Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005882

Physical Location & Seq

Genomic Coordinates Reverse (-)

358955 .. 362167

Gene Structure 3213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000284

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3213 bp

ATGCTTGGAGGTGGAAATGAGGCAATATCTACAATACCTGGATTTAATCAGATACAATTTGAAGGGTTTTGTAGGTTCATTGATCAGGGCTTAACAGAGGAACTTTATAAGTTTCCAAAAATTGAAGATACAGATCAAGAAATTGAATTTCAATTATTTGTGGAAACATATCAATTGGTAGAACCGTTGATAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTTCGGAATTATATGTATCCGCGGGATTAATTTGGAAAAACAGTAGGGATATGCAAGAACAAACAATTTTTATTGGAAATATTCCTCTAATGAATTCCCTGGGAACTTCTATAGTAAACGGAATATACAGAATTGTGATCAATCAAATATTGCAAAGCCCTGGTATCTATTACCGGTCAGAACTGGACCATAACGGAATTTCAGTCTATACCGGCATCATAATATCAGATTGGGGAGGGAGATTAGAATTAGAGATTGATAGAAAAGCAAGGATATGGGCTCGTGTCAGTAGGAAACAAAAAATATCTATTCTAGTTCTATCATCAGCTATGGGTTCGAATCTAAGAGAAATTCTAGAGAATGCTCGCTACCCCGAAATTTTCTTGTCTTTCCTGAATGATAAGGAGAAAAAAAAAATCGGGTCAAAAGAAAATGCCATTTTGGAGTTTTATCAACAATTTGCTTGTGTAGGCGGAGATCCGGTAGTTTCTGAATCCTTATGTAAGGAATTACAAAAAAAATTCTTTCAACAAAGATGTGAGTTAGGAAGGATTGGTCGACGAAATATGAACCGAAGGCTGAATCTTGATATCCCTCAGAACAACACATTTTTGTTACCGCGAGATATATTGGCAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGACGATATGAATCATTTGAAAAATAAACGTATTCGGTCTGTCGCGGATCTTTTACAAGACCAATTCGGATTGGCCCTGGTTCGTTTAGAAAATATGGTTAGAGGGACTATATGCGGAGCAATTAAGCATAAATTGATACCCACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACCACTTATGAATCTTTTTTTGGATTACACCCATTATCTCAAGTTTTGGATCAAACTAATCCATTGACCCAAATAGTTCATGGGAGAAAATCGAGTTATCTGGGCCCTGGAGGATTGACAGGGCGAACTGCTAGTTTTCGGATACGAGATATTCACCCCAGTCACTACGGACGCATTTGCCCCATTGACACCTCTGAAGGAATCAATGTTGGACTTATTGGATCCTTAGCAATTCATGCGAAGATTGGTTATTGGGGGTCTCTAGAAAGTCCGTTTTATGAAATTTCTGAGAGATCAAAAAAAGTACGGATGCTTTATTTATCACCAAGTAAAGATGAATACTATATGATAGCGGCAGGAAATTCTTTGGCCTTGAATCGAGGTATTCAGGAAGAACAGGTTGTTCCAGCTCGATACCGTCAAGAATTCCTGACTGTTGAATGGGAACAGGTTCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTGATTCCTTTTATTGAGCATAATGATGCGAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCGCTCTCTCGGTCTGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTTTAGATTCCGGGGTTCCCGCTATAGCCGAACATGAGGGAAAGATCATTTATACGGATACTGACAAGATAATTTTATCGGGCAATGGGGATACTCTAAACATTCCATTAGTTATATACCAACGTTCCAACAAAAATACGTGTATGCACCAAAAACCCCAGGTTCAGCGAGGTAAATGTATTAAAAAGGGACAAATTTTAGCGGATGGTGCTGCTACGGTTGGTGGCGAACTCGCTTTGGGAAAAAATGTATTAGTAGCTTATATGCCGTGGGAGGGTTACAATTCTGAAGATGCGGTACTTATTAGTGAGCGTCTGGTATATGGAGATATTTATACTTCTTTTCACATAAGGAAATATGAAATTCAGACTCATGTGACAAGCAACGGTCCTGAAAGAATTACTAACGAAATACCACATCTAGAAGCCCATTTACTCCGCAATTTAGACAAAAATGGAATTGTGAGGCTGGGATCCTGGGTAAAGACGGGTGATATTTTAGTAGGTAAATTAACGCCGCAGATGGCGAAAGAATCGTCATATGCTCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAGGAAACTTGTCTAAAATTACCGATAGGTGGTAGAGGTCGAGTTATTGATGTAAGATGGATCCAGAAAAAGGGAGGTTCTAGTTATAATCCAGAAACGATTCGTGTATATATTTCACAAAAACGTGAAATCAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCGTTTCAAAAATTTTACCTAGACAAGATATGCCTTATTTGCAAGATGGAAGACCTGTTGATATGGTCTTCAACCCATTAGGAGTTCCTTCGCGAATGAATGTAGGACAGATATTTGAATGCTCACTCGGGTTAGCGGGAGGTCTGCTAGATAGACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCAAGAAAACTGGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCGAATCCATGGGTATTTGAACCTGAGTATCCGGGAAAAAGCAGAATATTTGATGGAAGAACGGGGGATCCTTTTGAACAACCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACATGGACGTTCTAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGCAAGGGGGACAACGGGTAGGAGAAATGGAAGTTTGGGCTCTAGAGGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCGGATCATATTAGAGCTCGTCAAGAAGTACTTGGTACTACAATCATTGGAGGGACAATACCTCAACCCGCGGATGCTCCCGAATCTTTTCGATTGCTCGTGCGAGAACTACGATCTTTGGCTCTGGAACTGAACCATTTCCTTGTATCTGAGAAGAACTTCCAGATTAATAGGAAGGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006354 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1071

Amino Acids

120.53

Weight (kDa)

8.8

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	17 - 126	2.7e-06	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	128 - 315	7.4e-54	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	376 - 444	5.9e-23	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_6	PF00562	581 - 979	7.8e-104	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	981 - 1056	3.8e-22	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00190
malus_domestica	MD01G1093300.v1.1 MD16G1169300.v1.1
pyrus_communis	pycom12397g00320 pycom14g07090
rosa_chinensis	RchiOBHm_CPg0502401
rosa_laevigata	RLG00000000047 RLG00000000087 RLG00000000116 RLG00000000175 RLG00000000231 RLG00000000246 RLG00000000284 RLG00000000299 RLG00000000300 RLG00000000314 RLG00000000318 RLG00000000340
rosa_multiflora	Rmu_sc0002986.1_g000010 Rmu_sc0008812.1_g000013 Rmu_sc0011830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00119070
rosa_rugosa	Rorug02G0490800 RorugMtG0001900
rosa_samantha	Rh2AG293900 Rh2AG294000 Rh2DG317800 Rh2DG317900

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	108, 2397, 2822, 3024
AccBSI	CCGCTC	1 cut(s)	1663
AccI	GTMKAC	1 cut(s)	787
AccII	CGCG	5 cut(s)	251, 850, 953, 2578, 3098
AccIII	TCCGGA	1 cut(s)	2260
