Rmu_sc0011830.1_g000003

rna polymerase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011830.1
Physical Location & Seq
Reverse (-)
12257 .. 14608
2352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011830.1_g000003.1.cds

Sequence Viewer

Length: 1119 bp
atggtgccacccagaggagatgagtacggcaccactaccatggatggtggtatggtgacgccacaaaggtggcataatggtgtcataggtcatggacgtggaattattgagaccaatgacattgaaccttactccgttgaagaattccaacgtagagaaaattggcctaaatggaaagatgtgatccaggttaaattggattcactaacgaagaggaaggatttcaggcctgagatgccaacacctcctaacataaaacatgttgacaataatagagctcgtcgatacgagttcgtgcatatgcggaacgcaagaattggagttcacacgaagaagttatcgcgtttggaaaagtttccatttttgcccgagccgaaaacagggcaaggagtctccagctccgttctccctcctccggccaccacaccaaaccacctcccacggcttcgtcttgaccttgcgcagctgccagtggtaaccttgctccgtggcacagcttgtagcagcggcaagaagcttgtttccatttccggccgttttgagtgcgtagtgaatatctcgagctaccggccaccaaaactctatattcttggctcattacactcgcctaaacattctgaacaagcaccaagaaggcccggacctggggagatcgatttcacactcgtcggaggcttggcccaccaaaactctatattcttggctcattacactcgcctaaacattctgaacaagcaccaagaaggcccggacctggggagatcgatttcacgctcgtcggagacttggccgttttctgcaaattttccggccaaaccgaactgtttgagaggaagggccaagcaagggggacaacgggtaggagaaatggaagtttgggctctagagggatttggtgttgctcatattttacaagagatgcttacttataaatcggatcatattagagctcgtcaagaagtacttggtactacaatcattggagggacaatacctcaacccgcggatgctcccgaatcttttcgattgctcgtgcgagaactacgatctttggctctggaactgaaccatttccttgtatctgagaagaacttccagattaataggaaggaagcttaa

Protein Analysis

372

Amino Acids

41.91

Weight (kDa)

