ATCG00680

One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Pt
OG0007092
Physical Location & Seq
Forward (+)
72371 .. 73897
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
ATCG00680.1

Sequence Viewer

Length: 1527 bp
ATGGGTTTGCCTTGGTATCGTGTTCATACTGTTGTATTGAATGATCCCGGTCGTTTACTTGCTGTTCATATAATGCATACTGCTCTAGTTGCTGGTTGGGCTGGTTCGATGGCTCTATATGAATTAGCAGTTTTTGATCCCTCCGACCCCGTTCTTGATCCAATGTGGAGACAAGGTATGTTCGTTATACCTTTCATGACTCGTTTAGGAATAACCAATTCTTGGGGCGGTTGGAATATTACAGGGGGGACTATAACGAATCCGGGTCTTTGGAGTTACGAAGGGGTAGCCGGAGCACATATAGTGTTTTCTGGTTTGTGCTTCTTGGCAGCTATTTGGCATTGGGTATATTGGGATCTAGAAATTTTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCCAAGATTTTTGGAATTCATTTATTTCTTTCAGGAGTGGCTTGCTTCGGTTTTGGCGCATTTCATGTAACAGGATTATATGGTCCTGGAATATGGGTATCCGACCCTTATGGACTAACCGGAAAGGTACAACCCGTAAACCCGGCGTGGGGCGTGGAGGGTTTTGACCCTTTTGTTCCGGGAGGAATAGCCTCTCATCATATTGCAGCAGGGACGTTGGGTATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCCTCAACGTCTATACAAAGGATTACGTATGGGCAATATTGAAACCGTCCTTTCCAGTAGTATTGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCTGCAACTACTCCCATCGAATTATTTGGTCCTACTCGTTATCAATGGGATCAGGGATACTTTCAACAAGAAATATATCGAAGAGTTAGTGCTGGACTGGCTGAAAATCAAAGTTTATCAGAAGCTTGGGCGAAAATTCCTGAAAAATTAGCTTTTTATGATTATATTGGTAATAATCCAGCAAAAGGGGGGTTATTCCGAGCGGGTTCAATGGACAATGGGGATGGAATAGCTGTTGGATGGTTAGGCCACCCCGTCTTTAGAAATAAAGAAGGGCGTGAACTTTTTGTACGCCGCATGCCTACTTTTTTTGAAACTTTTCCGGTAGTTTTGGTAGACGGAGACGGAATTGTTAGAGCTGACGTCCCGTTTAGAAGGGCAGAATCAAAATATAGTGTCGAACAAGTAGGTGTAACTGTTGAGTTTTATGGTGGTGAACTCAATGGAGTGAGTTATAGTGATCCCGCAACTGTGAAAAAATATGCTAGACGGGCTCAATTGGGTGAGATTTTTGAATTAGATCGTGCGACTTTGAAATCTGATGGTGTTTTTCGTAGCAGCCCAAGAGGTTGGTTTACGTTTGGACATGCTTCGTTTGCTCTACTTTTCTTCTTTGGACACATTTGGCATGGTGCTAGAACCCTCTTCAGAGATGTTTTTGCTGGTATTGATCCAGATTTGGATGCTCAAGTGGAATTCGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAACGACAAGCAGTCTGA

Protein Analysis

508

Amino Acids

56.04

Weight (kDa)

