Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007092

Physical Location & Seq

Genomic Coordinates Reverse (-)

55906 .. 57434

Gene Structure 1529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000220

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGGTTTGCCTTGGTATCGTGTTCATACCGTCGTATTGAATGATCCCGGTCGTTTGATTTCTGTCCATATAATGCATACAGCTCTGGTTGCTGGTTGGGCCGGTTCGATGGCTCTATACGAATTAGCCGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAGGGTATGATTGTATGGTCCTGGAATATGGGTGTCCGATCCTTATGGACTAACCGGAAGGGTACAGGCCGTAAATCCAGCGTGGGGTGTGTGGAGGGTTTTGATCCTTTTGTTCCGGGAGGAATAGCTTCTCATCATATTGCAGCAGGGACCTTAGGTATATTGGCAGGTCTATTTCATCTTAGTGTTCGTCCACCCCAACGCCTATACAAAGGATTACGTATGGGAAATATTGAAACCGTCCTTTCCAGTAGTATTGCTGCTGTCTTTTTTGCAGCTTTTGTAGTTGCTGGAACTATGTGGTATGGTTCAGCAACTACCCCGATTGAATTGTTTGGTCCCACGCGCTATCAATGGGATCAAGGATACTTCCAACAAGAAATATATCGAAGAATTGGTGCTGGCTTAGCCGAAAATCAAAGTTTATCCGAAGCTTGGTCTAAAATTCCTGAAAAACTAGCTTTTTATGATTACATCGGCAATAATCCGGCAAAAGGGGGATTATTCAGAGCGGGCTCAATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACATCCTATCTTTAGAGATAAAGAGGGGCATGAACTTTTTGTACGTCGTATGCCGACGTTTTTTGAAACATTTCCAGTTGTTTTGGTCGACGGGGACGGAATTGTTAGAGCCGATGTTCCTTTTAGAAGGGCAGAATCAAAATATAGTGTCGAACAAGTAGGTGTAACTGTTGAGTTCTATGGCGGCGAACTGAATGGAGTCAGTTATAGCGACCCTGCTACTGTGAAAAAATATGCTAGACGTGCTCAATTGGGTGAAATTTTTGAATTAGACCGTGCTACTTTGAAATCCGATGGTGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACCTTTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTTAGAGATGTTTTTGCTGGTATTGATCCGGATTTAGATGCTCAAGTGGAATTTGGAGCATTCCAAAAACTTGGAGATCCAACTACACGAAGACAGGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010207 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII

Protein Analysis

410

Amino Acids

45.41

Weight (kDa)

