Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007092

Physical Location & Seq

Genomic Coordinates Reverse (-)

264847 .. 266373

Gene Structure 1527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000266

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGTTTGCCTTGGTATCGTGTTCATACCGTCGTATTGAATGATCCCGGTCGTTTGATTTCTGTCCATATAATGCATACAGCTCTGGTTGCTGGTTGGGCCGGTTCGATGGCTCTATACGAATTAGCCGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAGGGGGTGGCTTGCTTTGGTTTTGGTGCATTTCATGTAACAGGATTGTATGGTCCTGGAATATGGGTGTCCGATCCTTATGGACTAACCGGAAGGGTACAGGCCGTAAATCCAGCGTGGGGTGTGGAGGGTTTTGATCCTTTTGTTCCGGGAGGAATAGCTTCTCATCATATTGCAGCAGGGACCTTAGGTATATTGGCAGGTCTATTTCATCTTAGTGTTCGTCCACCCCAACGCCTATACAAAGGATTACGTATGGGAAATATTGAAACCGTCCTTTCCAGTAGTATTGCTGCTGTCTTTTTTGCAGCTTTTGTAGTTGCTGGAACTATGTGGTATGGTTCAGCAACTACCCCGATTGAATTGTTTGGTCCCACGCGCTATCAATGGGATCAAGGATACTTCCAACAAGAAATATATCGAAGAATTGGTGCTGGCTTAGCCGAAAATCAAAGTTTATCCGAAGCTTGGTCTAAAATTCCTGAAAAACTAGCTTTTTATGATTACATCGGCAATAATCCGGCAAAAGGGGGATTATTCAGAGCGGGCTCAATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACATCCTATCTTTAGAGATAAAGAGGGGCATGAACTTTTTGTACGTCGTATGCCGACGTTTTTTGAAACATTTCCAGTTGTTTTGGTCGACGGGGACGGAATTGTTAGAGCCGATGTTCCTTTTAGAAGGGCAGAATCAAAATATAGTGTCGAACAAGTAGGTGTAACTGTTGAGTTCTATGGCGGCGAACTGAATGGAGTCAGTTATAGCGACCCTGCTACTGTGAAAAAATATGCTAGACGTGCTCAATTGGGTGAAATTTTTGAATTAGACCGTGCTACTTTGAAATCCGATGGTGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACCTTTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTTAGAGATGTTTTTGCTGGTATTGATCCGGATTTAGATGCTCAAGTGGAATTTGGAGCATTCCAAAAACTTGGAGATCCAACTACACGAAGACAGGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010207 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII

Protein Analysis

421

Amino Acids

46.28

Weight (kDa)