6.4

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSII PF00421 1 - 500 5.1e-275 Photosystem II protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1143
AccB7I CCANNNNNTGG 1 cut(s) 222
AccBSI CCGCTC 1 cut(s) 980
AccI GTMKAC 1 cut(s) 1113
AciI CCGC 6 cut(s) 228, 635, 662, 980, 1072, 1242
AclWI GGATC 8 cut(s) 38, 131, 152, 363, 834, 1232, 1442, 1493
AcsI RAATTY 4 cut(s) 363, 420, 912, 1472
AcuI CTGAAG 1 cut(s) 1408
AcyI GRCGYC 1 cut(s) 1140
AfaI GTAC 3 cut(s) 382, 534, 1068
AfiI CCNNNNNNNGG 4 cut(s) 222, 553, 554, 962
AgsI TTSAA 7 cut(s) 40, 704, 842, 987, 1091, 1292, 1312
AhdI GACNNNNNGTC 1 cut(s) 1520
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 6 cut(s) 332, 746, 902, 929, 1010, 1136
AluI AGCT 6 cut(s) 332, 746, 902, 929, 1010, 1136
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 2 cut(s) 163, 1113
AlwI GGATC 8 cut(s) 38, 131, 152, 363, 834, 1232, 1442, 1493
AoxI GGCC 2 cut(s) 637, 1024
ApeKI GCWGC 5 cut(s) 329, 611, 728, 743, 1335
ApoI RAATTY 4 cut(s) 363, 420, 912, 1472
Asp700I GAANNNNTTC 2 cut(s) 391, 1095
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 3 cut(s) 488, 637, 806
AsuC2I CCSGG 4 cut(s) 48, 264, 548, 585
AsuHPI GGTGA 2 cut(s) 1223, 1292
AvaII GGWCC 2 cut(s) 488, 806
BanII GRGCYC 1 cut(s) 1273
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 5 cut(s) 341, 623, 715, 755, 1347
BccI CCATC 6 cut(s) 103, 654, 800, 995, 1011, 1313
BciT130I CCWGG 1 cut(s) 492
BciVI GTATCC 2 cut(s) 514, 827
BcnI CCSGG 4 cut(s) 48, 264, 548, 585
BcoDI GTCTC 2 cut(s) 163, 1113
BfaI CTAG 4 cut(s) 86, 359, 1263, 1413
BfuI GTATCC 2 cut(s) 514, 827
BisI GCNGC 6 cut(s) 330, 612, 729, 744, 1072, 1336
BlsI GCNGC 6 cut(s) 331, 613, 730, 745, 1073, 1337
Bme1390I CCNGG 5 cut(s) 48, 264, 492, 548, 585
Bme18I GGWCC 2 cut(s) 488, 806
BmeRI GACNNNNNGTC 1 cut(s) 1520
BmgT120I GGNCC 3 cut(s) 488, 637, 806
BmrFI CCNGG 5 cut(s) 48, 264, 492, 548, 585
BmsI GCATC 1 cut(s) 1450
BpuEI CTTGAG 1 cut(s) 1449
BpuMI CCSGG 4 cut(s) 48, 264, 548, 585
BsaAI YACGTR 1 cut(s) 689
BsaHI GRCGYC 1 cut(s) 1140
BsaJI CCNNGG 1 cut(s) 11
BsaWI WCCGGW 2 cut(s) 524, 1099
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 4 cut(s) 222, 553, 554, 962
Bse1I ACTGG 2 cut(s) 717, 879
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 3 cut(s) 1006, 1022, 1465
BseLI CCNNNNNNNGG 4 cut(s) 222, 553, 554, 962
BseNI ACTGG 2 cut(s) 717, 879
BseXI GCAGC 5 cut(s) 341, 623, 715, 755, 1347
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 2 cut(s) 639, 1026
BsiEI CGRYCG 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 7 cut(s) 48, 263, 291, 525, 548, 584, 1100
BslFI GGGAC 3 cut(s) 262, 631, 1127
BslI CCNNNNNNNGG 4 cut(s) 222, 553, 554, 962
BsmAI GTCTC 2 cut(s) 163, 1113
BsmBI CGTCTC 1 cut(s) 1113
BsmFI GGGAC 3 cut(s) 262, 631, 1127
BsmI GAATGC 1 cut(s) 1481
BsnI GGCC 2 cut(s) 639, 1026
Bsp1286I GDGCHC 2 cut(s) 298, 1273
Bsp143I GATC 9 cut(s) 43, 136, 157, 355, 826, 1237, 1297, 1447, 1498
BspACI CCGC 6 cut(s) 228, 635, 662, 980, 1072, 1242
BspANI GGCC 2 cut(s) 639, 1026
BspHI TCATGA 1 cut(s) 195
BspPI GGATC 8 cut(s) 38, 131, 152, 363, 834, 1232, 1442, 1493
BsrBI CCGCTC 1 cut(s) 980
BsrI ACTGG 2 cut(s) 717, 879
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 9 cut(s) 43, 136, 157, 355, 826, 1237, 1297, 1447, 1498
