Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007092

Physical Location & Seq

Genomic Coordinates Reverse (-)

13407338 .. 13407583

Gene Structure 246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACATCCTATCTTTAGAGATAAAGAGGGGCGCGAACTTTTTGTACGTCATATGCCTACTTTTTTTGAAACATTTCCGGTTGTTTTGGTAGACGAAGACGGAATTGTTAGAGCTGATGTTCCTTTTAGAAGGGCGGAATCTAAATATAGTGTCGAACAAGTAGGTGTAACTGTCGAGTTCTATGGTGGCGAAATTGCAATAGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010207 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII

Protein Analysis

82

Amino Acids

9.12

Weight (kDa)

4.85

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII	PF00421	1 - 77	7.7e-34	Photosystem II protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0007092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00680
malus_domestica	MD00G1121600.v1.1
prunus_persica	Prupe.7G029800_v2.0.a1
pyrus_communis	pycom05g10070
rosa_chinensis	RchiOBHm_Chr6g0260471 RchiOBHm_CPg0501971
rosa_laevigata	RLG00000000054 RLG00000000070 RLG00000000176 RLG00000000220 RLG00000000266 RLG00000033771 RLG00000037104
rosa_multiflora	Rmu_sc0001010.1_g000065 Rmu_sc0004517.1_g000004
rosa_roxburghii	Rroxscaffold_2G00107490 Rroxscaffold_2G00119020 Rroxscaffold_2G00119180 Rroxscaffold_3G00233680
rosa_rugosa	RorugMtG0002600
rosa_samantha	Rh2CG305200 Rh2DG341500 Rh7AG405500 Rh7CG423100
rosa_wichuraiana	Rw7G013590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	69
AciI	CCGC	1 cut(s)	170
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	104
AluBI	AGCT	3 cut(s)	23, 149, 239
AluI	AGCT	3 cut(s)	23, 149, 239
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	138
BccI	CCATC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	112
BseGI	GGATG	2 cut(s)	19, 40
Bsh1236I	CGCG	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	113
BspACI	CCGC	1 cut(s)	170
BspFNI	CGCG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	208
BstF5I	GGATG	2 cut(s)	19, 40
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	69
BstUI	CGCG	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	19, 40
CfoI	GCGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	80
CviJI	RGCY	3 cut(s)	23, 149, 239
CviKI_1	RGCY	3 cut(s)	23, 149, 239
CviQI	GTAC	1 cut(s)	80
EciI	GGCGGA	1 cut(s)	185
FaiI	YATR	4 cut(s)	87, 89, 183, 219
FauNDI	CATATG	1 cut(s)	87
FblI	GTMKAC	1 cut(s)	126
FokI	GGATG	2 cut(s)	26, 27
GlaI	GCGC	1 cut(s)	68
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	1 cut(s)	69
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	82
HspAI	GCGC	1 cut(s)	67
LpnPI	CCDG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	202
MboII	GAAGA	1 cut(s)	143
MluCI	AATT	2 cut(s)	138, 228
MnlI	CCTC	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	108
MspI	CCGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	173
PsrI	GAACNNNNNNTAC	2 cut(s)	63, 95
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SetI	ASST	5 cut(s)	25, 85, 151, 202, 241
SgeI	CNNG	5 cut(s)	22, 80, 125, 206, 223
Sse9I	AATT	2 cut(s)	138, 228
SsiI	CCGC	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	189, 210
TasI	AATT	2 cut(s)	138, 228
TfiI	GAWTC	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.