Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005882

Physical Location & Seq

Genomic Coordinates Forward (+)

178541 .. 180959

Gene Structure 2419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000246

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2355 bp

ATGAACCGAAGGCTGAATCTTGATATCCCTCAGAACAACACATTTTTGTTACCGCGAGATATATTGGCAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGACGATATGAATCATTTGAAAAATAAACGTATTCGGTCTGTCGCGGATCTTTTACAAGACCAATTCGGATTGGCCCTGGTTCGTTTAGAAAATATGGTTAGAGGGACTATATGCGGAGCAATTAAGCATAAATTGATACCCACGTCCTCAGAATTTGTTTTGGATCAAACTAATCCATTGACCCAAATAGTTCATGGGAGAAAATCGAGTTATCTGGGCCCTGGAGGATTGACAGGGCGAACTGCTAGTTTTCGGATACGAGATATTCACCCCAGTCACTACGGACGCATTTGCCCCATTGACACCTCTGAAGGAATCAATGTTGGACTTATTGGATCCTTAGCAATTCATGCGAAGATTGGTTATTGGGGGTCTCTAGAAAGTCCGTTTTATGAAATTTCTGAGAGATCAAAAAAAGTACGGATGCTTTATTTATCACCAAGTAAAGATGAATACTATATGATAGCGGCAGGAAATTCTTTGGCCTTGAATCGAGGTATTCAGGAAGAACAGGTTGTTCCAGCTCGATACCGTCAAGAATTCCTGACTGTTGAATGGGAACAGGTTCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTGATTCCTTTTATTGAGCATAATGATGCGAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCGCTCTCTCGGTCTGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTTTAGATTCCGGGGTTCCCGCTATAGCCGAACATGAGGGAAAGATCATTTATACGGATACTGACAAGATAATTTTATCGGGCAATGGGGATACTCTAAACATTCCATTAGTTATATACCAACGTTCCAACAAAAATACGTGTATGCACCAAAAACCCCAGGTTCAGCGAGGTAAATGTATTAAAAAGGGACAAATTTTAGCGGATGGTGCTGCTACGGTTGGTGGCGAACTCGCTTTGGGAAAAAATGTATTAGTAGCTTATATGCCGTGGGAGGGTTACAATTCTGAAGATGCGGTACTTATTAGTGAGCGTCTGGTATATGGAGATATTTATACTTCTTTTCACATAAGGAAATATGAAATTCAGACTCATGTGACAAGCAACGGTCCTGAAAGAATTACTAACGAAATACCACATCTAGAAGCCCATTTACTCCGCAATTTAGACAAAAATGGAATTGTGAGGCTGGGATCCTGGGTAAAGACGGGTGATATTTTAGTAGGTAAATTAACGCCGCAGATGGCGAAAGAATCGTCATATGCTCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAGGAAACTTGTCTAAAATTACCGATAGGTGGTAGAGGTCGAGTTATTGATGTAAGATGGATCCAGAAAAAGGGAGGTTCTAGTTATAATCCAGAAACGATTCGTGTATATATTTCACAAAAACGTGAAATCAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCGTTTCAAAAATTTTACCTAGACAAGATATGCCTTATTTGCAAGATGGAAGACCTGTTGATATGGTCTTCAACCCATTAGGAGTTCCTTCGCGAATGAATGTAGGACAGATATTTGAATGCTCACTCGGGTTAGCGGGAGGTCTGCTAGATAGACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCAAGAAAACTGGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCGAATCCATGGGTATTTGAACCTGAGTATCCGGGAAAAAGCAGAATATTTGATGGAAGAACGGGGGATCCTTTTGAACAACCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACATGGACGTTCTAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGCAAGGGGGACAACGGGTAGGAGAAATGGAAGTTTGGGCTCTAGAGGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCGGATCATATTAGAGCTCGTCAAGAAGTACTTGGTACTACAATCATTGGAGGGACAATACCTCAACCCGCGGATGCTCCCGAATCTTTTCGATTGCTCGTGCGAGAACTACGATCTTTGGCTCTGGAACTGAACCATTTCCTTGTATCTGAGAAGAACTTCCAGATTAATAGGAAGGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006354 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

785

Amino Acids

87.83

Weight (kDa)

9.2

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_2	PF04561	1 - 50	1.5e-12	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	91 - 158	1.7e-22	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_6	PF00562	295 - 693	3.8e-104	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	695 - 770	2.5e-22	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00190
malus_domestica	MD01G1093300.v1.1 MD16G1169300.v1.1
pyrus_communis	pycom12397g00320 pycom14g07090
rosa_chinensis	RchiOBHm_CPg0502401
rosa_laevigata	RLG00000000047 RLG00000000087 RLG00000000116 RLG00000000175 RLG00000000231 RLG00000000246 RLG00000000284 RLG00000000299 RLG00000000300 RLG00000000314 RLG00000000318 RLG00000000340
rosa_multiflora	Rmu_sc0002986.1_g000010 Rmu_sc0008812.1_g000013 Rmu_sc0011830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00119070
rosa_rugosa	Rorug02G0490800 RorugMtG0001900
rosa_samantha	Rh2AG293900 Rh2AG294000 Rh2DG317800 Rh2DG317900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1539, 1964, 2166
AccBSI	CCGCTC	1 cut(s)	805
AccII	CGCG	4 cut(s)	55, 158, 1720, 2240
AccIII	TCCGGA	1 cut(s)	1402
AclI	AACGTT	1 cut(s)	979
AcsI	RAATTY	8 cut(s)	95, 266, 510, 589, 653, 1050, 1218, 1638
AcuI	CTGAAG	2 cut(s)	444, 1164
AfaI	GTAC	5 cut(s)	109, 534, 1155, 2199, 2206
AfiI	CCNNNNNNNGG	5 cut(s)	1130, 1481, 1522, 2066, 2082
AflIII	ACRYGT	1 cut(s)	995
AjiI	CACGTC	1 cut(s)	258
AjnI	CCWGG	4 cut(s)	189, 334, 1014, 1331
AloI	GAACNNNNNNTCC	2 cut(s)	1927, 1959
AluBI	AGCT	8 cut(s)	71, 638, 725, 767, 1115, 1604, 2186, 2351