BssNI GRCGYC 1 cut(s) 1140
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 4 cut(s) 31, 709, 1195, 1249
Bst6I CTCTTC 2 cut(s) 853, 1427
BstACI GRCGYC 1 cut(s) 1140
BstBAI YACGTR 1 cut(s) 689
BstC8I GCNNGC 3 cut(s) 448, 637, 1076
BstDEI CTNAG 1 cut(s) 650
BstF5I GGATG 3 cut(s) 1006, 1022, 1465
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 9 cut(s) 46, 139, 160, 358, 829, 1240, 1300, 1450, 1501
BstMAI GTCTC 2 cut(s) 163, 1113
BstMBI GATC 9 cut(s) 43, 136, 157, 355, 826, 1237, 1297, 1447, 1498
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 5 cut(s) 89, 98, 875, 1268, 1373
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 2 cut(s) 1078, 1367
BstSCI CCNGG 5 cut(s) 46, 262, 490, 546, 583
BstSNI TACGTA 1 cut(s) 689
BstV1I GCAGC 5 cut(s) 341, 623, 715, 755, 1347
BstX2I RGATCY 2 cut(s) 355, 1498
BstXI CCANNNNNNTGG 2 cut(s) 1347, 1493
BstYI RGATCY 2 cut(s) 355, 1498
BsuI GTATCC 2 cut(s) 514, 827
BsuRI GGCC 2 cut(s) 639, 1026
BtsCI GGATG 3 cut(s) 1006, 1022, 1465
Cac8I GCNNGC 3 cut(s) 448, 637, 1076
CciI TCATGA 1 cut(s) 195
CfoI GCGC 1 cut(s) 464
Cfr13I GGNCC 3 cut(s) 488, 637, 806
Csp6I GTAC 3 cut(s) 381, 533, 1067
CviAII CATG 5 cut(s) 196, 470, 1075, 1364, 1406
CviQI GTAC 3 cut(s) 381, 533, 1067
DdeI CTNAG 1 cut(s) 650
DpnI GATC 9 cut(s) 45, 138, 159, 357, 828, 1239, 1299, 1449, 1500
DpnII GATC 9 cut(s) 43, 136, 157, 355, 826, 1237, 1297, 1447, 1498
DriI GACNNNNNGTC 1 cut(s) 1520
Eam1104I CTCTTC 2 cut(s) 853, 1427
Eam1105I GACNNNNNGTC 1 cut(s) 1520
EarI CTCTTC 2 cut(s) 853, 1427
EciI GGCGGA 1 cut(s) 651
Eco105I TACGTA 1 cut(s) 689
Eco130I CCWWGG 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 1273
Eco47I GGWCC 2 cut(s) 488, 806
Eco57I CTGAAG 1 cut(s) 1408
EcoRI GAATTC 2 cut(s) 420, 1472
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 11
EcoT22I ATGCAT 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 1273
ErhI CCWWGG 1 cut(s) 11
Esp3I CGTCTC 1 cut(s) 1113
FaeI CATG 5 cut(s) 199, 473, 1078, 1367, 1409
FaqI GGGAC 3 cut(s) 262, 631, 1127
FatI CATG 5 cut(s) 195, 469, 1074, 1363, 1405
FauI CCCGC 3 cut(s) 628, 973, 1249
FblI GTMKAC 1 cut(s) 1113
Fnu4HI GCNGC 6 cut(s) 330, 612, 729, 744, 1072, 1336
FokI GGATG 3 cut(s) 1013, 1029, 1472
FriOI GRGCYC 1 cut(s) 1273
Fsp4HI GCNGC 6 cut(s) 330, 612, 729, 744, 1072, 1336
FspBI CTAG 4 cut(s) 86, 359, 1263, 1413
GlaI GCGC 1 cut(s) 463
GluI GCNGC 6 cut(s) 330, 612, 729, 744, 1072, 1336
HaeIII GGCC 2 cut(s) 639, 1026
HapII CCGG 7 cut(s) 48, 263, 291, 525, 548, 584, 1100
HhaI GCGC 1 cut(s) 464
Hin1I GRCGYC 1 cut(s) 1140
Hin1II CATG 5 cut(s) 199, 473, 1078, 1367, 1409
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HindIII AAGCTT 1 cut(s) 900
HinfI GANTC 3 cut(s) 199, 259, 1160
HpaII CCGG 7 cut(s) 48, 263, 291, 525, 548, 584, 1100
HphI GGTGA 2 cut(s) 1223, 1292
Hpy166II GTNNAC 6 cut(s) 56, 544, 1058, 1114, 1214, 1353
Hpy188I TCNGA 7 cut(s) 145, 508, 898, 977, 1318, 1427, 1526
Hpy188III TCNNGA 6 cut(s) 155, 196, 359, 438, 917, 1451
Hpy8I GTNNAC 6 cut(s) 56, 544, 1058, 1114, 1214, 1353
HpyAV CCTTC 4 cut(s) 275, 402, 1043, 1146
HpyCH4III ACNGT 4 cut(s) 31, 709, 1195, 1249
HpyCH4IV ACGT 6 cut(s) 379, 620, 670, 688, 1140, 1355
HpyCH4V TGCA 4 cut(s) 76, 611, 743, 782
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 98, 875, 1268, 1373
HpyF3I CTNAG 1 cut(s) 650