6.31

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII	PF00421	1 - 60	1.1e-33	Photosystem II protein
PSII	PF00421	59 - 412	3.2e-185	Photosystem II protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00680
malus_domestica	MD00G1121600.v1.1
prunus_persica	Prupe.7G029800_v2.0.a1
pyrus_communis	pycom05g10070
rosa_chinensis	RchiOBHm_Chr6g0260471 RchiOBHm_CPg0501971
rosa_laevigata	RLG00000000054 RLG00000000070 RLG00000000176 RLG00000000220 RLG00000000266 RLG00000033771 RLG00000037104
rosa_multiflora	Rmu_sc0001010.1_g000065 Rmu_sc0004517.1_g000004
rosa_roxburghii	Rroxscaffold_2G00107490 Rroxscaffold_2G00119020 Rroxscaffold_2G00119180 Rroxscaffold_3G00233680
rosa_rugosa	RorugMtG0002600
rosa_samantha	Rh2CG305200 Rh2DG341500 Rh7AG405500 Rh7CG423100
rosa_wichuraiana	Rw7G013590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	362
AccBSI	CCGCTC	1 cut(s)	716
AccI	GTMKAC	1 cut(s)	849
AccII	CGCG	1 cut(s)	550
AccIII	TCCGGA	1 cut(s)	1186
AciI	CCGC	2 cut(s)	716, 945
AclWI	GGATC	9 cut(s)	38, 131, 140, 152, 239, 302, 570, 1178, 1229
AcsI	RAATTY	3 cut(s)	648, 1020, 1208
AfaI	GTAC	2 cut(s)	270, 804
AfiI	CCNNNNNNNGG	3 cut(s)	290, 639, 698
AgsI	TTSAA	6 cut(s)	40, 440, 533, 827, 1028, 1048
AjiI	CACGTC	1 cut(s)	1004
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	6 cut(s)	83, 332, 482, 638, 665, 746
AluI	AGCT	6 cut(s)	83, 332, 482, 638, 665, 746
Alw21I	GWGCWC	1 cut(s)	1009
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	9 cut(s)	38, 131, 140, 152, 239, 302, 570, 1178, 1229
Aor13HI	TCCGGA	1 cut(s)	1186
AoxI	GGCC	2 cut(s)	99, 273
ApeKI	GCWGC	3 cut(s)	347, 464, 479
ApoI	RAATTY	3 cut(s)	648, 1020, 1208
ArsI	GACNNNNNNTTYG	1 cut(s)	1242
Asp700I	GAANNNNTTC	2 cut(s)	331, 831
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	4 cut(s)	99, 224, 354, 542
AsuC2I	CCSGG	2 cut(s)	48, 321
AsuHPI	GGTGA	1 cut(s)	1028
AvaII	GGWCC	3 cut(s)	224, 354, 542
AxyI	CCTNAGG	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	1255
Bbv12I	GWGCWC	1 cut(s)	1009
BbvI	GCAGC	3 cut(s)	359, 451, 491
BccI	CCATC	3 cut(s)	103, 731, 1049
BceAI	ACGGC	2 cut(s)	113, 260
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	563
BcnI	CCSGG	2 cut(s)	48, 321
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	3 cut(s)	662, 999, 1149
BfuAI	ACCTGC	1 cut(s)	362
BfuI	GTATCC	1 cut(s)	563
BisI	GCNGC	4 cut(s)	348, 465, 480, 946
BlpI	GCTNAGC	1 cut(s)	610
BlsI	GCNGC	4 cut(s)	349, 466, 481, 947
Bme1390I	CCNGG	3 cut(s)	48, 228, 321
Bme18I	GGWCC	3 cut(s)	224, 354, 542
BmgBI	CACGTC	1 cut(s)	1004
BmgT120I	GGNCC	4 cut(s)	99, 224, 354, 542
BmiI	GGNNCC	2 cut(s)	355, 544
BmrFI	CCNGG	3 cut(s)	48, 228, 321
BmsI	GCATC	1 cut(s)	1186
BpiI	GAAGAC	1 cut(s)	1255
Bpu1102I	GCTNAGC	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	1185
