One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00680 |
| malus_domestica | MD00G1121600.v1.1 |
| prunus_persica | Prupe.7G029800_v2.0.a1 |
| pyrus_communis | pycom05g10070 |
| rosa_chinensis | RchiOBHm_Chr6g0260471 RchiOBHm_CPg0501971 |
| rosa_laevigata | RLG00000000054 RLG00000000070 RLG00000000176 RLG00000000220 RLG00000000266 RLG00000033771 RLG00000037104 |
| rosa_multiflora | Rmu_sc0001010.1_g000065 Rmu_sc0004517.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00107490 Rroxscaffold_2G00119020 Rroxscaffold_2G00119180 Rroxscaffold_3G00233680 |
| rosa_rugosa | RorugMtG0002600 |
| rosa_samantha | Rh2CG305200 Rh2DG341500 Rh7AG405500 Rh7CG423100 |
| rosa_wichuraiana | Rw7G013590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 560 |
| AccBSI | CCGCTC | 1 cut(s) | 914 |
| AccI | GTMKAC | 1 cut(s) | 1047 |
| AccII | CGCG | 1 cut(s) | 748 |
| AccIII | TCCGGA | 1 cut(s) | 1384 |
| AciI | CCGC | 3 cut(s) | 228, 914, 1143 |
| AcsI | RAATTY | 5 cut(s) | 217, 354, 846, 1218, 1406 |
| AfaI | GTAC | 3 cut(s) | 316, 468, 1002 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 488, 837, 896 |
| AgsI | TTSAA | 6 cut(s) | 40, 638, 731, 1025, 1226, 1246 |
| AjiI | CACGTC | 1 cut(s) | 1202 |
| AjnI | CCWGG | 1 cut(s) | 424 |
| AluBI | AGCT | 6 cut(s) | 83, 530, 680, 836, 863, 944 |
| AluI | AGCT | 6 cut(s) | 83, 530, 680, 836, 863, 944 |
| Alw21I | GWGCWC | 1 cut(s) | 1207 |
| Alw26I | GTCTC | 1 cut(s) | 163 |
| Aor13HI | TCCGGA | 1 cut(s) | 1384 |
| AoxI | GGCC | 2 cut(s) | 99, 471 |
| ApeKI | GCWGC | 3 cut(s) | 545, 662, 677 |
| ApoI | RAATTY | 5 cut(s) | 217, 354, 846, 1218, 1406 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 1440 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 529, 1029 |
| AspLEI | GCGC | 1 cut(s) | 750 |
| AspS9I | GGNCC | 4 cut(s) | 99, 422, 552, 740 |
| AsuC2I | CCSGG | 2 cut(s) | 48, 519 |
| AsuHPI | GGTGA | 1 cut(s) | 1226 |
| AvaII | GGWCC | 3 cut(s) | 422, 552, 740 |
| AxyI | CCTNAGG | 1 cut(s) | 556 |
| BanII | GRGCYC | 1 cut(s) | 920 |
| BbsI | GAAGAC | 1 cut(s) | 1453 |
| Bbv12I | GWGCWC | 1 cut(s) | 1207 |
| BbvI | GCAGC | 3 cut(s) | 557, 649, 689 |
| BccI | CCATC | 3 cut(s) | 103, 929, 1247 |
| BceAI | ACGGC | 2 cut(s) | 113, 458 |
| BciT130I | CCWGG | 1 cut(s) | 426 |
| BciVI | GTATCC | 1 cut(s) | 761 |
| BcnI | CCSGG | 2 cut(s) | 48, 519 |
| BcoDI | GTCTC | 1 cut(s) | 163 |
| BfaI | CTAG | 4 cut(s) | 293, 860, 1197, 1347 |
| BfuAI | ACCTGC | 1 cut(s) | 560 |
| BfuI | GTATCC | 1 cut(s) | 761 |
| BglII | AGATCT | 1 cut(s) | 345 |
| BisI | GCNGC | 4 cut(s) | 546, 663, 678, 1144 |
| BlpI | GCTNAGC | 1 cut(s) | 808 |