AluI	AGCT	8 cut(s)	71, 638, 725, 767, 1115, 1604, 2186, 2351
Alw21I	GWGCWC	1 cut(s)	2188
Alw26I	GTCTC	1 cut(s)	492
Ama87I	CYCGRG	1 cut(s)	1754
Aor13HI	TCCGGA	1 cut(s)	1402
AoxI	GGCC	4 cut(s)	186, 331, 597, 2073
ApaI	GGGCCC	1 cut(s)	335
ApeKI	GCWGC	3 cut(s)	68, 71, 1067
ApoI	RAATTY	8 cut(s)	95, 266, 510, 589, 653, 1050, 1218, 1638
ArsI	GACNNNNNNTTYG	2 cut(s)	1376, 1408
AseI	ATTAAT	2 cut(s)	1991, 2337
Asp700I	GAANNNNTTC	5 cut(s)	678, 1551, 2256, 2306, 2327
AspS9I	GGNCC	5 cut(s)	187, 331, 332, 1244, 2073
AsuC2I	CCSGG	2 cut(s)	868, 1908
AsuHPI	GGTGA	4 cut(s)	374, 543, 1358, 1604
AsuII	TTCGAA	1 cut(s)	688
AvaI	CYCGRG	1 cut(s)	1754
AvaII	GGWCC	1 cut(s)	1244
BaeGI	GKGCMC	1 cut(s)	335
BaeI	ACNNNNGTAYC	4 cut(s)	242, 275, 1886, 1919
BamHI	GGATCC	4 cut(s)	449, 1328, 1512, 1942
BanII	GRGCYC	3 cut(s)	335, 2119, 2188
BarI	GAAGNNNNNNTAC	4 cut(s)	1137, 1169, 1272, 1304
BauI	CACGAG	1 cut(s)	2267
BbsI	GAAGAC	3 cut(s)	1615, 1684, 1687
Bbv12I	GWGCWC	1 cut(s)	2188
BbvI	GCAGC	3 cut(s)	58, 80, 1054
BccI	CCATC	5 cut(s)	1055, 1372, 1503, 1667, 1922
BceAI	ACGGC	1 cut(s)	1108
BciT130I	CCWGG	4 cut(s)	191, 336, 1016, 1333
BciVI	GTATCC	5 cut(s)	363, 907, 940, 1453, 1914
BcnI	CCSGG	2 cut(s)	868, 1908
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	8 cut(s)	360, 491, 1277, 1533, 1647, 1775, 2028, 2120
BfmI	CTRYAG	1 cut(s)	879
BfuI	GTATCC	5 cut(s)	363, 907, 940, 1453, 1914
BisI	GCNGC	5 cut(s)	69, 72, 582, 1068, 1373
BlsI	GCNGC	5 cut(s)	70, 73, 583, 1069, 1374
BmcAI	AGTACT	1 cut(s)	2199
Bme1390I	CCNGG	6 cut(s)	191, 336, 868, 1016, 1333, 1908
Bme18I	GGWCC	1 cut(s)	1244
BmeT110I	CYCGRG	1 cut(s)	1754
BmgBI	CACGTC	1 cut(s)	258
BmgT120I	GGNCC	5 cut(s)	187, 331, 332, 1244, 2073
BmiI	GGNNCC	6 cut(s)	333, 451, 873, 1330, 1514, 1944
BmrFI	CCNGG	6 cut(s)	191, 336, 868, 1016, 1333, 1908
BmrI	ACTGGG	2 cut(s)	381, 846
BmsI	GCATC	5 cut(s)	528, 745, 1138, 2145, 2233
BmuI	ACTGGG	2 cut(s)	381, 846
BpiI	GAAGAC	3 cut(s)	1615, 1684, 1687
BpmI	CTGGAG	1 cut(s)	357
Bpu10I	CCTNAGC	1 cut(s)	454
Bpu14I	TTCGAA	1 cut(s)	688
BpuMI	CCSGG	2 cut(s)	868, 1908
BsaAI	YACGTR	1 cut(s)	996
BsaBI	GATNNNNATC	2 cut(s)	123, 759
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	8 cut(s)	189, 334, 867, 1014, 1124, 1332, 1883, 2238