9.85

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 930
Acc16I TGCGCA 1 cut(s) 462
AccB1I GGYRCC 2 cut(s) 4, 29
AccII CGCG 2 cut(s) 343, 1004
AciI CCGC 4 cut(s) 304, 507, 1002, 1004
AclWI GGATC 2 cut(s) 178, 945
AcoI YGGCCR 5 cut(s) 417, 532, 569, 788, 810
AcsI RAATTY 2 cut(s) 143, 802
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 3 cut(s) 26, 963, 970
AfiI CCNNNNNNNGG 8 cut(s) 14, 380, 415, 644, 645, 754, 755, 846
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 2 cut(s) 125, 140
AjiI CACGTC 1 cut(s) 98
AjnI CCWGG 3 cut(s) 186, 643, 753
AleI CACNNNNGTG 1 cut(s) 67
AluBI AGCT 8 cut(s) 278, 399, 466, 497, 517, 564, 950, 1115
AluI AGCT 8 cut(s) 278, 399, 466, 497, 517, 564, 950, 1115
Alw21I GWGCWC 2 cut(s) 280, 952
Alw26I GTCTC 3 cut(s) 104, 397, 776
AlwI GGATC 2 cut(s) 178, 945
Ama87I CYCGRG 2 cut(s) 368, 559
ApeKI GCWGC 3 cut(s) 463, 466, 504
ApoI RAATTY 2 cut(s) 143, 802
AseI ATTAAT 1 cut(s) 1101
Asp700I GAANNNNTTC 5 cut(s) 221, 354, 1020, 1070, 1091
AspLEI GCGC 1 cut(s) 463
AspS9I GGNCC 6 cut(s) 636, 641, 679, 746, 751, 837
AsuC2I CCSGG 2 cut(s) 639, 749
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 2 cut(s) 368, 559
AvaII GGWCC 2 cut(s) 641, 751
BanI GGYRCC 2 cut(s) 4, 29
BanII GRGCYC 3 cut(s) 280, 883, 952
BauI CACGAG 1 cut(s) 1031
Bbv12I GWGCWC 2 cut(s) 280, 952
BbvI GCAGC 3 cut(s) 453, 475, 516
BccI CCATC 1 cut(s) 38
BceAI ACGGC 4 cut(s) 43, 458, 519, 775
BciT130I CCWGG 3 cut(s) 188, 645, 755
BcnI CCSGG 2 cut(s) 639, 749
BcoDI GTCTC 3 cut(s) 104, 397, 776
BfaI CTAG 1 cut(s) 884
BisI GCNGC 4 cut(s) 464, 467, 505, 508
BlsI GCNGC 4 cut(s) 465, 468, 506, 509
BmcAI AGTACT 1 cut(s) 963
Bme1390I CCNGG 5 cut(s) 188, 639, 645, 749, 755
Bme18I GGWCC 2 cut(s) 641, 751
BmeT110I CYCGRG 2 cut(s) 368, 559
BmgBI CACGTC 1 cut(s) 98
BmgT120I GGNCC 6 cut(s) 636, 641, 679, 746, 751, 837
BmiI GGNNCC 2 cut(s) 6, 31
BmrFI CCNGG 5 cut(s) 188, 639, 645, 749, 755
BmsI GCATC 3 cut(s) 225, 909, 997
BpmI CTGGAG 1 cut(s) 379
BpuMI CCSGG 2 cut(s) 639, 749
Bsa29I ATCGAT 2 cut(s) 654, 764
BsaHI GRCGYC 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 6 cut(s) 39, 440, 487, 644, 754, 1002
Bsc4I CCNNNNNNNGG 8 cut(s) 14, 380, 415, 644, 645, 754, 755, 846
Bse118I RCCGGY 1 cut(s) 567
Bse1I ACTGG 1 cut(s) 470
BseBI CCWGG 3 cut(s) 188, 645, 755
BseCI ATCGAT 2 cut(s) 654, 764
BseDI CCNNGG 6 cut(s) 39, 440, 487, 644, 754, 1002
BseGI GGATG 2 cut(s) 49, 1012
BseLI CCNNNNNNNGG 8 cut(s) 14, 380, 415, 644, 645, 754, 755, 846
BseMII CTCAG 2 cut(s) 222, 1074
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 2 cut(s) 30, 402
BseX3I CGGCCG 1 cut(s) 532
BseXI GCAGC 3 cut(s) 453, 475, 516
Bsh1236I CGCG 2 cut(s) 343, 1004
Bsh1285I CGRYCG 1 cut(s) 535