| BlsI | GCNGC | 4 cut(s) | 547, 664, 679, 1145 |
| Bme1390I | CCNGG | 3 cut(s) | 48, 426, 519 |
| Bme18I | GGWCC | 3 cut(s) | 422, 552, 740 |
| BmgBI | CACGTC | 1 cut(s) | 1202 |
| BmgT120I | GGNCC | 4 cut(s) | 99, 422, 552, 740 |
| BmiI | GGNNCC | 2 cut(s) | 553, 742 |
| BmrFI | CCNGG | 3 cut(s) | 48, 426, 519 |
| BmsI | GCATC | 1 cut(s) | 1384 |
| BpiI | GAAGAC | 1 cut(s) | 1453 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 808 |
| BpuEI | CTTGAG | 1 cut(s) | 1383 |
| BpuMI | CCSGG | 2 cut(s) | 48, 519 |
| BsaAI | YACGTR | 1 cut(s) | 623 |
| BsaJI | CCNNGG | 2 cut(s) | 11, 1274 |
| BsaWI | WCCGGW | 2 cut(s) | 458, 1384 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 160, 190 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 488, 837, 896 |
| Bse118I | RCCGGY | 1 cut(s) | 101 |
| Bse1I | ACTGG | 2 cut(s) | 651, 1034 |
| Bse21I | CCTNAGG | 1 cut(s) | 556 |
| BseAI | TCCGGA | 1 cut(s) | 1384 |
| BseBI | CCWGG | 1 cut(s) | 426 |
| BseDI | CCNNGG | 2 cut(s) | 11, 1274 |
| BseGI | GGATG | 2 cut(s) | 940, 961 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 488, 837, 896 |
| BseMII | CTCAG | 1 cut(s) | 384 |
| BseNI | ACTGG | 2 cut(s) | 651, 1034 |
| BseXI | GCAGC | 3 cut(s) | 557, 649, 689 |
| Bsh1236I | CGCG | 1 cut(s) | 748 |
| Bsh1285I | CGRYCG | 1 cut(s) | 52 |
| BshFI | GGCC | 2 cut(s) | 101, 473 |
| BsiEI | CGRYCG | 1 cut(s) | 52 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1207 |
| BsiSI | CCGG | 7 cut(s) | 48, 102, 263, 459, 518, 890, 1385 |
| BslFI | GGGAC | 4 cut(s) | 262, 565, 726, 1067 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 488, 837, 896 |
| BsmAI | GTCTC | 1 cut(s) | 163 |
| BsmFI | GGGAC | 4 cut(s) | 262, 565, 726, 1067 |
| BsmI | GAATGC | 1 cut(s) | 1415 |
| BsnI | GGCC | 2 cut(s) | 101, 473 |
| Bsp1286I | GDGCHC | 2 cut(s) | 920, 1207 |
| Bsp13I | TCCGGA | 1 cut(s) | 1384 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 808 |
| BspACI | CCGC | 3 cut(s) | 228, 914, 1143 |
| BspANI | GGCC | 2 cut(s) | 101, 473 |
| BspCNI | CTCAG | 1 cut(s) | 383 |
| BspEI | TCCGGA | 1 cut(s) | 1384 |
| BspFNI | CGCG | 1 cut(s) | 748 |
| BspHI | TCATGA | 1 cut(s) | 195 |
| BspLI | GGNNCC | 2 cut(s) | 553, 742 |
| BspMI | ACCTGC | 1 cut(s) | 560 |
| BspQI | GCTCTTC | 1 cut(s) | 1322 |
| BsrBI | CCGCTC | 1 cut(s) | 914 |
| BsrFI | RCCGGY | 1 cut(s) | 101 |
| BsrI | ACTGG | 2 cut(s) | 651, 1034 |
| BssAI | RCCGGY | 1 cut(s) | 101 |
| BssECI | CCNNGG | 2 cut(s) | 11, 1274 |
| BssT1I | CCWWGG | 2 cut(s) | 11, 1274 |
| Bst2UI | CCWGG | 1 cut(s) | 426 |
| Bst4CI | ACNGT | 6 cut(s) | 31, 253, 643, 1129, 1183, 1235 |
| Bst6I | CTCTTC | 1 cut(s) | 1322 |