7.88

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII	PF00421	1 - 64	4.6e-35	Photosystem II protein
PSII	PF00421	87 - 401	5.5e-162	Photosystem II protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00680
malus_domestica	MD00G1121600.v1.1
prunus_persica	Prupe.7G029800_v2.0.a1
pyrus_communis	pycom05g10070
rosa_chinensis	RchiOBHm_Chr6g0260471 RchiOBHm_CPg0501971
rosa_laevigata	RLG00000000054 RLG00000000070 RLG00000000176 RLG00000000220 RLG00000000266 RLG00000033771 RLG00000037104
rosa_multiflora	Rmu_sc0001010.1_g000065 Rmu_sc0004517.1_g000004
rosa_roxburghii	Rroxscaffold_2G00107490 Rroxscaffold_2G00119020 Rroxscaffold_2G00119180 Rroxscaffold_3G00233680
rosa_rugosa	RorugMtG0002600
rosa_samantha	Rh2CG305200 Rh2DG341500 Rh7AG405500 Rh7CG423100
rosa_wichuraiana	Rw7G013590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	683
AccI	GTMKAC	1 cut(s)	816
AccII	CGCG	1 cut(s)	517
AccIII	TCCGGA	1 cut(s)	1153
AciI	CCGC	2 cut(s)	683, 912
AclWI	GGATC	9 cut(s)	38, 131, 140, 152, 204, 269, 537, 1145, 1196
AcsI	RAATTY	3 cut(s)	615, 987, 1175
AfaI	GTAC	2 cut(s)	235, 771
AfiI	CCNNNNNNNGG	3 cut(s)	255, 606, 665
AgsI	TTSAA	6 cut(s)	40, 407, 500, 794, 995, 1015
AjiI	CACGTC	1 cut(s)	971
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	6 cut(s)	83, 299, 449, 605, 632, 713
AluI	AGCT	6 cut(s)	83, 299, 449, 605, 632, 713
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	9 cut(s)	38, 131, 140, 152, 204, 269, 537, 1145, 1196
Aor13HI	TCCGGA	1 cut(s)	1153
AoxI	GGCC	2 cut(s)	99, 238
ApeKI	GCWGC	3 cut(s)	314, 431, 446
ApoI	RAATTY	3 cut(s)	615, 987, 1175
ArsI	GACNNNNNNTTYG	1 cut(s)	1209
Asp700I	GAANNNNTTC	2 cut(s)	298, 798
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	4 cut(s)	99, 189, 321, 509
AsuC2I	CCSGG	2 cut(s)	48, 288
AsuHPI	GGTGA	1 cut(s)	995
AvaII	GGWCC	3 cut(s)	189, 321, 509
AxyI	CCTNAGG	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	689
BbsI	GAAGAC	1 cut(s)	1222
Bbv12I	GWGCWC	1 cut(s)	976
BbvI	GCAGC	3 cut(s)	326, 418, 458
BccI	CCATC	3 cut(s)	103, 698, 1016
BceAI	ACGGC	2 cut(s)	113, 225
BciT130I	CCWGG	1 cut(s)	193
BciVI	GTATCC	1 cut(s)	530
BcnI	CCSGG	2 cut(s)	48, 288
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	3 cut(s)	629, 966, 1116
BfuAI	ACCTGC	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	530
BisI	GCNGC	4 cut(s)	315, 432, 447, 913
BlpI	GCTNAGC	1 cut(s)	577
BlsI	GCNGC	4 cut(s)	316, 433, 448, 914
Bme1390I	CCNGG	3 cut(s)	48, 193, 288
Bme18I	GGWCC	3 cut(s)	189, 321, 509
BmgBI	CACGTC	1 cut(s)	971
BmgT120I	GGNCC	4 cut(s)	99, 189, 321, 509
BmiI	GGNNCC	2 cut(s)	322, 511
BmrFI	CCNGG	3 cut(s)	48, 193, 288
BmsI	GCATC	1 cut(s)	1153
BpiI	GAAGAC	1 cut(s)	1222
Bpu1102I	GCTNAGC	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	1152
BpuMI	CCSGG	2 cut(s)	48, 288
BsaAI	YACGTR	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	11, 1043
BsaWI	WCCGGW	2 cut(s)	225, 1153
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	3 cut(s)	255, 606, 665
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	420, 803
Bse21I	CCTNAGG	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	1153
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	11, 1043
BseGI	GGATG	2 cut(s)	709, 730
BseLI	CCNNNNNNNGG	3 cut(s)	255, 606, 665
BseNI	ACTGG	2 cut(s)	420, 803
BseXI	GCAGC	3 cut(s)	326, 418, 458
Bsh1236I	CGCG	1 cut(s)	517
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	2 cut(s)	101, 240
BsiEI	CGRYCG	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	976
BsiSI	CCGG	6 cut(s)	48, 102, 226, 287, 659, 1154
BslFI	GGGAC	3 cut(s)	334, 495, 836
BslI	CCNNNNNNNGG	3 cut(s)	255, 606, 665
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	3 cut(s)	334, 495, 836