BshNI GGYRCC 2 cut(s) 4, 29
BshVI ATCGAT 2 cut(s) 654, 764
BsiEI CGRYCG 1 cut(s) 535
BsiHKAI GWGCWC 2 cut(s) 280, 952
BsiHKCI CYCGRG 2 cut(s) 368, 559
BsiSI CCGG 6 cut(s) 416, 531, 568, 639, 749, 809
BslFI GGGAC 2 cut(s) 864, 1000
BslI CCNNNNNNNGG 8 cut(s) 14, 380, 415, 644, 645, 754, 755, 846
BsmAI GTCTC 3 cut(s) 104, 397, 776
BsmFI GGGAC 2 cut(s) 864, 1000
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 2 cut(s) 368, 559
Bsp1286I GDGCHC 3 cut(s) 280, 883, 952
Bsp143I GATC 5 cut(s) 183, 651, 761, 937, 1046
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 4 cut(s) 304, 507, 1002, 1004
BspCNI CTCAG 2 cut(s) 223, 1075
BspDI ATCGAT 2 cut(s) 654, 764
BspFNI CGCG 2 cut(s) 343, 1004
BspLI GGNNCC 2 cut(s) 6, 31
BspPI GGATC 2 cut(s) 178, 945
BspT107I GGYRCC 2 cut(s) 4, 29
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 567
BsrI ACTGG 1 cut(s) 470
BssAI RCCGGY 1 cut(s) 567
BssECI CCNNGG 6 cut(s) 39, 440, 487, 644, 754, 1002
BssMI GATC 5 cut(s) 183, 651, 761, 937, 1046
BssNI GRCGYC 1 cut(s) 59
BssSI CACGAG 1 cut(s) 1031
BssT1I CCWWGG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 1031
Bst2UI CCWGG 3 cut(s) 188, 645, 755
Bst4CI ACNGT 1 cut(s) 824
Bst6I CTCTTC 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 59
BstDEI CTNAG 2 cut(s) 231, 1083
BstDSI CCRYGG 4 cut(s) 39, 440, 487, 1002
BstEII GGTNACC 1 cut(s) 475
BstF5I GGATG 2 cut(s) 49, 1012
BstFNI CGCG 2 cut(s) 343, 1004
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 5 cut(s) 186, 654, 764, 940, 1049
BstMAI GTCTC 3 cut(s) 104, 397, 776
BstMBI GATC 5 cut(s) 183, 651, 761, 937, 1046
BstMCI CGRYCG 1 cut(s) 535
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 3 cut(s) 188, 645, 755
BstNSI RCATGY 1 cut(s) 263
BstPI GGTNACC 1 cut(s) 475
BstSCI CCNGG 5 cut(s) 186, 637, 643, 747, 753
BstUI CGCG 2 cut(s) 343, 1004
BstV1I GCAGC 3 cut(s) 453, 475, 516
BstXI CCANNNNNNTGG 2 cut(s) 40, 69
BstZI CGGCCG 1 cut(s) 532
Bsu15I ATCGAT 2 cut(s) 654, 764
BsuTUI ATCGAT 2 cut(s) 654, 764
BtgI CCRYGG 4 cut(s) 39, 440, 487, 1002
BtrI CACGTC 1 cut(s) 98
BtsCI GGATG 2 cut(s) 49, 1012
BtsIMutI CAGTG 1 cut(s) 477
CfoI GCGC 1 cut(s) 463
Cfr10I RCCGGY 1 cut(s) 567
Cfr13I GGNCC 6 cut(s) 636, 641, 679, 746, 751, 837
Cfr42I CCGCGG 1 cut(s) 1005
ClaI ATCGAT 2 cut(s) 654, 764
CseI GACGC 1 cut(s) 67
Csp6I GTAC 3 cut(s) 25, 962, 969
CviAII CATG 3 cut(s) 40, 92, 260
CviQI GTAC 3 cut(s) 25, 962, 969
DdeI CTNAG 2 cut(s) 231, 1083
DpnI GATC 5 cut(s) 185, 653, 763, 939, 1048
DpnII GATC 5 cut(s) 183, 651, 761, 937, 1046
EaeI YGGCCR 5 cut(s) 417, 532, 569, 788, 810
EagI CGGCCG 1 cut(s) 532
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Ecl136II GAGCTC 2 cut(s) 278, 950
EclXI CGGCCG 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 229
