Rmu_sc0002986.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002986.1
OG0005882
Physical Location & Seq
Forward (+)
34856 .. 41589
6734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002986.1_g000010.1.cds

Sequence Viewer

Length: 582 bp
atgccaaacaacttccctcgtgctcgcctcgaccttgcgcagctgctagtggcatccttgagttgcggcaaggccagcagcggcggcggaaagcctgtttcgtttttaggccgatttgaagtcgatcctaatttctcgagctaccggccaccaaaactcgagattcttgactcattagactcggctcaacttgacctaatccctaatggggacggggatggggaatccccagtttcttattatggggttattatggggattggggcgggtaaagggatgaggaatgaagtcggcttgaggagcaccagattacagcccagaccgatggtatctccactttccggccaacaccaaacatcagacaggcatcgttcgattcctctcggcatggcgaactggagctcggtcgtccctgctccgaacgacaggcgatggaggcaggaagaagcccgaaaacttctcaggttcaccggcgggttttcctattccggcttggtcatagtgtttcactggtgtcagaagcttcctttcgacctcgtcgacctatccaaagtgttggtttgtccagatgataagacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.18

Weight (kDa)

9.1

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 39
AccI GTMKAC 1 cut(s) 540
AciI CCGC 6 cut(s) 66, 81, 84, 87, 266, 474
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 2 cut(s) 146, 343
AfiI CCNNNNNNNGG 2 cut(s) 208, 341
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 4 cut(s) 43, 141, 402, 523
AluI AGCT 4 cut(s) 43, 141, 402, 523
Alw21I GWGCWC 3 cut(s) 25, 305, 404
AlwI GGATC 1 cut(s) 119
Ama87I CYCGRG 2 cut(s) 136, 158
AoxI GGCC 4 cut(s) 72, 109, 146, 343
ApeKI GCWGC 3 cut(s) 40, 43, 78
AspLEI GCGC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 460
AvaI CYCGRG 2 cut(s) 136, 158
BanII GRGCYC 1 cut(s) 404
BauI CACGAG 1 cut(s) 18
Bbv12I GWGCWC 3 cut(s) 25, 305, 404
BbvI GCAGC 3 cut(s) 30, 52, 90
BccI CCATC 3 cut(s) 212, 319, 426
BfaI CTAG 1 cut(s) 47
BisI GCNGC 6 cut(s) 41, 44, 67, 79, 82, 85
BlsI GCNGC 6 cut(s) 42, 45, 68, 80, 83, 86
BmeT110I CYCGRG 2 cut(s) 136, 158
BmrI ACTGGG 1 cut(s) 224
BmsI GCATC 2 cut(s) 62, 376
BmuI ACTGGG 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 418
BpuEI CTTGAG 2 cut(s) 79, 316
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 341
Bse118I RCCGGY 2 cut(s) 144, 470
Bse1I ACTGG 3 cut(s) 230, 401, 515
BseGI GGATG 3 cut(s) 53, 223, 282
BseLI CCNNNNNNNGG 2 cut(s) 208, 341
BseMII CTCAG 1 cut(s) 475
BseNI ACTGG 3 cut(s) 230, 401, 515
BseRI GAGGAG 1 cut(s) 313
BseXI GCAGC 3 cut(s) 30, 52, 90
Bsh1285I CGRYCG 1 cut(s) 408
BshFI GGCC 4 cut(s) 74, 111, 148, 345
BsiEI CGRYCG 1 cut(s) 408
BsiHKAI GWGCWC 3 cut(s) 25, 305, 404
BsiHKCI CYCGRG 2 cut(s) 136, 158
BsiSI CCGG 4 cut(s) 145, 342, 471, 489
BslFI GGGAC 2 cut(s) 224, 395
BslI CCNNNNNNNGG 2 cut(s) 208, 341
BsmFI GGGAC 2 cut(s) 224, 395
BsnI GGCC 4 cut(s) 74, 111, 148, 345
BsoBI CYCGRG 2 cut(s) 136, 158
Bsp1286I GDGCHC 3 cut(s) 25, 305, 404
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 6 cut(s) 66, 81, 84, 87, 266, 474
BspANI GGCC 4 cut(s) 74, 111, 148, 345
BspCNI CTCAG 1 cut(s) 474
BspPI GGATC 1 cut(s) 119
BsrFI RCCGGY 2 cut(s) 144, 470
BsrI ACTGG 3 cut(s) 230, 401, 515
BssAI RCCGGY 2 cut(s) 144, 470
BssMI GATC 1 cut(s) 124
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 25, 76
BstDEI CTNAG 1 cut(s) 461
BstF5I GGATG 3 cut(s) 53, 223, 282
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstMCI CGRYCG 1 cut(s) 408
BstMWI GCNNNNNNNGC 4 cut(s) 75, 84, 300, 436
BstV1I GCAGC 3 cut(s) 30, 52, 90
BstXI CCANNNNNNTGG 2 cut(s) 325, 556
BsuRI GGCC 4 cut(s) 74, 111, 148, 345
BtgZI GCGATG 1 cut(s) 445
BtsCI GGATG 3 cut(s) 53, 223, 282