BpuMI	CCSGG	2 cut(s)	48, 321
BsaAI	YACGTR	1 cut(s)	425
BsaJI	CCNNGG	2 cut(s)	11, 1076
BsaWI	WCCGGW	2 cut(s)	260, 1186
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 639, 698
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	453, 836
Bse21I	CCTNAGG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	1186
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	11, 1076
BseGI	GGATG	2 cut(s)	742, 763
BseLI	CCNNNNNNNGG	3 cut(s)	290, 639, 698
BseNI	ACTGG	2 cut(s)	453, 836
BseXI	GCAGC	3 cut(s)	359, 451, 491
Bsh1236I	CGCG	1 cut(s)	550
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	2 cut(s)	101, 275
BsiEI	CGRYCG	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	1009
BsiSI	CCGG	6 cut(s)	48, 102, 261, 320, 692, 1187
BslFI	GGGAC	3 cut(s)	367, 528, 869
BslI	CCNNNNNNNGG	3 cut(s)	290, 639, 698
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	3 cut(s)	367, 528, 869
BsmI	GAATGC	1 cut(s)	1217
BsnI	GGCC	2 cut(s)	101, 275
Bsp1286I	GDGCHC	2 cut(s)	722, 1009
Bsp13I	TCCGGA	1 cut(s)	1186
Bsp143I	GATC	9 cut(s)	43, 136, 145, 157, 244, 307, 562, 1183, 1234
Bsp1720I	GCTNAGC	1 cut(s)	610
BspACI	CCGC	2 cut(s)	716, 945
BspANI	GGCC	2 cut(s)	101, 275
BspEI	TCCGGA	1 cut(s)	1186
BspFNI	CGCG	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	355, 544
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	9 cut(s)	38, 131, 140, 152, 239, 302, 570, 1178, 1229
BspQI	GCTCTTC	1 cut(s)	1124
BsrBI	CCGCTC	1 cut(s)	716
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	453, 836
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	11, 1076
BssMI	GATC	9 cut(s)	43, 136, 145, 157, 244, 307, 562, 1183, 1234
BssT1I	CCWWGG	2 cut(s)	11, 1076
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	5 cut(s)	31, 445, 931, 985, 1037
Bst6I	CTCTTC	1 cut(s)	1124
BstBAI	YACGTR	1 cut(s)	425
BstC8I	GCNNGC	4 cut(s)	184, 607, 718, 1101
BstDEI	CTNAG	3 cut(s)	358, 386, 610
BstF5I	GGATG	2 cut(s)	742, 763
BstFNI	CGCG	1 cut(s)	550
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	9 cut(s)	46, 139, 148, 160, 247, 310, 565, 1186, 1237
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	9 cut(s)	43, 136, 145, 157, 244, 307, 562, 1183, 1234
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 98, 611, 1004, 1109
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	1103
BstSCI	CCNGG	3 cut(s)	46, 226, 319
BstSNI	TACGTA	1 cut(s)	425
BstUI	CGCG	1 cut(s)	550
BstV1I	GCAGC	3 cut(s)	359, 451, 491
BstV2I	GAAGAC	1 cut(s)	1255
BstX2I	RGATCY	1 cut(s)	1234
BstXI	CCANNNNNNTGG	2 cut(s)	1083, 1229
BstYI	RGATCY	1 cut(s)	1234
Bsu36I	CCTNAGG	1 cut(s)	358
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	101, 275
BtrI	CACGTC	1 cut(s)	1004
BtsCI	GGATG	2 cut(s)	742, 763