Eco24I GRGCYC 3 cut(s) 280, 883, 952
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 2 cut(s) 641, 751
Eco52I CGGCCG 1 cut(s) 532
Eco53kI GAGCTC 2 cut(s) 278, 950
Eco88I CYCGRG 2 cut(s) 368, 559
Eco91I GGTNACC 1 cut(s) 475
EcoICRI GAGCTC 2 cut(s) 278, 950
EcoO65I GGTNACC 1 cut(s) 475
EcoRI GAATTC 1 cut(s) 143
EcoRII CCWGG 3 cut(s) 186, 643, 753
EcoT14I CCWWGG 1 cut(s) 39
EcoT38I GRGCYC 3 cut(s) 280, 883, 952
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 3 cut(s) 43, 95, 263
FalI AAGNNNNNCTT 4 cut(s) 906, 938, 948, 980
FaqI GGGAC 2 cut(s) 864, 1000
FatI CATG 3 cut(s) 39, 91, 259
FauI CCCGC 1 cut(s) 1009
FauNDI CATATG 1 cut(s) 300
Fnu4HI GCNGC 4 cut(s) 464, 467, 505, 508
FokI GGATG 2 cut(s) 56, 1019
FriOI GRGCYC 3 cut(s) 280, 883, 952
Fsp4HI GCNGC 4 cut(s) 464, 467, 505, 508
FspBI CTAG 1 cut(s) 884
FspI TGCGCA 1 cut(s) 462
GlaI GCGC 1 cut(s) 462
GluI GCNGC 4 cut(s) 464, 467, 505, 508
GsuI CTGGAG 1 cut(s) 379
HapII CCGG 6 cut(s) 416, 531, 568, 639, 749, 809
HgaI GACGC 1 cut(s) 67
HhaI GCGC 1 cut(s) 463
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 3 cut(s) 43, 95, 263
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 2 cut(s) 515, 1113
HinfI GANTC 3 cut(s) 200, 390, 1016
HpaII CCGG 6 cut(s) 416, 531, 568, 639, 749, 809
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 265, 325
Hpy188I TCNGA 6 cut(s) 619, 671, 729, 781, 937, 1084
Hpy188III TCNNGA 7 cut(s) 452, 559, 884, 956, 1013, 1058, 1096
Hpy8I GTNNAC 2 cut(s) 265, 325
Hpy99I CGWCG 3 cut(s) 285, 671, 781
HpyAV CCTTC 5 cut(s) 211, 627, 737, 828, 1102
HpyCH4III ACNGT 1 cut(s) 824
HpyCH4IV ACGT 2 cut(s) 97, 151
HpyCH4V TGCA 2 cut(s) 298, 800
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 2 cut(s) 231, 1083
HpySE526I ACGT 2 cut(s) 97, 151
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 3 cut(s) 43, 95, 263
HspAI GCGC 1 cut(s) 461
KspI CCGCGG 1 cut(s) 1005
Kzo9I GATC 5 cut(s) 183, 651, 761, 937, 1046
LmnI GCTCC 3 cut(s) 404, 489, 1015
Lsp1109I GCAGC 3 cut(s) 453, 475, 516
LweI GCATC 3 cut(s) 225, 909, 997
MaeI CTAG 1 cut(s) 884
MaeII ACGT 2 cut(s) 97, 151
MaeIII GTNAC 2 cut(s) 55, 475
MalI GATC 5 cut(s) 185, 653, 763, 939, 1048
MboI GATC 5 cut(s) 183, 651, 761, 937, 1046
MboII GAAGA 4 cut(s) 152, 223, 343, 1099
MhlI GDGCHC 3 cut(s) 280, 883, 952
MluCI AATT 6 cut(s) 102, 143, 160, 194, 315, 802
MlyI GAGTC 1 cut(s) 399
MmeI TCCRAC 3 cut(s) 172, 649, 759
MroXI GAANNNNTTC 5 cut(s) 221, 354, 1020, 1070, 1091
MseI TTAA 3 cut(s) 192, 1101, 1117
MslI CAYNNNNRTG 4 cut(s) 38, 67, 78, 96
MspA1I CMGCKG 3 cut(s) 466, 507, 1004
MspI CCGG 6 cut(s) 416, 531, 568, 639, 749, 809
MspR9I CCNGG 5 cut(s) 188, 639, 645, 749, 755
MvaI CCWGG 3 cut(s) 188, 645, 755