HpySE526I ACGT 6 cut(s) 379, 620, 670, 688, 1140, 1355
Hsp92I GRCGYC 1 cut(s) 1140
Hsp92II CATG 5 cut(s) 199, 473, 1078, 1367, 1409
HspAI GCGC 1 cut(s) 462
Kzo9I GATC 9 cut(s) 43, 136, 157, 355, 826, 1237, 1297, 1447, 1498
LmnI GCTCC 1 cut(s) 293
Lsp1109I GCAGC 5 cut(s) 341, 623, 715, 755, 1347
LweI GCATC 1 cut(s) 1450
MaeI CTAG 4 cut(s) 86, 359, 1263, 1413
MaeII ACGT 6 cut(s) 379, 620, 670, 688, 1140, 1355
MaeIII GTNAC 3 cut(s) 275, 472, 1189
MalI GATC 9 cut(s) 45, 138, 159, 357, 828, 1239, 1299, 1449, 1500
MbiI CCGCTC 1 cut(s) 980
MboI GATC 9 cut(s) 43, 136, 157, 355, 826, 1237, 1297, 1447, 1498
MboII GAAGA 3 cut(s) 870, 1378, 1414
MfeI CAATTG 1 cut(s) 1274
MflI RGATCY 2 cut(s) 355, 1498
MhlI GDGCHC 2 cut(s) 298, 1273
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 5 cut(s) 168, 212, 531, 994, 1526
MnlI CCTC 7 cut(s) 151, 556, 581, 607, 675, 1337, 1430
Mph1103I ATGCAT 1 cut(s) 78
MroXI GAANNNNTTC 2 cut(s) 391, 1095
MslI CAYNNNNRTG 1 cut(s) 651
MspI CCGG 7 cut(s) 48, 263, 291, 525, 548, 584, 1100
MspR9I CCNGG 5 cut(s) 48, 264, 492, 548, 585
MunI CAATTG 1 cut(s) 1274
Mva1269I GAATGC 1 cut(s) 1481
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 5 cut(s) 89, 98, 875, 1268, 1373
NciI CCSGG 4 cut(s) 48, 264, 548, 585
NdeII GATC 9 cut(s) 43, 136, 157, 355, 826, 1237, 1297, 1447, 1498
NlaIII CATG 5 cut(s) 199, 473, 1078, 1367, 1409
NsiI ATGCAT 1 cut(s) 78
NspI RCATGY 2 cut(s) 1078, 1367
PaeI GCATGC 1 cut(s) 1078
PagI TCATGA 1 cut(s) 195
PctI GAATGC 1 cut(s) 1481
PdmI GAANNNNTTC 2 cut(s) 391, 1095
PfeI GAWTC 2 cut(s) 259, 1160
PflMI CCANNNNNTGG 1 cut(s) 222
PfoI TCCNGGA 2 cut(s) 490, 583
PkrI GCNGC 6 cut(s) 331, 613, 730, 745, 1073, 1337
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspPI GGNCC 3 cut(s) 488, 637, 806
PsrI GAACNNNNNNTAC 2 cut(s) 1050, 1082
PsuI RGATCY 2 cut(s) 355, 1498
RsaI GTAC 3 cut(s) 382, 534, 1068
RsaNI GTAC 3 cut(s) 381, 533, 1067
RseI CAYNNNNRTG 1 cut(s) 651
SatI GCNGC 6 cut(s) 330, 612, 729, 744, 1072, 1336
Sau3AI GATC 9 cut(s) 43, 136, 157, 355, 826, 1237, 1297, 1447, 1498
Sau96I GGNCC 3 cut(s) 488, 637, 806
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 5 cut(s) 48, 264, 492, 548, 585
SduI GDGCHC 2 cut(s) 298, 1273
SfaNI GCATC 1 cut(s) 1450
SinI GGWCC 2 cut(s) 488, 806
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 1 cut(s) 1464
SmoI CTYRAG 1 cut(s) 1464
SnaBI TACGTA 1 cut(s) 689
SphI GCATGC 1 cut(s) 1078
SsiI CCGC 6 cut(s) 228, 635, 662, 980, 1072, 1242
SspI AATATT 2 cut(s) 238, 700
SspMI CTAG 4 cut(s) 86, 359, 1263, 1413
StyD4I CCNGG 5 cut(s) 46, 262, 490, 546, 583
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 4 cut(s) 31, 709, 1195, 1249
TaiI ACGT 6 cut(s) 382, 623, 673, 691, 1143, 1358
TaqI TCGA 4 cut(s) 107, 795, 856, 1176
TauI GCSGC 1 cut(s) 1074
TfiI GAWTC 2 cut(s) 259, 1160
TseI GCWGC 5 cut(s) 329, 611, 728, 743, 1335
TspDTI ATGAA 7 cut(s) 14, 56, 135, 184, 390, 413, 458
TspGWI ACGGA 2 cut(s) 1131, 1137
Van91I CCANNNNNTGG 1 cut(s) 222
VpaK11BI GGWCC 2 cut(s) 488, 806
XapI RAATTY 4 cut(s) 363, 420, 912, 1472
XbaI TCTAGA 1 cut(s) 358
XceI RCATGY 2 cut(s) 1078, 1367
XmiI GTMKAC 1 cut(s) 1113
XmnI GAANNNNTTC 2 cut(s) 391, 1095
XspI CTAG 4 cut(s) 86, 359, 1263, 1413
ZraI GACGTC 1 cut(s) 1141
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.