AclI	AACGTT	1 cut(s)	1837
AcuI	CTGAAG	2 cut(s)	1302, 2022
AfaI	GTAC	5 cut(s)	904, 1392, 2013, 3057, 3064
AfiI	CCNNNNNNNGG	5 cut(s)	1988, 2339, 2380, 2924, 2940
AflIII	ACRYGT	1 cut(s)	1853
AgeI	ACCGGT	1 cut(s)	402
AjnI	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1872, 2189
AjuI	GAANNNNNNNTTGG	2 cut(s)	1089, 1121
AloI	GAACNNNNNNTCC	2 cut(s)	2785, 2817
AluBI	AGCT	9 cut(s)	557, 866, 1496, 1583, 1625, 1973, 2462, 3044, 3209
AluI	AGCT	9 cut(s)	557, 866, 1496, 1583, 1625, 1973, 2462, 3044, 3209
Alw21I	GWGCWC	1 cut(s)	3046
Alw26I	GTCTC	1 cut(s)	1350
Ama87I	CYCGRG	1 cut(s)	2612
Aor13HI	TCCGGA	1 cut(s)	2260
AoxI	GGCC	4 cut(s)	981, 1189, 1455, 2931
ApaI	GGGCCC	1 cut(s)	1193
ApeKI	GCWGC	3 cut(s)	863, 866, 1925
ArsI	GACNNNNNNTTYG	2 cut(s)	2234, 2266
AseI	ATTAAT	3 cut(s)	257, 2849, 3195
AsiGI	ACCGGT	1 cut(s)	402
Asp700I	GAANNNNTTC	5 cut(s)	1536, 2409, 3114, 3164, 3185
AspS9I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 2102, 2931
AsuC2I	CCSGG	2 cut(s)	1726, 2766
AsuHPI	GGTGA	4 cut(s)	1232, 1401, 2216, 2462
AsuII	TTCGAA	2 cut(s)	566, 1546
AvaI	CYCGRG	1 cut(s)	2612
AvaII	GGWCC	2 cut(s)	415, 2102
BaeGI	GKGCMC	1 cut(s)	1193
BaeI	ACNNNNGTAYC	2 cut(s)	2744, 2777
BamHI	GGATCC	4 cut(s)	1307, 2186, 2370, 2800
BanII	GRGCYC	4 cut(s)	511, 1193, 2977, 3046
BarI	GAAGNNNNNNTAC	4 cut(s)	1995, 2027, 2130, 2162
BauI	CACGAG	2 cut(s)	510, 3125
BbsI	GAAGAC	3 cut(s)	2473, 2542, 2545
Bbv12I	GWGCWC	1 cut(s)	3046
BbvI	GCAGC	3 cut(s)	853, 875, 1912
BccI	CCATC	5 cut(s)	1913, 2230, 2361, 2525, 2780
BceAI	ACGGC	1 cut(s)	1966
BciT130I	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2191
BciVI	GTATCC	6 cut(s)	256, 1221, 1765, 1798, 2311, 2772
BclI	TGATCA	2 cut(s)	82, 366
BcnI	CCSGG	2 cut(s)	1726, 2766
BcoDI	GTCTC	1 cut(s)	1350
BfmI	CTRYAG	2 cut(s)	339, 1737
BfuI	GTATCC	6 cut(s)	256, 1221, 1765, 1798, 2311, 2772
BisI	GCNGC	5 cut(s)	864, 867, 1440, 1926, 2231
BlsI	GCNGC	5 cut(s)	865, 868, 1441, 1927, 2232
BmcAI	AGTACT	1 cut(s)	3057
Bme1390I	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1726, 1874, 2191, 2766
Bme18I	GGWCC	2 cut(s)	415, 2102
BmeT110I	CYCGRG	1 cut(s)	2612
BmgT120I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 2102, 2931
BmiI	GGNNCC	6 cut(s)	1191, 1309, 1731, 2188, 2372, 2802
BmrFI	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1726, 1874, 2191, 2766
BmrI	ACTGGG	2 cut(s)	1239, 1704
BmsI	GCATC	7 cut(s)	193, 453, 1386, 1603, 1996, 3003, 3091
BmuI	ACTGGG	2 cut(s)	1239, 1704
BpiI	GAAGAC	3 cut(s)	2473, 2542, 2545