BsmI	GAATGC	1 cut(s)	1184
BsnI	GGCC	2 cut(s)	101, 240
Bsp1286I	GDGCHC	2 cut(s)	689, 976
Bsp13I	TCCGGA	1 cut(s)	1153
Bsp143I	GATC	9 cut(s)	43, 136, 145, 157, 209, 274, 529, 1150, 1201
Bsp1720I	GCTNAGC	1 cut(s)	577
BspACI	CCGC	2 cut(s)	683, 912
BspANI	GGCC	2 cut(s)	101, 240
BspEI	TCCGGA	1 cut(s)	1153
BspFNI	CGCG	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	322, 511
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	9 cut(s)	38, 131, 140, 152, 204, 269, 537, 1145, 1196
BspQI	GCTCTTC	1 cut(s)	1091
BsrBI	CCGCTC	1 cut(s)	683
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	420, 803
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	11, 1043
BssMI	GATC	9 cut(s)	43, 136, 145, 157, 209, 274, 529, 1150, 1201
BssT1I	CCWWGG	2 cut(s)	11, 1043
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	5 cut(s)	31, 412, 898, 952, 1004
Bst6I	CTCTTC	1 cut(s)	1091
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	574, 685, 1068
BstDEI	CTNAG	3 cut(s)	325, 353, 577
BstF5I	GGATG	2 cut(s)	709, 730
BstFNI	CGCG	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	9 cut(s)	46, 139, 148, 160, 212, 277, 532, 1153, 1204
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	9 cut(s)	43, 136, 145, 157, 209, 274, 529, 1150, 1201
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 98, 578, 971, 1076
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	1070
BstSCI	CCNGG	3 cut(s)	46, 191, 286
BstSNI	TACGTA	1 cut(s)	392
BstUI	CGCG	1 cut(s)	517
BstV1I	GCAGC	3 cut(s)	326, 418, 458
BstV2I	GAAGAC	1 cut(s)	1222
BstX2I	RGATCY	1 cut(s)	1201
BstXI	CCANNNNNNTGG	2 cut(s)	1050, 1196
BstYI	RGATCY	1 cut(s)	1201
Bsu36I	CCTNAGG	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	101, 240
BtrI	CACGTC	1 cut(s)	971
BtsCI	GGATG	2 cut(s)	709, 730
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	3 cut(s)	574, 685, 1068
CfoI	GCGC	1 cut(s)	519
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	4 cut(s)	99, 189, 321, 509
Csp6I	GTAC	2 cut(s)	234, 770
CviAII	CATG	3 cut(s)	758, 1067, 1109
CviQI	GTAC	2 cut(s)	234, 770
DdeI	CTNAG	3 cut(s)	325, 353, 577
DpnI	GATC	9 cut(s)	45, 138, 147, 159, 211, 276, 531, 1152, 1203
DpnII	GATC	9 cut(s)	43, 136, 145, 157, 209, 274, 529, 1150, 1201
Eam1104I	CTCTTC	1 cut(s)	1091
EarI	CTCTTC	1 cut(s)	1091
Eco105I	TACGTA	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	11, 1043
Eco24I	GRGCYC	1 cut(s)	689
Eco47I	GGWCC	3 cut(s)	189, 321, 509
Eco81I	CCTNAGG	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	2 cut(s)	11, 1043
EcoT22I	ATGCAT	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	689
ErhI	CCWWGG	2 cut(s)	11, 1043
FaeI	CATG	3 cut(s)	761, 1070, 1112
FaqI	GGGAC	3 cut(s)	334, 495, 836
FatI	CATG	3 cut(s)	757, 1066, 1108
FauI	CCCGC	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	4 cut(s)	315, 432, 447, 913
FokI	GGATG	2 cut(s)	716, 717
FriOI	GRGCYC	1 cut(s)	689
Fsp4HI	GCNGC	4 cut(s)	315, 432, 447, 913
FspBI	CTAG	3 cut(s)	629, 966, 1116
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	4 cut(s)	315, 432, 447, 913
HaeIII	GGCC	2 cut(s)	101, 240
HapII	CCGG	6 cut(s)	48, 102, 226, 287, 659, 1154
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	3 cut(s)	761, 1070, 1112
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	1 cut(s)	603
HinfI	GANTC	2 cut(s)	863, 927
HpaII	CCGG	6 cut(s)	48, 102, 226, 287, 659, 1154
HphI	GGTGA	1 cut(s)	995
Hpy166II	GTNNAC	3 cut(s)	365, 817, 1056
Hpy188I	TCNGA	6 cut(s)	145, 209, 601, 680, 1021, 1097
Hpy188III	TCNNGA	3 cut(s)	155, 620, 1154
Hpy8I	GTNNAC	3 cut(s)	365, 817, 1056
Hpy99I	CGWCG	4 cut(s)	35, 777, 787, 821
HpyAV	CCTTC	2 cut(s)	223, 849