| BstBAI | YACGTR | 1 cut(s) | 623 |
| BstC8I | GCNNGC | 4 cut(s) | 382, 805, 916, 1299 |
| BstDEI | CTNAG | 5 cut(s) | 342, 370, 556, 584, 808 |
| BstF5I | GGATG | 2 cut(s) | 940, 961 |
| BstFNI | CGCG | 1 cut(s) | 748 |
| BstHHI | GCGC | 1 cut(s) | 750 |
| BstMAI | GTCTC | 1 cut(s) | 163 |
| BstMCI | CGRYCG | 1 cut(s) | 52 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 89, 98, 809, 1202, 1307 |
| BstNI | CCWGG | 1 cut(s) | 426 |
| BstNSI | RCATGY | 1 cut(s) | 1301 |
| BstSCI | CCNGG | 3 cut(s) | 46, 424, 517 |
| BstSNI | TACGTA | 1 cut(s) | 623 |
| BstUI | CGCG | 1 cut(s) | 748 |
| BstV1I | GCAGC | 3 cut(s) | 557, 649, 689 |
| BstV2I | GAAGAC | 1 cut(s) | 1453 |
| BstX2I | RGATCY | 3 cut(s) | 289, 345, 1432 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1281, 1427 |
| BstYI | RGATCY | 3 cut(s) | 289, 345, 1432 |
| Bsu36I | CCTNAGG | 1 cut(s) | 556 |
| BsuI | GTATCC | 1 cut(s) | 761 |
| BsuRI | GGCC | 2 cut(s) | 101, 473 |
| BtrI | CACGTC | 1 cut(s) | 1202 |
| BtsCI | GGATG | 2 cut(s) | 940, 961 |
| BveI | ACCTGC | 1 cut(s) | 560 |
| Cac8I | GCNNGC | 4 cut(s) | 382, 805, 916, 1299 |
| CciI | TCATGA | 1 cut(s) | 195 |
| CfoI | GCGC | 1 cut(s) | 750 |
| Cfr10I | RCCGGY | 1 cut(s) | 101 |
| Cfr13I | GGNCC | 4 cut(s) | 99, 422, 552, 740 |
| Csp6I | GTAC | 3 cut(s) | 315, 467, 1001 |
| CviAII | CATG | 6 cut(s) | 196, 222, 404, 989, 1298, 1340 |
| CviQI | GTAC | 3 cut(s) | 315, 467, 1001 |
| DdeI | CTNAG | 5 cut(s) | 342, 370, 556, 584, 808 |
| Eam1104I | CTCTTC | 1 cut(s) | 1322 |
| EarI | CTCTTC | 1 cut(s) | 1322 |
| Eco105I | TACGTA | 1 cut(s) | 623 |
| Eco130I | CCWWGG | 2 cut(s) | 11, 1274 |
| Eco24I | GRGCYC | 1 cut(s) | 920 |
| Eco47I | GGWCC | 3 cut(s) | 422, 552, 740 |
| Eco81I | CCTNAGG | 1 cut(s) | 556 |
| EcoO109I | RGGNCCY | 1 cut(s) | 552 |
| EcoRI | GAATTC | 2 cut(s) | 217, 354 |
| EcoRII | CCWGG | 1 cut(s) | 424 |
| EcoT14I | CCWWGG | 2 cut(s) | 11, 1274 |
| EcoT22I | ATGCAT | 1 cut(s) | 78 |
| EcoT38I | GRGCYC | 1 cut(s) | 920 |
| ErhI | CCWWGG | 2 cut(s) | 11, 1274 |
| FaeI | CATG | 6 cut(s) | 199, 225, 407, 992, 1301, 1343 |
| FaqI | GGGAC | 4 cut(s) | 262, 565, 726, 1067 |
| FatI | CATG | 6 cut(s) | 195, 221, 403, 988, 1297, 1339 |
| FauI | CCCGC | 1 cut(s) | 907 |
| FblI | GTMKAC | 1 cut(s) | 1047 |
| Fnu4HI | GCNGC | 4 cut(s) | 546, 663, 678, 1144 |
| FokI | GGATG | 2 cut(s) | 947, 948 |
| FriOI | GRGCYC | 1 cut(s) | 920 |
| Fsp4HI | GCNGC | 4 cut(s) | 546, 663, 678, 1144 |
| FspBI | CTAG | 4 cut(s) | 293, 860, 1197, 1347 |
| GlaI | GCGC | 1 cut(s) | 749 |
| GluI | GCNGC | 4 cut(s) | 546, 663, 678, 1144 |
| HaeIII | GGCC | 2 cut(s) | 101, 473 |