BpmI	CTGGAG	1 cut(s)	1215
Bpu10I	CCTNAGC	1 cut(s)	1312
Bpu14I	TTCGAA	2 cut(s)	566, 1546
BpuEI	CTTGAG	1 cut(s)	1110
BpuMI	CCSGG	2 cut(s)	1726, 2766
BsaAI	YACGTR	1 cut(s)	1854
BsaBI	GATNNNNATC	3 cut(s)	132, 918, 1617
BsaI	GGTCTC	1 cut(s)	1350
BsaWI	WCCGGW	3 cut(s)	402, 709, 2260
BsaXI	ACNNNNNCTCC	4 cut(s)	696, 726, 1060, 1090
Bsc4I	CCNNNNNNNGG	5 cut(s)	1988, 2339, 2380, 2924, 2940
Bse118I	RCCGGY	2 cut(s)	402, 440
Bse1I	ACTGG	5 cut(s)	417, 1245, 1699, 2700, 2721
Bse3DI	GCAATG	1 cut(s)	1804
Bse8I	GATNNNNATC	3 cut(s)	132, 918, 1617
BseAI	TCCGGA	1 cut(s)	2260
BseBI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2191
BseGI	GGATG	3 cut(s)	1401, 1924, 3106
BseJI	GATNNNNATC	3 cut(s)	132, 918, 1617
BseLI	CCNNNNNNNGG	5 cut(s)	1988, 2339, 2380, 2924, 2940
BseMI	GCAATG	1 cut(s)	1804
BseMII	CTCAG	5 cut(s)	839, 1070, 1365, 2748, 3168
BseNI	ACTGG	5 cut(s)	417, 1245, 1699, 2700, 2721
BseRI	GAGGAG	1 cut(s)	1044
BseSI	GKGCMC	1 cut(s)	1193
BseXI	GCAGC	3 cut(s)	853, 875, 1912
BseYI	CCCAGC	1 cut(s)	2182
Bsh1236I	CGCG	5 cut(s)	251, 850, 953, 2578, 3098
BshFI	GGCC	4 cut(s)	983, 1191, 1457, 2933
BshTI	ACCGGT	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	3046
BsiHKCI	CYCGRG	1 cut(s)	2612
BsiSI	CCGG	6 cut(s)	403, 441, 710, 1725, 2261, 2765
BslFI	GGGAC	4 cut(s)	1027, 1917, 2958, 3094
BslI	CCNNNNNNNGG	5 cut(s)	1988, 2339, 2380, 2924, 2940
BsmAI	GTCTC	1 cut(s)	1350
BsmFI	GGGAC	4 cut(s)	1027, 1917, 2958, 3094
BsmI	GAATGC	3 cut(s)	595, 2292, 2609
BsnI	GGCC	4 cut(s)	983, 1191, 1457, 2933
Bso31I	GGTCTC	1 cut(s)	1350
BsoBI	CYCGRG	1 cut(s)	2612
Bsp119I	TTCGAA	2 cut(s)	566, 1546
Bsp120I	GGGCCC	1 cut(s)	1189
Bsp1286I	GDGCHC	4 cut(s)	511, 1193, 2977, 3046
Bsp13I	TCCGGA	1 cut(s)	2260
Bsp19I	CCATGG	1 cut(s)	2741
Bsp68I	TCGCGA	1 cut(s)	2578
BspANI	GGCC	4 cut(s)	983, 1191, 1457, 2933
BspCNI	CTCAG	5 cut(s)	838, 1069, 1366, 2749, 3169
BspEI	TCCGGA	1 cut(s)	2260
BspFNI	CGCG	5 cut(s)	251, 850, 953, 2578, 3098
BspLI	GGNNCC	6 cut(s)	1191, 1309, 1731, 2188, 2372, 2802
BspT104I	TTCGAA	2 cut(s)	566, 1546
BspTNI	GGTCTC	1 cut(s)	1350
BsrBI	CCGCTC	1 cut(s)	1663
BsrDI	GCAATG	1 cut(s)	1804
BsrFI	RCCGGY	2 cut(s)	402, 440
BsrI	ACTGG	5 cut(s)	417, 1245, 1699, 2700, 2721
BssAI	RCCGGY	2 cut(s)	402, 440
BssSI	CACGAG	2 cut(s)	510, 3125
BssT1I	CCWWGG	1 cut(s)	2741
Bst2BI	CACGAG	2 cut(s)	510, 3125
Bst2UI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2191
Bst4CI	ACNGT	6 cut(s)	186, 272, 1505, 1522, 1933, 2102
BstAPI	GCANNNNNTGC	1 cut(s)	1322
BstBAI	YACGTR	1 cut(s)	1854
BstBI	TTCGAA	2 cut(s)	566, 1546