BsaWI	WCCGGW	1 cut(s)	1402
Bsc4I	CCNNNNNNNGG	5 cut(s)	1130, 1481, 1522, 2066, 2082
Bse1I	ACTGG	4 cut(s)	387, 841, 1842, 1863
Bse3DI	GCAATG	1 cut(s)	946
Bse8I	GATNNNNATC	2 cut(s)	123, 759
BseAI	TCCGGA	1 cut(s)	1402
BseBI	CCWGG	4 cut(s)	191, 336, 1016, 1333
BseDI	CCNNGG	8 cut(s)	189, 334, 867, 1014, 1124, 1332, 1883, 2238
BseGI	GGATG	3 cut(s)	543, 1066, 2248
BseJI	GATNNNNATC	2 cut(s)	123, 759
BseLI	CCNNNNNNNGG	5 cut(s)	1130, 1481, 1522, 2066, 2082
BseMI	GCAATG	1 cut(s)	946
BseMII	CTCAG	5 cut(s)	44, 276, 507, 1890, 2310
BseNI	ACTGG	4 cut(s)	387, 841, 1842, 1863
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	58, 80, 1054
BseYI	CCCAGC	1 cut(s)	1324
Bsh1236I	CGCG	4 cut(s)	55, 158, 1720, 2240
BshFI	GGCC	4 cut(s)	188, 333, 599, 2075
BsiHKAI	GWGCWC	1 cut(s)	2188
BsiHKCI	CYCGRG	1 cut(s)	1754
BsiSI	CCGG	3 cut(s)	867, 1403, 1907
BslFI	GGGAC	4 cut(s)	232, 1059, 2100, 2236
BslI	CCNNNNNNNGG	5 cut(s)	1130, 1481, 1522, 2066, 2082
BsmAI	GTCTC	1 cut(s)	492
BsmFI	GGGAC	4 cut(s)	232, 1059, 2100, 2236
BsmI	GAATGC	2 cut(s)	1434, 1751
BsnI	GGCC	4 cut(s)	188, 333, 599, 2075
Bso31I	GGTCTC	1 cut(s)	492
BsoBI	CYCGRG	1 cut(s)	1754
Bsp119I	TTCGAA	1 cut(s)	688
Bsp120I	GGGCCC	1 cut(s)	331
Bsp1286I	GDGCHC	3 cut(s)	335, 2119, 2188
Bsp13I	TCCGGA	1 cut(s)	1402
Bsp19I	CCATGG	1 cut(s)	1883
Bsp68I	TCGCGA	1 cut(s)	1720
BspANI	GGCC	4 cut(s)	188, 333, 599, 2075
BspCNI	CTCAG	5 cut(s)	43, 275, 508, 1891, 2311
BspEI	TCCGGA	1 cut(s)	1402
BspFNI	CGCG	4 cut(s)	55, 158, 1720, 2240
BspLI	GGNNCC	6 cut(s)	333, 451, 873, 1330, 1514, 1944
BspT104I	TTCGAA	1 cut(s)	688
BspTNI	GGTCTC	1 cut(s)	492
BsrBI	CCGCTC	1 cut(s)	805
BsrDI	GCAATG	1 cut(s)	946
BsrI	ACTGG	4 cut(s)	387, 841, 1842, 1863
BssECI	CCNNGG	8 cut(s)	189, 334, 867, 1014, 1124, 1332, 1883, 2238
BssSI	CACGAG	1 cut(s)	2267
BssT1I	CCWWGG	1 cut(s)	1883
Bst2BI	CACGAG	1 cut(s)	2267
Bst2UI	CCWGG	4 cut(s)	191, 336, 1016, 1333
Bst4CI	ACNGT	4 cut(s)	647, 664, 1075, 1244
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	996
BstBI	TTCGAA	1 cut(s)	688
BstDEI	CTNAG	7 cut(s)	30, 262, 454, 516, 1899, 2063, 2319
BstDSI	CCRYGG	3 cut(s)	1124, 1883, 2238
BstF5I	GGATG	3 cut(s)	543, 1066, 2248
BstFNI	CGCG	4 cut(s)	55, 158, 1720, 2240
BstMAI	GTCTC	1 cut(s)	492