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	4 cut(s)	184, 607, 718, 1101
CfoI	GCGC	1 cut(s)	552
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	4 cut(s)	99, 224, 354, 542
Csp6I	GTAC	2 cut(s)	269, 803
CviAII	CATG	4 cut(s)	206, 791, 1100, 1142
CviQI	GTAC	2 cut(s)	269, 803
DdeI	CTNAG	3 cut(s)	358, 386, 610
DpnI	GATC	9 cut(s)	45, 138, 147, 159, 246, 309, 564, 1185, 1236
DpnII	GATC	9 cut(s)	43, 136, 145, 157, 244, 307, 562, 1183, 1234
Eam1104I	CTCTTC	1 cut(s)	1124
EarI	CTCTTC	1 cut(s)	1124
Eco105I	TACGTA	1 cut(s)	425
Eco130I	CCWWGG	2 cut(s)	11, 1076
Eco24I	GRGCYC	1 cut(s)	722
Eco47I	GGWCC	3 cut(s)	224, 354, 542
Eco81I	CCTNAGG	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	11, 1076
EcoT22I	ATGCAT	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	722
ErhI	CCWWGG	2 cut(s)	11, 1076
FaeI	CATG	4 cut(s)	209, 794, 1103, 1145
FaqI	GGGAC	3 cut(s)	367, 528, 869
FatI	CATG	4 cut(s)	205, 790, 1099, 1141
FauI	CCCGC	1 cut(s)	709
FblI	GTMKAC	1 cut(s)	849
Fnu4HI	GCNGC	4 cut(s)	348, 465, 480, 946
FokI	GGATG	2 cut(s)	749, 750
FriOI	GRGCYC	1 cut(s)	722
Fsp4HI	GCNGC	4 cut(s)	348, 465, 480, 946
FspBI	CTAG	3 cut(s)	662, 999, 1149
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	4 cut(s)	348, 465, 480, 946
HaeIII	GGCC	2 cut(s)	101, 275
HapII	CCGG	6 cut(s)	48, 102, 261, 320, 692, 1187
HhaI	GCGC	1 cut(s)	552
Hin1II	CATG	4 cut(s)	209, 794, 1103, 1145
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	2 cut(s)	896, 960
HpaII	CCGG	6 cut(s)	48, 102, 261, 320, 692, 1187
HphI	GGTGA	1 cut(s)	1028
Hpy166II	GTNNAC	3 cut(s)	398, 850, 1089
Hpy188I	TCNGA	6 cut(s)	145, 244, 634, 713, 1054, 1130
Hpy188III	TCNNGA	3 cut(s)	155, 653, 1187
Hpy8I	GTNNAC	3 cut(s)	398, 850, 1089
Hpy99I	CGWCG	4 cut(s)	35, 810, 820, 854
HpyAV	CCTTC	2 cut(s)	258, 882
HpyCH4III	ACNGT	5 cut(s)	31, 445, 931, 985, 1037
HpyCH4IV	ACGT	4 cut(s)	424, 805, 818, 1003
HpyCH4V	TGCA	4 cut(s)	76, 200, 347, 479
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 98, 611, 1004, 1109
HpyF3I	CTNAG	3 cut(s)	358, 386, 610
HpySE526I	ACGT	4 cut(s)	424, 805, 818, 1003
Hsp92II	CATG	4 cut(s)	209, 794, 1103, 1145
HspAI	GCGC	1 cut(s)	550
Kpn2I	TCCGGA	1 cut(s)	1186
Kzo9I	GATC	9 cut(s)	43, 136, 145, 157, 244, 307, 562, 1183, 1234
LguI	GCTCTTC	1 cut(s)	1124
LmnI	GCTCC	1 cut(s)	1214
Lsp1109I	GCAGC	3 cut(s)	359, 451, 491
LweI	GCATC	1 cut(s)	1186
MaeI	CTAG	3 cut(s)	662, 999, 1149
MaeII	ACGT	4 cut(s)	424, 805, 818, 1003
MaeIII	GTNAC	2 cut(s)	208, 925
MalI	GATC	9 cut(s)	45, 138, 147, 159, 246, 309, 564, 1185, 1236
MbiI	CCGCTC	1 cut(s)	716
MboI	GATC	9 cut(s)	43, 136, 145, 157, 244, 307, 562, 1183, 1234
MboII	GAAGA	5 cut(s)	606, 1111, 1114, 1117, 1260
MfeI	CAATTG	1 cut(s)	1010
MflI	RGATCY	1 cut(s)	1234
MhlI	GDGCHC	2 cut(s)	722, 1009
