45I	GTSAC	2 cut(s)	1247, 2089
TspGWI	ACGGA	6 cut(s)	363, 438, 1269, 1347, 1408, 1784
VpaK11BI	GGWCC	2 cut(s)	415, 2102
VspI	ATTAAT	3 cut(s)	257, 2849, 3195
XbaI	TCTAGA	3 cut(s)	583, 1348, 2977
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1163
XmiI	GTMKAC	1 cut(s)	787
XmnI	GAANNNNTTC	5 cut(s)	1536, 2409, 3114, 3164, 3185
ZrmI	AGTACT	1 cut(s)	3057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.