MvnI CGCG 2 cut(s) 343, 1004
MwoI GCNNNNNNNGC 1 cut(s) 235
NciI CCSGG 2 cut(s) 639, 749
NcoI CCATGG 1 cut(s) 39
NdeI CATATG 1 cut(s) 300
NdeII GATC 5 cut(s) 183, 651, 761, 937, 1046
NlaIII CATG 3 cut(s) 43, 95, 263
NlaIV GGNNCC 2 cut(s) 6, 31
NmuCI GTSAC 1 cut(s) 55
NsbI TGCGCA 1 cut(s) 462
NspI RCATGY 1 cut(s) 263
OliI CACNNNNGTG 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 559
PceI AGGCCT 1 cut(s) 229
PciI ACATGT 1 cut(s) 259
PdmI GAANNNNTTC 5 cut(s) 221, 354, 1020, 1070, 1091
PfeI GAWTC 2 cut(s) 200, 1016
PkrI GCNGC 4 cut(s) 465, 468, 506, 509
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PscI ACATGT 1 cut(s) 259
PshBI ATTAAT 1 cut(s) 1101
PsiI TTATAA 1 cut(s) 930
Psp124BI GAGCTC 2 cut(s) 280, 952
Psp6I CCWGG 3 cut(s) 186, 643, 753
PspEI GGTNACC 1 cut(s) 475
PspGI CCWGG 3 cut(s) 186, 643, 753
PspN4I GGNNCC 2 cut(s) 6, 31
PspPI GGNCC 6 cut(s) 636, 641, 679, 746, 751, 837
PvuII CAGCTG 1 cut(s) 466
RsaI GTAC 3 cut(s) 26, 963, 970
RsaNI GTAC 3 cut(s) 25, 962, 969
RseI CAYNNNNRTG 4 cut(s) 38, 67, 78, 96
SacI GAGCTC 2 cut(s) 280, 952
SacII CCGCGG 1 cut(s) 1005
SaqAI TTAA 3 cut(s) 192, 1101, 1117
SatI GCNGC 4 cut(s) 464, 467, 505, 508
Sau3AI GATC 5 cut(s) 183, 651, 761, 937, 1046
Sau96I GGNCC 6 cut(s) 636, 641, 679, 746, 751, 837
ScaI AGTACT 1 cut(s) 963
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 5 cut(s) 188, 639, 645, 749, 755
SduI GDGCHC 3 cut(s) 280, 883, 952
SfaNI GCATC 3 cut(s) 225, 909, 997
Sfr274I CTCGAG 1 cut(s) 559
Sfr303I CCGCGG 1 cut(s) 1005
SgrBI CCGCGG 1 cut(s) 1005
SinI GGWCC 2 cut(s) 641, 751
SlaI CTCGAG 1 cut(s) 559
SmiMI CAYNNNNRTG 4 cut(s) 38, 67, 78, 96
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
Sse9I AATT 6 cut(s) 102, 143, 160, 194, 315, 802
SseBI AGGCCT 1 cut(s) 229
SsiI CCGC 4 cut(s) 304, 507, 1002, 1004
SspMI CTAG 1 cut(s) 884
SstI GAGCTC 2 cut(s) 280, 952
StuI AGGCCT 1 cut(s) 229
StyD4I CCNGG 5 cut(s) 186, 637, 643, 747, 753
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 824
TaiI ACGT 2 cut(s) 100, 154
TaqI TCGA 5 cut(s) 283, 560, 654, 764, 1024
TasI AATT 6 cut(s) 102, 143, 160, 194, 315, 802
TatI WGTACW 1 cut(s) 961
TauI GCSGC 1 cut(s) 510
TfiI GAWTC 2 cut(s) 200, 1016
Tru1I TTAA 3 cut(s) 192, 1101, 1117
Tru9I TTAA 3 cut(s) 192, 1101, 1117
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 463, 466, 504
Tsp45I GTSAC 1 cut(s) 55
TspGWI ACGGA 3 cut(s) 124, 391, 476
TspRI CASTG 1 cut(s) 477
VpaK11BI GGWCC 2 cut(s) 641, 751
VspI ATTAAT 1 cut(s) 1101
XapI RAATTY 2 cut(s) 143, 802
XbaI TCTAGA 1 cut(s) 883
XceI RCATGY 1 cut(s) 263
XhoI CTCGAG 1 cut(s) 559
XmnI GAANNNNTTC 5 cut(s) 221, 354, 1020, 1070, 1091
XspI CTAG 1 cut(s) 884
ZrmI AGTACT 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.