BstC8I	GCNNGC	1 cut(s)	595
BstDEI	CTNAG	8 cut(s)	572, 825, 1056, 1312, 1374, 2757, 2921, 3177
BstDSI	CCRYGG	4 cut(s)	249, 1982, 2741, 3096
BstF5I	GGATG	3 cut(s)	1401, 1924, 3106
BstFNI	CGCG	5 cut(s)	251, 850, 953, 2578, 3098
BstMAI	GTCTC	1 cut(s)	1350
BstMWI	GCNNNNNNNGC	4 cut(s)	1322, 1622, 1922, 2524
BstNI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2191
BstSCI	CCNGG	9 cut(s)	37, 327, 388, 984, 1192, 1724, 1872, 2189, 2764
BstSFI	CTRYAG	2 cut(s)	339, 1737
BstSLI	GKGCMC	1 cut(s)	1193
BstUI	CGCG	5 cut(s)	251, 850, 953, 2578, 3098
BstV1I	GCAGC	3 cut(s)	853, 875, 1912
BstV2I	GAAGAC	3 cut(s)	2473, 2542, 2545
BstX2I	RGATCY	6 cut(s)	706, 955, 1307, 2186, 2370, 2800
BstYI	RGATCY	6 cut(s)	706, 955, 1307, 2186, 2370, 2800
BsuI	GTATCC	6 cut(s)	256, 1221, 1765, 1798, 2311, 2772
BsuRI	GGCC	4 cut(s)	983, 1191, 1457, 2933
BtgI	CCRYGG	4 cut(s)	249, 1982, 2741, 3096
BtsCI	GGATG	3 cut(s)	1401, 1924, 3106
BtuMI	TCGCGA	1 cut(s)	2578
Cac8I	GCNNGC	1 cut(s)	595
Cfr10I	RCCGGY	2 cut(s)	402, 440
Cfr13I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 2102, 2931
Cfr42I	CCGCGG	2 cut(s)	252, 3099
CseI	GACGC	2 cut(s)	1266, 2015
Csp6I	GTAC	5 cut(s)	903, 1391, 2012, 3056, 3063
CspAI	ACCGGT	1 cut(s)	402
CviAII	CATG	7 cut(s)	1166, 1322, 1748, 2087, 2471, 2742, 2876
CviQI	GTAC	5 cut(s)	903, 1391, 2012, 3056, 3063
DdeI	CTNAG	8 cut(s)	572, 825, 1056, 1312, 1374, 2757, 2921, 3177
EciI	GGCGGA	1 cut(s)	717
Ecl136II	GAGCTC	1 cut(s)	3044
Eco130I	CCWWGG	1 cut(s)	2741
Eco24I	GRGCYC	4 cut(s)	511, 1193, 2977, 3046
Eco31I	GGTCTC	1 cut(s)	1350
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	2 cut(s)	415, 2102
Eco53kI	GAGCTC	1 cut(s)	3044
Eco57I	CTGAAG	2 cut(s)	1302, 2022
Eco88I	CYCGRG	1 cut(s)	2612
EcoICRI	GAGCTC	1 cut(s)	3044
EcoO109I	RGGNCCY	1 cut(s)	1190
EcoRI	GAATTC	2 cut(s)	322, 1511
EcoRII	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1872, 2189
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	1 cut(s)	2741
EcoT38I	GRGCYC	4 cut(s)	511, 1193, 2977, 3046
ErhI	CCWWGG	1 cut(s)	2741
FaeI	CATG	7 cut(s)	1169, 1325, 1751, 2090, 2474, 2745, 2879
FalI	AAGNNNNNCTT	4 cut(s)	3000, 3032, 3042, 3074
FaqI	GGGAC	4 cut(s)	1027, 1917, 2958, 3094
FatI	CATG	7 cut(s)	1165, 1321, 1747, 2086, 2470, 2741, 2875
FauI	CCCGC	4 cut(s)	244, 1741, 2614, 3103
FauNDI	CATATG	1 cut(s)	2254
FbaI	TGATCA	2 cut(s)	82, 366
FblI	GTMKAC	1 cut(s)	787
Fnu4HI	GCNGC	5 cut(s)	864, 867, 1440, 1926, 2231
FokI	GGATG	3 cut(s)	1408, 1931, 3113
FriOI	GRGCYC	4 cut(s)	511, 1193, 2977, 3046