MluCI	AATT	9 cut(s)	122, 533, 597, 648, 861, 1010, 1020, 1028, 1208
MlyI	GAGTC	1 cut(s)	969
MmeI	TCCRAC	2 cut(s)	601, 1262
MnlI	CCTC	4 cut(s)	151, 292, 317, 778
Mph1103I	ATGCAT	1 cut(s)	78
MroI	TCCGGA	1 cut(s)	1186
MroXI	GAANNNNTTC	2 cut(s)	331, 831
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	6 cut(s)	48, 102, 261, 320, 692, 1187
MspR9I	CCNGG	3 cut(s)	48, 228, 321
MunI	CAATTG	1 cut(s)	1010
Mva1269I	GAATGC	1 cut(s)	1217
MvaI	CCWGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	550
MwoI	GCNNNNNNNGC	5 cut(s)	89, 98, 611, 1004, 1109
NciI	CCSGG	2 cut(s)	48, 321
NdeII	GATC	9 cut(s)	43, 136, 145, 157, 244, 307, 562, 1183, 1234
NlaIII	CATG	4 cut(s)	209, 794, 1103, 1145
NlaIV	GGNNCC	2 cut(s)	355, 544
NsiI	ATGCAT	1 cut(s)	78
NspI	RCATGY	1 cut(s)	1103
PaeI	GCATGC	1 cut(s)	1103
PciSI	GCTCTTC	1 cut(s)	1124
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PctI	GAATGC	1 cut(s)	1217
PdmI	GAANNNNTTC	2 cut(s)	331, 831
PfeI	GAWTC	1 cut(s)	896
PfoI	TCCNGGA	2 cut(s)	226, 319
PkrI	GCNGC	4 cut(s)	349, 466, 481, 947
PleI	GAGTC	1 cut(s)	968
PpsI	GAGTC	1 cut(s)	968
Ppu21I	YACGTR	1 cut(s)	425
PpuMI	RGGWCCY	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	355, 544
PspPI	GGNCC	4 cut(s)	99, 224, 354, 542
PspPPI	RGGWCCY	1 cut(s)	354
PsrI	GAACNNNNNNTAC	2 cut(s)	786, 818
PsuI	RGATCY	1 cut(s)	1234
RsaI	GTAC	2 cut(s)	270, 804
RsaNI	GTAC	2 cut(s)	269, 803
RseI	CAYNNNNRTG	1 cut(s)	387
SalI	GTCGAC	1 cut(s)	848
SapI	GCTCTTC	1 cut(s)	1124
SatI	GCNGC	4 cut(s)	348, 465, 480, 946
Sau3AI	GATC	9 cut(s)	43, 136, 145, 157, 244, 307, 562, 1183, 1234
Sau96I	GGNCC	4 cut(s)	99, 224, 354, 542
SchI	GAGTC	1 cut(s)	969
ScrFI	CCNGG	3 cut(s)	48, 228, 321
SduI	GDGCHC	2 cut(s)	722, 1009
SfaNI	GCATC	1 cut(s)	1186
SinI	GGWCC	3 cut(s)	224, 354, 542
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	1200
SmoI	CTYRAG	1 cut(s)	1200
SnaBI	TACGTA	1 cut(s)	425
SphI	GCATGC	1 cut(s)	1103
Sse9I	AATT	9 cut(s)	122, 533, 597, 648, 861, 1010, 1020, 1028, 1208
SsiI	CCGC	2 cut(s)	716, 945
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	3 cut(s)	662, 999, 1149
StyD4I	CCNGG	3 cut(s)	46, 226, 319
StyI	CCWWGG	2 cut(s)	11, 1076
TaaI	ACNGT	5 cut(s)	31, 445, 931, 985, 1037
TaiI	ACGT	4 cut(s)	427, 808, 821, 1006
TaqI	TCGA	4 cut(s)	107, 592, 849, 912
TasI	AATT	9 cut(s)	122, 533, 597, 648, 861, 1010, 1020, 1028, 1208
TauI	GCSGC	1 cut(s)	948
TfiI	GAWTC	1 cut(s)	896
TseI	GCWGC	3 cut(s)	347, 464, 479
TspDTI	ATGAA	4 cut(s)	14, 194, 371, 807
TspGWI	ACGGA	1 cut(s)	873
VpaK11BI	GGWCC	3 cut(s)	224, 354, 542
XapI	RAATTY	3 cut(s)	648, 1020, 1208
XceI	RCATGY	1 cut(s)	1103
XmiI	GTMKAC	1 cut(s)	849
XmnI	GAANNNNTTC	2 cut(s)	331, 831
XspI	CTAG	3 cut(s)	662, 999, 1149
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.