BstMWI	GCNNNNNNNGC	4 cut(s)	464, 764, 1064, 1666
BstNI	CCWGG	4 cut(s)	191, 336, 1016, 1333
BstSCI	CCNGG	6 cut(s)	189, 334, 866, 1014, 1331, 1906
BstSFI	CTRYAG	1 cut(s)	879
BstSLI	GKGCMC	1 cut(s)	335
BstUI	CGCG	4 cut(s)	55, 158, 1720, 2240
BstV1I	GCAGC	3 cut(s)	58, 80, 1054
BstV2I	GAAGAC	3 cut(s)	1615, 1684, 1687
BstX2I	RGATCY	5 cut(s)	160, 449, 1328, 1512, 1942
BstYI	RGATCY	5 cut(s)	160, 449, 1328, 1512, 1942
BsuI	GTATCC	5 cut(s)	363, 907, 940, 1453, 1914
BsuRI	GGCC	4 cut(s)	188, 333, 599, 2075
BtgI	CCRYGG	3 cut(s)	1124, 1883, 2238
BtrI	CACGTC	1 cut(s)	258
BtsCI	GGATG	3 cut(s)	543, 1066, 2248
BtuMI	TCGCGA	1 cut(s)	1720
Cfr13I	GGNCC	5 cut(s)	187, 331, 332, 1244, 2073
Cfr42I	CCGCGG	1 cut(s)	2241
CseI	GACGC	2 cut(s)	408, 1157
Csp6I	GTAC	5 cut(s)	108, 533, 1154, 2198, 2205
CviAII	CATG	7 cut(s)	308, 464, 890, 1229, 1613, 1884, 2018
CviQI	GTAC	5 cut(s)	108, 533, 1154, 2198, 2205
DdeI	CTNAG	7 cut(s)	30, 262, 454, 516, 1899, 2063, 2319
Ecl136II	GAGCTC	1 cut(s)	2186
Eco130I	CCWWGG	1 cut(s)	1883
Eco24I	GRGCYC	3 cut(s)	335, 2119, 2188
Eco31I	GGTCTC	1 cut(s)	492
Eco32I	GATATC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	1244
Eco53kI	GAGCTC	1 cut(s)	2186
Eco57I	CTGAAG	2 cut(s)	444, 1164
Eco88I	CYCGRG	1 cut(s)	1754
EcoICRI	GAGCTC	1 cut(s)	2186
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	653
EcoRII	CCWGG	4 cut(s)	189, 334, 1014, 1331
EcoRV	GATATC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	1883
EcoT38I	GRGCYC	3 cut(s)	335, 2119, 2188
ErhI	CCWWGG	1 cut(s)	1883
FaeI	CATG	7 cut(s)	311, 467, 893, 1232, 1616, 1887, 2021
FalI	AAGNNNNNCTT	4 cut(s)	2142, 2174, 2184, 2216
FaqI	GGGAC	4 cut(s)	232, 1059, 2100, 2236
FatI	CATG	7 cut(s)	307, 463, 889, 1228, 1612, 1883, 2017
FauI	CCCGC	3 cut(s)	883, 1756, 2245
FauNDI	CATATG	1 cut(s)	1396
Fnu4HI	GCNGC	5 cut(s)	69, 72, 582, 1068, 1373
FokI	GGATG	3 cut(s)	550, 1073, 2255
FriOI	GRGCYC	3 cut(s)	335, 2119, 2188
Fsp4HI	GCNGC	5 cut(s)	69, 72, 582, 1068, 1373
FspBI	CTAG	8 cut(s)	360, 491, 1277, 1533, 1647, 1775, 2028, 2120
GluI	GCNGC	5 cut(s)	69, 72, 582, 1068, 1373
GsaI	CCCAGC	1 cut(s)	1328
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	4 cut(s)	188, 333, 599, 2075
HapII	CCGG	3 cut(s)	867, 1403, 1907
HgaI	GACGC	2 cut(s)	408, 1157