Fsp4HI	GCNGC	5 cut(s)	864, 867, 1440, 1926, 2231
GluI	GCNGC	5 cut(s)	864, 867, 1440, 1926, 2231
GsaI	CCCAGC	1 cut(s)	2186
GsuI	CTGGAG	1 cut(s)	1215
HaeIII	GGCC	4 cut(s)	983, 1191, 1457, 2933
HapII	CCGG	6 cut(s)	403, 441, 710, 1725, 2261, 2765
HgaI	GACGC	2 cut(s)	1266, 2015
Hin1II	CATG	7 cut(s)	1169, 1325, 1751, 2090, 2474, 2745, 2879
HincII	GTYRAC	1 cut(s)	788
HindII	GTYRAC	1 cut(s)	788
HindIII	AAGCTT	1 cut(s)	3207
HpaII	CCGG	6 cut(s)	403, 441, 710, 1725, 2261, 2765
HphI	GGTGA	4 cut(s)	1232, 1401, 2216, 2462
Hpy166II	GTNNAC	4 cut(s)	346, 788, 905, 2891
Hpy8I	GTNNAC	4 cut(s)	346, 788, 905, 2891
Hpy99I	CGWCG	1 cut(s)	792
HpyAV	CCTTC	8 cut(s)	56, 771, 798, 1277, 1570, 2583, 2922, 3196
HpyCH4III	ACNGT	6 cut(s)	186, 272, 1505, 1522, 1933, 2102
HpyCH4IV	ACGT	6 cut(s)	937, 1648, 1837, 1853, 2434, 2881
HpyCH4V	TGCA	7 cut(s)	283, 382, 1645, 1683, 1861, 2527, 2900
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1322, 1622, 1922, 2524
HpyF3I	CTNAG	8 cut(s)	572, 825, 1056, 1312, 1374, 2757, 2921, 3177
HpySE526I	ACGT	6 cut(s)	937, 1648, 1837, 1853, 2434, 2881
Hsp92II	CATG	7 cut(s)	1169, 1325, 1751, 2090, 2474, 2745, 2879
Kpn2I	TCCGGA	1 cut(s)	2260
Ksp22I	TGATCA	2 cut(s)	82, 366
KspI	CCGCGG	2 cut(s)	252, 3099
LmnI	GCTCC	4 cut(s)	1025, 1580, 2263, 3109
Lsp1109I	GCAGC	3 cut(s)	853, 875, 1912
LweI	GCATC	7 cut(s)	193, 453, 1386, 1603, 1996, 3003, 3091
MaeII	ACGT	6 cut(s)	937, 1648, 1837, 1853, 2434, 2881
MaeIII	GTNAC	6 cut(s)	843, 1066, 1247, 1991, 2089, 2905
MbiI	CCGCTC	1 cut(s)	1663
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	6 cut(s)	706, 955, 1307, 2186, 2370, 2800
MhlI	GDGCHC	4 cut(s)	511, 1193, 2977, 3046
MlyI	GAGTC	1 cut(s)	2077
MmeI	TCCRAC	4 cut(s)	1276, 1669, 1680, 1866
MroI	TCCGGA	1 cut(s)	2260
MroXI	GAANNNNTTC	5 cut(s)	1536, 2409, 3114, 3164, 3185
MslI	CAYNNNNRTG	1 cut(s)	1611
MspA1I	CMGCKG	3 cut(s)	251, 866, 3098
MspI	CCGG	6 cut(s)	403, 441, 710, 1725, 2261, 2765
MspR9I	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1726, 1874, 2191, 2766
MunI	CAATTG	1 cut(s)	173
Mva1269I	GAATGC	3 cut(s)	595, 2292, 2609
MvaI	CCWGG	7 cut(s)	39, 329, 390, 986, 1194, 1874, 2191
MvnI	CGCG	5 cut(s)	251, 850, 953, 2578, 3098
MwoI	GCNNNNNNNGC	4 cut(s)	1322, 1622, 1922, 2524
NciI	CCSGG	2 cut(s)	1726, 2766
NcoI	CCATGG	1 cut(s)	2741
NdeI	CATATG	1 cut(s)	2254
NlaIII	CATG	7 cut(s)	1169, 1325, 1751, 2090, 2474, 2745, 2879
NlaIV	GGNNCC	6 cut(s)	1191, 1309, 1731, 2188, 2372, 2802
NmuCI	GTSAC	2 cut(s)	1247, 2089
NruI	TCGCGA	1 cut(s)	2578
