Rh7CG423100

One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007092
Physical Location & Seq
Reverse (-)
54774891 .. 54775289
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG423100.1

Sequence Viewer

Length: 399 bp
ATGGGTTTGCCTTGGAATCGTGTTCATACCGTCGTATTGAATGATCCCGGTCGTTTGATTTTTGTCCATATAATGCATACAACTCTGGTTGCTGGTTGGGTCGGTTTGATGGCTCTATACGAATTAGCCGTTTTTGATCCCTCTGGTCCTGTTCTTGATCCAATATGGAGACAGGGTATGTTCGTTATACCCTTCATGACTTGTTTAGGAATAACGAATTCATGGGGTGGTTGGAGTATTACAGGGGGGACTGTAACGAATCCGGGTATTTGGAGTTACGAAGGTGTGGCCGAGGCACATATTGTGTTTTCTGGCTTGTGTTTTTTGGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTACTGATGAACATACAGGAAAATTTTCCTAA

Protein Analysis

132

Amino Acids

14.79

Weight (kDa)

5.26

Isoelectric Point (pI)

22.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSII PF00421 1 - 131 2.3e-66 Photosystem II protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 38, 131, 152, 363
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 2 cut(s) 217, 389
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 1 cut(s) 332
AluI AGCT 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 4 cut(s) 38, 131, 152, 363
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 2 cut(s) 217, 389
Asp700I GAANNNNTTC 1 cut(s) 391
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 2 cut(s) 48, 264
AvaII GGWCC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 341
BccI CCATC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 113
BcnI CCSGG 2 cut(s) 48, 264
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 1 cut(s) 359
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme1390I CCNGG 2 cut(s) 48, 264
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmrFI CCNGG 2 cut(s) 48, 264
BpuMI CCSGG 2 cut(s) 48, 264
BsaJI CCNNGG 2 cut(s) 11, 291
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
BseDI CCNNGG 2 cut(s) 11, 291
BseXI GCAGC 1 cut(s) 341
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 290
BsiEI CGRYCG 1 cut(s) 52
BsiSI CCGG 2 cut(s) 48, 263
BslFI GGGAC 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 1 cut(s) 290
Bsp143I GATC 4 cut(s) 43, 136, 157, 355
BspANI GGCC 1 cut(s) 290
BspHI TCATGA 1 cut(s) 195
BspPI GGATC 4 cut(s) 38, 131, 152, 363
BssECI CCNNGG 2 cut(s) 11, 291
BssMI GATC 4 cut(s) 43, 136, 157, 355
BssT1I CCWWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 31, 253
BstKTI GATC 4 cut(s) 46, 139, 160, 358
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 4 cut(s) 43, 136, 157, 355
BstMCI CGRYCG 1 cut(s) 52
BstSCI CCNGG 2 cut(s) 46, 262
BstV1I GCAGC 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 1 cut(s) 290
CciI TCATGA 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 146
CviAII CATG 2 cut(s) 196, 222
CviJI RGCY 5 cut(s) 113, 128, 290, 315, 332
CviKI_1 RGCY 5 cut(s) 113, 128, 290, 315, 332
DpnI GATC 4 cut(s) 45, 138, 159, 357
DpnII GATC 4 cut(s) 43, 136, 157, 355
EaeI YGGCCR 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 11
EcoT22I ATGCAT 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 2 cut(s) 199, 225
FaqI GGGAC 1 cut(s) 262
FatI CATG 2 cut(s) 195, 221
Fnu4HI GCNGC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 1 cut(s) 359
GluI GCNGC 1 cut(s) 330
HaeIII GGCC 1 cut(s) 290
HapII CCGG 2 cut(s) 48, 263
Hin1II CATG 2 cut(s) 199, 225
HinfI GANTC 2 cut(s) 16, 259
HpaII CCGG 2 cut(s) 48, 263
Hpy188III TCNNGA 3 cut(s) 155, 196, 359
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 202, 275
HpyCH4III ACNGT 2 cut(s) 31, 253
HpyCH4V TGCA 1 cut(s) 76
Hsp92II CATG 2 cut(s) 199, 225
Kzo9I GATC 4 cut(s) 43, 136, 157, 355
Lsp1109I GCAGC 1 cut(s) 341
MaeI CTAG 1 cut(s) 359
MaeIII GTNAC 2 cut(s) 253, 275
MalI GATC 4 cut(s) 45, 138, 159, 357
MboI GATC 4 cut(s) 43, 136, 157, 355
MflI RGATCY 1 cut(s) 355
MluCI AATT 3 cut(s) 122, 217, 389
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 2 cut(s) 151, 286
Mph1103I ATGCAT 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 391
MspI CCGG 2 cut(s) 48, 263
MspR9I CCNGG 2 cut(s) 48, 264
NciI CCSGG 2 cut(s) 48, 264
NdeII GATC 4 cut(s) 43, 136, 157, 355
NlaIII CATG 2 cut(s) 199, 225
NmeAIII GCCGAG 1 cut(s) 316
NsiI ATGCAT 1 cut(s) 78
PagI TCATGA 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 16, 259
PkrI GCNGC 1 cut(s) 331
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 355
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 4 cut(s) 43, 136, 157, 355
Sau96I GGNCC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 48, 264
SetI ASST 2 cut(s) 286, 334
SinI GGWCC 1 cut(s) 146
Sse9I AATT 3 cut(s) 122, 217, 389
SspI AATATT 1 cut(s) 366
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 2 cut(s) 46, 262
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 31, 253
TasI AATT 3 cut(s) 122, 217, 389
TfiI GAWTC 2 cut(s) 16, 259
TseI GCWGC 1 cut(s) 329
TspDTI ATGAA 4 cut(s) 14, 184, 210, 390
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 2 cut(s) 217, 389
XbaI TCTAGA 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 391
XspI CTAG 1 cut(s) 359
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.