BtsIMutI CAGTG 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 25, 76
CfoI GCGC 1 cut(s) 40
Cfr10I RCCGGY 2 cut(s) 144, 470
CviAII CATG 2 cut(s) 388, 579
DdeI CTNAG 1 cut(s) 461
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
EaeI YGGCCR 2 cut(s) 146, 343
EciI GGCGGA 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 404
Eco53kI GAGCTC 1 cut(s) 402
Eco88I CYCGRG 2 cut(s) 136, 158
EcoICRI GAGCTC 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 404
FaeI CATG 2 cut(s) 391, 582
FaiI YATR 5 cut(s) 243, 254, 389, 500, 580
FaqI GGGAC 2 cut(s) 224, 395
FatI CATG 2 cut(s) 387, 578
FauI CCCGC 2 cut(s) 259, 467
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 6 cut(s) 41, 44, 67, 79, 82, 85
FokI GGATG 3 cut(s) 40, 230, 289
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 6 cut(s) 41, 44, 67, 79, 82, 85
FspBI CTAG 1 cut(s) 47
FspI TGCGCA 1 cut(s) 39
GlaI GCGC 1 cut(s) 39
GluI GCNGC 6 cut(s) 41, 44, 67, 79, 82, 85
GsuI CTGGAG 1 cut(s) 418
HaeIII GGCC 4 cut(s) 74, 111, 148, 345
HapII CCGG 4 cut(s) 145, 342, 471, 489
HhaI GCGC 1 cut(s) 40
Hin1II CATG 2 cut(s) 391, 582
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 5 cut(s) 163, 170, 179, 224, 376
HpaII CCGG 4 cut(s) 145, 342, 471, 489
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 2 cut(s) 468, 541
Hpy188I TCNGA 3 cut(s) 361, 420, 519
Hpy188III TCNNGA 4 cut(s) 136, 160, 167, 566
Hpy8I GTNNAC 2 cut(s) 468, 541
Hpy99I CGWCG 1 cut(s) 542
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 84, 300, 436
HpyF3I CTNAG 1 cut(s) 461
Hsp92II CATG 2 cut(s) 391, 582
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 3 cut(s) 300, 399, 421
Lsp1109I GCAGC 3 cut(s) 30, 52, 90
LweI GCATC 2 cut(s) 62, 376
MaeI CTAG 1 cut(s) 47
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 455
MhlI GDGCHC 3 cut(s) 25, 305, 404
MluCI AATT 1 cut(s) 130
MlyI GAGTC 2 cut(s) 164, 173
MnlI CCTC 7 cut(s) 27, 38, 273, 291, 390, 429, 545
MspA1I CMGCKG 2 cut(s) 43, 81
MspI CCGG 4 cut(s) 145, 342, 471, 489
MwoI GCNNNNNNNGC 4 cut(s) 75, 84, 300, 436
NdeII GATC 1 cut(s) 124
NlaIII CATG 2 cut(s) 391, 582
NmeAIII GCCGAG 2 cut(s) 161, 363
NsbI TGCGCA 1 cut(s) 39
PaeR7I CTCGAG 2 cut(s) 136, 158
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PfeI GAWTC 3 cut(s) 163, 224, 376
PflFI GACNNNGTC 1 cut(s) 536
PkrI GCNGC 6 cut(s) 42, 45, 68, 80, 83, 86
PleI GAGTC 2 cut(s) 164, 173
PpsI GAGTC 2 cut(s) 164, 173
Psp124BI GAGCTC 1 cut(s) 404
PsyI GACNNNGTC 1 cut(s) 536
PvuII CAGCTG 1 cut(s) 43
SacI GAGCTC 1 cut(s) 404
SalI GTCGAC 1 cut(s) 539
SatI GCNGC 6 cut(s) 41, 44, 67, 79, 82, 85
Sau3AI GATC 1 cut(s) 124
SchI GAGTC 2 cut(s) 164, 173
SduI GDGCHC 3 cut(s) 25, 305, 404
SetI ASST 9 cut(s) 36, 45, 143, 198, 404, 467, 525, 537, 546
SfaNI GCATC 2 cut(s) 62, 376
Sfr274I CTCGAG 2 cut(s) 136, 158
SgrAI CRCCGGYG 1 cut(s) 470
SlaI CTCGAG 2 cut(s) 136, 158
SmlI CTYRAG 4 cut(s) 58, 136, 158, 295
SmoI CTYRAG 4 cut(s) 58, 136, 158, 295
Sse9I AATT 1 cut(s) 130
SsiI CCGC 6 cut(s) 66, 81, 84, 87, 266, 474
SspMI CTAG 1 cut(s) 47
SstI GAGCTC 1 cut(s) 404
TaqI TCGA 7 cut(s) 30, 123, 137, 159, 374, 531, 540
TaqII GACCGA 2 cut(s) 337, 394
TasI AATT 1 cut(s) 130
TauI GCSGC 3 cut(s) 69, 84, 87
TfiI GAWTC 3 cut(s) 163, 224, 376
TscAI CASTG 1 cut(s) 515
TseI GCWGC 3 cut(s) 40, 43, 78
TspDTI ATGAA 1 cut(s) 300
TspRI CASTG 1 cut(s) 515
Tth111I GACNNNGTC 1 cut(s) 536
XhoI CTCGAG 2 cut(s) 136, 158
XmiI GTMKAC 1 cut(s) 540
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.