| HapII | CCGG | 7 cut(s) | 48, 102, 263, 459, 518, 890, 1385 |
| HhaI | GCGC | 1 cut(s) | 750 |
| Hin1II | CATG | 6 cut(s) | 199, 225, 407, 992, 1301, 1343 |
| Hin6I | GCGC | 1 cut(s) | 748 |
| HinP1I | GCGC | 1 cut(s) | 748 |
| HincII | GTYRAC | 1 cut(s) | 1048 |
| HindII | GTYRAC | 1 cut(s) | 1048 |
| HindIII | AAGCTT | 1 cut(s) | 834 |
| HinfI | GANTC | 4 cut(s) | 199, 259, 1094, 1158 |
| HpaII | CCGG | 7 cut(s) | 48, 102, 263, 459, 518, 890, 1385 |
| HphI | GGTGA | 1 cut(s) | 1226 |
| Hpy166II | GTNNAC | 3 cut(s) | 596, 1048, 1287 |
| Hpy188I | TCNGA | 6 cut(s) | 145, 442, 832, 911, 1252, 1328 |
| Hpy188III | TCNNGA | 5 cut(s) | 155, 196, 293, 851, 1385 |
| Hpy8I | GTNNAC | 3 cut(s) | 596, 1048, 1287 |
| Hpy99I | CGWCG | 4 cut(s) | 35, 1008, 1018, 1052 |
| HpyAV | CCTTC | 3 cut(s) | 202, 456, 1080 |
| HpyCH4III | ACNGT | 6 cut(s) | 31, 253, 643, 1129, 1183, 1235 |
| HpyCH4IV | ACGT | 5 cut(s) | 313, 622, 1003, 1016, 1201 |
| HpyCH4V | TGCA | 4 cut(s) | 76, 398, 545, 677 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 89, 98, 809, 1202, 1307 |
| HpyF3I | CTNAG | 5 cut(s) | 342, 370, 556, 584, 808 |
| HpySE526I | ACGT | 5 cut(s) | 313, 622, 1003, 1016, 1201 |
| Hsp92II | CATG | 6 cut(s) | 199, 225, 407, 992, 1301, 1343 |
| HspAI | GCGC | 1 cut(s) | 748 |
| Kpn2I | TCCGGA | 1 cut(s) | 1384 |
| LguI | GCTCTTC | 1 cut(s) | 1322 |
| LmnI | GCTCC | 1 cut(s) | 1412 |
| Lsp1109I | GCAGC | 3 cut(s) | 557, 649, 689 |
| LweI | GCATC | 1 cut(s) | 1384 |
| MaeI | CTAG | 4 cut(s) | 293, 860, 1197, 1347 |
| MaeII | ACGT | 5 cut(s) | 313, 622, 1003, 1016, 1201 |
| MaeIII | GTNAC | 3 cut(s) | 253, 406, 1123 |
| MbiI | CCGCTC | 1 cut(s) | 914 |
| MboII | GAAGA | 5 cut(s) | 804, 1309, 1312, 1315, 1458 |
| MfeI | CAATTG | 1 cut(s) | 1208 |
| MflI | RGATCY | 3 cut(s) | 289, 345, 1432 |
| MhlI | GDGCHC | 2 cut(s) | 920, 1207 |
| MlyI | GAGTC | 2 cut(s) | 193, 1167 |
| MmeI | TCCRAC | 2 cut(s) | 799, 1460 |
| MnlI | CCTC | 5 cut(s) | 151, 337, 490, 515, 976 |
| Mph1103I | ATGCAT | 1 cut(s) | 78 |
| MroI | TCCGGA | 1 cut(s) | 1384 |
| MroXI | GAANNNNTTC | 2 cut(s) | 529, 1029 |
| MslI | CAYNNNNRTG | 1 cut(s) | 585 |
| MspI | CCGG | 7 cut(s) | 48, 102, 263, 459, 518, 890, 1385 |
| MspR9I | CCNGG | 3 cut(s) | 48, 426, 519 |
| MunI | CAATTG | 1 cut(s) | 1208 |
| Mva1269I | GAATGC | 1 cut(s) | 1415 |
| MvaI | CCWGG | 1 cut(s) | 426 |
| MvnI | CGCG | 1 cut(s) | 748 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 89, 98, 809, 1202, 1307 |
| NciI | CCSGG | 2 cut(s) | 48, 519 |
| NlaIII | CATG | 6 cut(s) | 199, 225, 407, 992, 1301, 1343 |
| NlaIV | GGNNCC | 2 cut(s) | 553, 742 |