NspV	TTCGAA	2 cut(s)	566, 1546
PasI	CCCWGGG	1 cut(s)	328
PctI	GAATGC	3 cut(s)	595, 2292, 2609
PdmI	GAANNNNTTC	5 cut(s)	1536, 2409, 3114, 3164, 3185
PfoI	TCCNGGA	1 cut(s)	2764
PinAI	ACCGGT	1 cut(s)	402
PkrI	GCNGC	5 cut(s)	865, 868, 1441, 1927, 2232
PleI	GAGTC	1 cut(s)	2077
PpsI	GAGTC	1 cut(s)	2077
Ppu21I	YACGTR	1 cut(s)	1854
PshBI	ATTAAT	3 cut(s)	257, 2849, 3195
PsiI	TTATAA	4 cut(s)	108, 2397, 2822, 3024
Psp124BI	GAGCTC	1 cut(s)	3046
Psp1406I	AACGTT	1 cut(s)	1837
Psp6I	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1872, 2189
PspFI	CCCAGC	1 cut(s)	2182
PspGI	CCWGG	7 cut(s)	37, 327, 388, 984, 1192, 1872, 2189
PspN4I	GGNNCC	6 cut(s)	1191, 1309, 1731, 2188, 2372, 2802
PspOMI	GGGCCC	1 cut(s)	1189
PspPI	GGNCC	6 cut(s)	415, 982, 1189, 1190, 2102, 2931
PsuI	RGATCY	6 cut(s)	706, 955, 1307, 2186, 2370, 2800
PvuII	CAGCTG	1 cut(s)	866
RruI	TCGCGA	1 cut(s)	2578
RsaI	GTAC	5 cut(s)	904, 1392, 2013, 3057, 3064
RsaNI	GTAC	5 cut(s)	903, 1391, 2012, 3056, 3063
RseI	CAYNNNNRTG	1 cut(s)	1611
SacI	GAGCTC	1 cut(s)	3046
SacII	CCGCGG	2 cut(s)	252, 3099
SalI	GTCGAC	1 cut(s)	786
SatI	GCNGC	5 cut(s)	864, 867, 1440, 1926, 2231
Sau96I	GGNCC	6 cut(s)	415, 982, 1189, 1190, 2102, 2931
ScaI	AGTACT	1 cut(s)	3057
SchI	GAGTC	1 cut(s)	2077
ScrFI	CCNGG	9 cut(s)	39, 329, 390, 986, 1194, 1726, 1874, 2191, 2766
SduI	GDGCHC	4 cut(s)	511, 1193, 2977, 3046
SfaNI	GCATC	7 cut(s)	193, 453, 1386, 1603, 1996, 3003, 3091
SfcI	CTRYAG	2 cut(s)	339, 1737
Sfr303I	CCGCGG	2 cut(s)	252, 3099
SfuI	TTCGAA	2 cut(s)	566, 1546
SgrBI	CCGCGG	2 cut(s)	252, 3099
SinI	GGWCC	2 cut(s)	415, 2102
SmiMI	CAYNNNNRTG	1 cut(s)	1611
SmlI	CTYRAG	1 cut(s)	1125
SmoI	CTYRAG	1 cut(s)	1125
SspI	AATATT	4 cut(s)	310, 378, 1568, 2781
SstI	GAGCTC	1 cut(s)	3046
StyD4I	CCNGG	9 cut(s)	37, 327, 388, 984, 1192, 1724, 1872, 2189, 2764
StyI	CCWWGG	1 cut(s)	2741
TaaI	ACNGT	6 cut(s)	186, 272, 1505, 1522, 1933, 2102
TaiI	ACGT	6 cut(s)	940, 1651, 1840, 1856, 2437, 2884
TaqII	GACCGA	2 cut(s)	933, 1659
TatI	WGTACW	1 cut(s)	3055
TauI	GCSGC	2 cut(s)	1442, 2233
TseFI	GTSAC	2 cut(s)	1247, 2089
TseI	GCWGC	3 cut(s)	863, 866, 1925
Tsp45I	GTSAC	2 cut(s)	1247, 2089
TspGWI	ACGGA	6 cut(s)	363, 438, 1269, 1347, 1408, 1784
VpaK11BI	GGWCC	2 cut(s)	415, 2102
VspI	ATTAAT	3 cut(s)	257, 2849, 3195
XbaI	TCTAGA	4 cut(s)	583, 1348, 2134, 2977
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1163
XmiI	GTMKAC	1 cut(s)	787
XmnI	GAANNNNTTC	5 cut(s)	1536, 2409, 3114, 3164, 3185
ZrmI	AGTACT	1 cut(s)	3057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.