Hin1II	CATG	7 cut(s)	311, 467, 893, 1232, 1616, 1887, 2021
HindIII	AAGCTT	1 cut(s)	2349
HpaII	CCGG	3 cut(s)	867, 1403, 1907
HphI	GGTGA	4 cut(s)	374, 543, 1358, 1604
Hpy166II	GTNNAC	2 cut(s)	110, 2033
Hpy8I	GTNNAC	2 cut(s)	110, 2033
HpyAV	CCTTC	6 cut(s)	3, 419, 712, 1725, 2064, 2338
HpyCH4III	ACNGT	4 cut(s)	647, 664, 1075, 1244
HpyCH4IV	ACGT	7 cut(s)	142, 257, 790, 979, 995, 1576, 2023
HpyCH4V	TGCA	5 cut(s)	787, 825, 1003, 1669, 2042
HpyF10VI	GCNNNNNNNGC	4 cut(s)	464, 764, 1064, 1666
HpyF3I	CTNAG	7 cut(s)	30, 262, 454, 516, 1899, 2063, 2319
HpySE526I	ACGT	7 cut(s)	142, 257, 790, 979, 995, 1576, 2023
Hsp92II	CATG	7 cut(s)	311, 467, 893, 1232, 1616, 1887, 2021
Kpn2I	TCCGGA	1 cut(s)	1402
KspI	CCGCGG	1 cut(s)	2241
LmnI	GCTCC	4 cut(s)	230, 722, 1405, 2251
Lsp1109I	GCAGC	3 cut(s)	58, 80, 1054
LweI	GCATC	5 cut(s)	528, 745, 1138, 2145, 2233
MaeI	CTAG	8 cut(s)	360, 491, 1277, 1533, 1647, 1775, 2028, 2120
MaeII	ACGT	7 cut(s)	142, 257, 790, 979, 995, 1576, 2023
MaeIII	GTNAC	5 cut(s)	48, 389, 1133, 1231, 2047
MbiI	CCGCTC	1 cut(s)	805
MflI	RGATCY	5 cut(s)	160, 449, 1328, 1512, 1942
MhlI	GDGCHC	3 cut(s)	335, 2119, 2188
MlyI	GAGTC	1 cut(s)	1219
MmeI	TCCRAC	4 cut(s)	418, 811, 822, 1008
MroI	TCCGGA	1 cut(s)	1402
MroXI	GAANNNNTTC	5 cut(s)	678, 1551, 2256, 2306, 2327
MseI	TTAA	7 cut(s)	237, 770, 1038, 1367, 1991, 2337, 2353
MslI	CAYNNNNRTG	1 cut(s)	753
MspA1I	CMGCKG	2 cut(s)	71, 2240
MspI	CCGG	3 cut(s)	867, 1403, 1907
MspR9I	CCNGG	6 cut(s)	191, 336, 868, 1016, 1333, 1908
Mva1269I	GAATGC	2 cut(s)	1434, 1751
MvaI	CCWGG	4 cut(s)	191, 336, 1016, 1333
MvnI	CGCG	4 cut(s)	55, 158, 1720, 2240
MwoI	GCNNNNNNNGC	4 cut(s)	464, 764, 1064, 1666
NciI	CCSGG	2 cut(s)	868, 1908
NcoI	CCATGG	1 cut(s)	1883
NdeI	CATATG	1 cut(s)	1396
NlaIII	CATG	7 cut(s)	311, 467, 893, 1232, 1616, 1887, 2021
NlaIV	GGNNCC	6 cut(s)	333, 451, 873, 1330, 1514, 1944
NmuCI	GTSAC	2 cut(s)	389, 1231
NruI	TCGCGA	1 cut(s)	1720
NspV	TTCGAA	1 cut(s)	688
PctI	GAATGC	2 cut(s)	1434, 1751
PdmI	GAANNNNTTC	5 cut(s)	678, 1551, 2256, 2306, 2327
PfoI	TCCNGGA	1 cut(s)	1906
PkrI	GCNGC	5 cut(s)	70, 73, 583, 1069, 1374
PleI	GAGTC	1 cut(s)	1219
PpsI	GAGTC	1 cut(s)	1219
Ppu21I	YACGTR	1 cut(s)	996
PshBI	ATTAAT	2 cut(s)	1991, 2337
PsiI	TTATAA	3 cut(s)	1539, 1964, 2166