| NsiI | ATGCAT | 1 cut(s) | 78 |
| NspI | RCATGY | 1 cut(s) | 1301 |
| PaeI | GCATGC | 1 cut(s) | 1301 |
| PagI | TCATGA | 1 cut(s) | 195 |
| PciSI | GCTCTTC | 1 cut(s) | 1322 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 126 |
| PctI | GAATGC | 1 cut(s) | 1415 |
| PdmI | GAANNNNTTC | 2 cut(s) | 529, 1029 |
| PfeI | GAWTC | 2 cut(s) | 259, 1094 |
| PfoI | TCCNGGA | 2 cut(s) | 424, 517 |
| PkrI | GCNGC | 4 cut(s) | 547, 664, 679, 1145 |
| PleI | GAGTC | 2 cut(s) | 193, 1166 |
| PpsI | GAGTC | 2 cut(s) | 193, 1166 |
| Ppu21I | YACGTR | 1 cut(s) | 623 |
| PpuMI | RGGWCCY | 1 cut(s) | 552 |
| Psp5II | RGGWCCY | 1 cut(s) | 552 |
| Psp6I | CCWGG | 1 cut(s) | 424 |
| PspGI | CCWGG | 1 cut(s) | 424 |
| PspN4I | GGNNCC | 2 cut(s) | 553, 742 |
| PspPI | GGNCC | 4 cut(s) | 99, 422, 552, 740 |
| PspPPI | RGGWCCY | 1 cut(s) | 552 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 984, 1016 |
| PsuI | RGATCY | 3 cut(s) | 289, 345, 1432 |
| RsaI | GTAC | 3 cut(s) | 316, 468, 1002 |
| RsaNI | GTAC | 3 cut(s) | 315, 467, 1001 |
| RseI | CAYNNNNRTG | 1 cut(s) | 585 |
| SalI | GTCGAC | 1 cut(s) | 1046 |
| SapI | GCTCTTC | 1 cut(s) | 1322 |
| SatI | GCNGC | 4 cut(s) | 546, 663, 678, 1144 |
| Sau96I | GGNCC | 4 cut(s) | 99, 422, 552, 740 |
| SchI | GAGTC | 2 cut(s) | 193, 1167 |
| ScrFI | CCNGG | 3 cut(s) | 48, 426, 519 |
| SduI | GDGCHC | 2 cut(s) | 920, 1207 |
| SfaNI | GCATC | 1 cut(s) | 1384 |
| SinI | GGWCC | 3 cut(s) | 422, 552, 740 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 585 |
| SmlI | CTYRAG | 1 cut(s) | 1398 |
| SmoI | CTYRAG | 1 cut(s) | 1398 |
| SnaBI | TACGTA | 1 cut(s) | 623 |
| SphI | GCATGC | 1 cut(s) | 1301 |
| SsiI | CCGC | 3 cut(s) | 228, 914, 1143 |
| SspI | AATATT | 2 cut(s) | 300, 634 |
| SspMI | CTAG | 4 cut(s) | 293, 860, 1197, 1347 |
| StyD4I | CCNGG | 3 cut(s) | 46, 424, 517 |
| StyI | CCWWGG | 2 cut(s) | 11, 1274 |
| TaaI | ACNGT | 6 cut(s) | 31, 253, 643, 1129, 1183, 1235 |
| TaiI | ACGT | 5 cut(s) | 316, 625, 1006, 1019, 1204 |
| TaqI | TCGA | 4 cut(s) | 107, 790, 1047, 1110 |
| TauI | GCSGC | 1 cut(s) | 1146 |
| TfiI | GAWTC | 2 cut(s) | 259, 1094 |
| TseI | GCWGC | 3 cut(s) | 545, 662, 677 |
| TspDTI | ATGAA | 8 cut(s) | 14, 184, 210, 324, 347, 392, 569, 1005 |
| TspGWI | ACGGA | 1 cut(s) | 1071 |
| VpaK11BI | GGWCC | 3 cut(s) | 422, 552, 740 |
| XapI | RAATTY | 5 cut(s) | 217, 354, 846, 1218, 1406 |
| XbaI | TCTAGA | 1 cut(s) | 292 |
| XceI | RCATGY | 1 cut(s) | 1301 |
| XmiI | GTMKAC | 1 cut(s) | 1047 |
| XmnI | GAANNNNTTC | 2 cut(s) | 529, 1029 |
| XspI | CTAG | 4 cut(s) | 293, 860, 1197, 1347 |
| Zsp2I | ATGCAT | 1 cut(s) | 78 |