HpyCH4III	ACNGT	5 cut(s)	31, 412, 898, 952, 1004
HpyCH4IV	ACGT	4 cut(s)	391, 772, 785, 970
HpyCH4V	TGCA	3 cut(s)	76, 314, 446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 98, 578, 971, 1076
HpyF3I	CTNAG	3 cut(s)	325, 353, 577
HpySE526I	ACGT	4 cut(s)	391, 772, 785, 970
Hsp92II	CATG	3 cut(s)	761, 1070, 1112
HspAI	GCGC	1 cut(s)	517
Kpn2I	TCCGGA	1 cut(s)	1153
Kzo9I	GATC	9 cut(s)	43, 136, 145, 157, 209, 274, 529, 1150, 1201
LguI	GCTCTTC	1 cut(s)	1091
LmnI	GCTCC	1 cut(s)	1181
Lsp1109I	GCAGC	3 cut(s)	326, 418, 458
LweI	GCATC	1 cut(s)	1153
MaeI	CTAG	3 cut(s)	629, 966, 1116
MaeII	ACGT	4 cut(s)	391, 772, 785, 970
MaeIII	GTNAC	1 cut(s)	892
MalI	GATC	9 cut(s)	45, 138, 147, 159, 211, 276, 531, 1152, 1203
MbiI	CCGCTC	1 cut(s)	683
MboI	GATC	9 cut(s)	43, 136, 145, 157, 209, 274, 529, 1150, 1201
MboII	GAAGA	5 cut(s)	573, 1078, 1081, 1084, 1227
MfeI	CAATTG	1 cut(s)	977
MflI	RGATCY	1 cut(s)	1201
MhlI	GDGCHC	2 cut(s)	689, 976
MluCI	AATT	9 cut(s)	122, 500, 564, 615, 828, 977, 987, 995, 1175
MlyI	GAGTC	1 cut(s)	936
MmeI	TCCRAC	2 cut(s)	568, 1229
MnlI	CCTC	4 cut(s)	151, 259, 284, 745
Mph1103I	ATGCAT	1 cut(s)	78
MroI	TCCGGA	1 cut(s)	1153
MroXI	GAANNNNTTC	2 cut(s)	298, 798
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	6 cut(s)	48, 102, 226, 287, 659, 1154
MspR9I	CCNGG	3 cut(s)	48, 193, 288
MunI	CAATTG	1 cut(s)	977
Mva1269I	GAATGC	1 cut(s)	1184
MvaI	CCWGG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	517
MwoI	GCNNNNNNNGC	5 cut(s)	89, 98, 578, 971, 1076
NciI	CCSGG	2 cut(s)	48, 288
NdeII	GATC	9 cut(s)	43, 136, 145, 157, 209, 274, 529, 1150, 1201
NlaIII	CATG	3 cut(s)	761, 1070, 1112
NlaIV	GGNNCC	2 cut(s)	322, 511
NsiI	ATGCAT	1 cut(s)	78
NspI	RCATGY	1 cut(s)	1070
PaeI	GCATGC	1 cut(s)	1070
PciSI	GCTCTTC	1 cut(s)	1091
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PctI	GAATGC	1 cut(s)	1184
PdmI	GAANNNNTTC	2 cut(s)	298, 798
PfeI	GAWTC	1 cut(s)	863
PfoI	TCCNGGA	2 cut(s)	191, 286
PkrI	GCNGC	4 cut(s)	316, 433, 448, 914
PleI	GAGTC	1 cut(s)	935
PpsI	GAGTC	1 cut(s)	935
Ppu21I	YACGTR	1 cut(s)	392
PpuMI	RGGWCCY	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	322, 511
PspPI	GGNCC	4 cut(s)	99, 189, 321, 509
PspPPI	RGGWCCY	1 cut(s)	321
PsrI	GAACNNNNNNTAC	2 cut(s)	753, 785
PsuI	RGATCY	1 cut(s)	1201
RsaI	GTAC	2 cut(s)	235, 771
RsaNI	GTAC	2 cut(s)	234, 770
RseI	CAYNNNNRTG	1 cut(s)	354
SalI	GTCGAC	1 cut(s)	815
SapI	GCTCTTC	1 cut(s)	1091
SatI	GCNGC	4 cut(s)	315, 432, 447, 913
Sau3AI	GATC	9 cut(s)	43, 136, 145, 157, 209, 274, 529, 1150, 1201
Sau96I	GGNCC	4 cut(s)	99, 189, 321, 509
SchI	GAGTC	1 cut(s)	936
ScrFI	CCNGG	3 cut(s)	48, 193, 288
SduI	GDGCHC	2 cut(s)	689, 976
SfaNI	GCATC	1 cut(s)	1153
SinI	GGWCC	3 cut(s)	189, 321, 509
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	1167
SmoI	CTYRAG	1 cut(s)	1167
SnaBI	TACGTA	1 cut(s)	392
SphI	GCATGC	1 cut(s)	1070
Sse9I	AATT	9 cut(s)	122, 500, 564, 615, 828, 977, 987, 995, 1175
SsiI	CCGC	2 cut(s)	683, 912
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	3 cut(s)	629, 966, 1116
StyD4I	CCNGG	3 cut(s)	46, 191, 286
StyI	CCWWGG	2 cut(s)	11, 1043
TaaI	ACNGT	5 cut(s)	31, 412, 898, 952, 1004
TaiI	ACGT	4 cut(s)	394, 775, 788, 973
TaqI	TCGA	4 cut(s)	107, 559, 816, 879
TasI	AATT	9 cut(s)	122, 500, 564, 615, 828, 977, 987, 995, 1175
TauI	GCSGC	1 cut(s)	915
TfiI	GAWTC	1 cut(s)	863
TseI	GCWGC	3 cut(s)	314, 431, 446
TspDTI	ATGAA	3 cut(s)	14, 338, 774
TspGWI	ACGGA	1 cut(s)	840
VpaK11BI	GGWCC	3 cut(s)	189, 321, 509
XapI	RAATTY	3 cut(s)	615, 987, 1175
XceI	RCATGY	1 cut(s)	1070
XmiI	GTMKAC	1 cut(s)	816
XmnI	GAANNNNTTC	2 cut(s)	298, 798
XspI	CTAG	3 cut(s)	629, 966, 1116
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.