Psp124BI	GAGCTC	1 cut(s)	2188
Psp1406I	AACGTT	1 cut(s)	979
Psp6I	CCWGG	4 cut(s)	189, 334, 1014, 1331
PspFI	CCCAGC	1 cut(s)	1324
PspGI	CCWGG	4 cut(s)	189, 334, 1014, 1331
PspN4I	GGNNCC	6 cut(s)	333, 451, 873, 1330, 1514, 1944
PspOMI	GGGCCC	1 cut(s)	331
PspPI	GGNCC	5 cut(s)	187, 331, 332, 1244, 2073
PsuI	RGATCY	5 cut(s)	160, 449, 1328, 1512, 1942
PvuII	CAGCTG	1 cut(s)	71
RruI	TCGCGA	1 cut(s)	1720
RsaI	GTAC	5 cut(s)	109, 534, 1155, 2199, 2206
RsaNI	GTAC	5 cut(s)	108, 533, 1154, 2198, 2205
RseI	CAYNNNNRTG	1 cut(s)	753
SacI	GAGCTC	1 cut(s)	2188
SacII	CCGCGG	1 cut(s)	2241
SaqAI	TTAA	7 cut(s)	237, 770, 1038, 1367, 1991, 2337, 2353
SatI	GCNGC	5 cut(s)	69, 72, 582, 1068, 1373
Sau96I	GGNCC	5 cut(s)	187, 331, 332, 1244, 2073
ScaI	AGTACT	1 cut(s)	2199
SchI	GAGTC	1 cut(s)	1219
ScrFI	CCNGG	6 cut(s)	191, 336, 868, 1016, 1333, 1908
SduI	GDGCHC	3 cut(s)	335, 2119, 2188
SfaNI	GCATC	5 cut(s)	528, 745, 1138, 2145, 2233
SfcI	CTRYAG	1 cut(s)	879
Sfr303I	CCGCGG	1 cut(s)	2241
SfuI	TTCGAA	1 cut(s)	688
SgrBI	CCGCGG	1 cut(s)	2241
SinI	GGWCC	1 cut(s)	1244
SmiMI	CAYNNNNRTG	1 cut(s)	753
SspI	AATATT	2 cut(s)	710, 1923
SspMI	CTAG	8 cut(s)	360, 491, 1277, 1533, 1647, 1775, 2028, 2120
SstI	GAGCTC	1 cut(s)	2188
StyD4I	CCNGG	6 cut(s)	189, 334, 866, 1014, 1331, 1906
StyI	CCWWGG	1 cut(s)	1883
TaaI	ACNGT	4 cut(s)	647, 664, 1075, 1244
TaiI	ACGT	7 cut(s)	145, 260, 793, 982, 998, 1579, 2026
TaqI	TCGA	8 cut(s)	320, 607, 640, 688, 763, 1492, 1789, 2260
TaqII	GACCGA	2 cut(s)	138, 801
TatI	WGTACW	1 cut(s)	2197
TauI	GCSGC	2 cut(s)	584, 1375
Tru1I	TTAA	7 cut(s)	237, 770, 1038, 1367, 1991, 2337, 2353
Tru9I	TTAA	7 cut(s)	237, 770, 1038, 1367, 1991, 2337, 2353
TseFI	GTSAC	2 cut(s)	389, 1231
TseI	GCWGC	3 cut(s)	68, 71, 1067
Tsp45I	GTSAC	2 cut(s)	389, 1231
TspGWI	ACGGA	4 cut(s)	411, 489, 550, 926
VpaK11BI	GGWCC	1 cut(s)	1244
VspI	ATTAAT	2 cut(s)	1991, 2337
XapI	RAATTY	8 cut(s)	95, 266, 510, 589, 653, 1050, 1218, 1638
XbaI	TCTAGA	3 cut(s)	490, 1276, 2119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmnI	GAANNNNTTC	5 cut(s)	678, 1551, 2256, 2306, 2327
XspI	CTAG	8 cut(s)	360, 491, 1277, 1533, 1647, 1775, 2028, 2120
ZrmI	AGTACT	1 cut(s)	2199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.