Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007092

Physical Location & Seq

Genomic Coordinates Reverse (-)

53439606 .. 53439992

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG405500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGTTTGTCTTGGTATCGTGTTCATACCGTCGTATTGAATGATCCCGGTTGTTTGATTTCTGTCCATATAATGCATACAACTCTGGTTGCTGGTTGGGCCGGTTCGATGGCTCTATACGAATTAGCCGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATATGGAGACAGGGTATGTTCGTTATACCCTTCATGACTCATTTAGGAATAACGAATTCATGGGGCGGTTGGAGTATTACAGGGGGGACTGTAACGAATCCGGGTATTTGGAGTTACGAAGGTGTGGCCGGGGCACATATTGTGTTTTCTGGCTTGTGTTTTTTGGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTACTAATGAACGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010207 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII

Protein Analysis

128

Amino Acids

14.28

Weight (kDa)

5.22

Isoelectric Point (pI)

20.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII	PF00421	1 - 128	2.5e-68	Photosystem II protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00680
malus_domestica	MD00G1121600.v1.1
prunus_persica	Prupe.7G029800_v2.0.a1
pyrus_communis	pycom05g10070
rosa_chinensis	RchiOBHm_Chr6g0260471 RchiOBHm_CPg0501971
rosa_laevigata	RLG00000000054 RLG00000000070 RLG00000000176 RLG00000000220 RLG00000000266 RLG00000033771 RLG00000037104
rosa_multiflora	Rmu_sc0001010.1_g000065 Rmu_sc0004517.1_g000004
rosa_roxburghii	Rroxscaffold_2G00107490 Rroxscaffold_2G00119020 Rroxscaffold_2G00119180 Rroxscaffold_3G00233680
rosa_rugosa	RorugMtG0002600
rosa_samantha	Rh2CG305200 Rh2DG341500 Rh7AG405500 Rh7CG423100
rosa_wichuraiana	Rw7G013590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	5 cut(s)	38, 131, 140, 152, 363
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	217
AfaI	GTAC	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	40
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	5 cut(s)	38, 131, 140, 152, 363
AoxI	GGCC	2 cut(s)	99, 288
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	99
AsuC2I	CCSGG	3 cut(s)	48, 264, 292
BaeGI	GKGCMC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	1 cut(s)	113
BcnI	CCSGG	3 cut(s)	48, 264, 292
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	359
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	3 cut(s)	48, 264, 292
BmgT120I	GGNCC	1 cut(s)	99
BmrFI	CCNGG	3 cut(s)	48, 264, 292
BpuMI	CCSGG	3 cut(s)	48, 264, 292
BsaJI	CCNNGG	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bse118I	RCCGGY	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	341
BshFI	GGCC	2 cut(s)	101, 290
BsiSI	CCGG	4 cut(s)	48, 102, 263, 291
BslFI	GGGAC	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	101, 290
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	5 cut(s)	43, 136, 145, 157, 355
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	2 cut(s)	101, 290
BspHI	TCATGA	1 cut(s)	195
BspPI	GGATC	5 cut(s)	38, 131, 140, 152, 363
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	5 cut(s)	43, 136, 145, 157, 355
Bst4CI	ACNGT	2 cut(s)	31, 253
BstKTI	GATC	5 cut(s)	46, 139, 148, 160, 358
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	5 cut(s)	43, 136, 145, 157, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	46, 262, 290
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	101, 290
CciI	TCATGA	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	3 cut(s)	196, 222, 384
CviJI	RGCY	6 cut(s)	101, 113, 128, 290, 315, 332
CviKI_1	RGCY	6 cut(s)	101, 113, 128, 290, 315, 332
CviQI	GTAC	1 cut(s)	381
DpnI	GATC	5 cut(s)	45, 138, 147, 159, 357
DpnII	GATC	5 cut(s)	43, 136, 145, 157, 355
EaeI	YGGCCR	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	78
FaeI	CATG	3 cut(s)	199, 225, 387
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	3 cut(s)	195, 221, 383
Fnu4HI	GCNGC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	101, 290
HapII	CCGG	4 cut(s)	48, 102, 263, 291
Hin1II	CATG	3 cut(s)	199, 225, 387
HinfI	GANTC	2 cut(s)	199, 259
HpaII	CCGG	4 cut(s)	48, 102, 263, 291
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	3 cut(s)	155, 196, 359
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	202, 275
HpyCH4III	ACNGT	2 cut(s)	31, 253
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	3 cut(s)	199, 225, 387
Kzo9I	GATC	5 cut(s)	43, 136, 145, 157, 355
Lsp1109I	GCAGC	1 cut(s)	341
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	2 cut(s)	253, 275
MalI	GATC	5 cut(s)	45, 138, 147, 159, 357
MboI	GATC	5 cut(s)	43, 136, 145, 157, 355
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	2 cut(s)	122, 217
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	1 cut(s)	151
Mph1103I	ATGCAT	1 cut(s)	78
MspI	CCGG	4 cut(s)	48, 102, 263, 291
MspR9I	CCNGG	3 cut(s)	48, 264, 292
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	3 cut(s)	48, 264, 292
NdeII	GATC	5 cut(s)	43, 136, 145, 157, 355
NlaIII	CATG	3 cut(s)	199, 225, 387
NsiI	ATGCAT	1 cut(s)	78
PagI	TCATGA	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	5 cut(s)	43, 136, 145, 157, 355
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	3 cut(s)	48, 264, 292
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	3 cut(s)	286, 334, 382
Sse9I	AATT	2 cut(s)	122, 217
SsiI	CCGC	1 cut(s)	228
SspI	AATATT	1 cut(s)	366
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	3 cut(s)	46, 262, 290
TaaI	ACNGT	2 cut(s)	31, 253
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	107
TasI	AATT	2 cut(s)	122, 217
TfiI	GAWTC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	3 cut(s)	14, 184, 210
XapI	RAATTY	1 cut(s)	217
XbaI	TCTAGA	1 cut(s)	358
XspI	CTAG	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.