Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005269

Physical Location & Seq

Genomic Coordinates Forward (+)

139856 .. 140650

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG01230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ACTATCACCCCCAAAAAACCAAACTCTGCTTTACGTAAAGTTGCCAGAGTACGATTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAAATATGGGGTCAAAAAGCCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0019538 GO:0031976 GO:0031984 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

85

Amino Acids

9.37

Weight (kDa)

11.07

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosom_S12_S23	PF00164	1 - 85	5.6e-31	Ribosomal protein S12/S23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00905 ATCG01230
fragaria_vesca	FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_7g21740 FvH4_7g21740 FvH4_c3g00110
malus_domestica	MD05G1172200.v1.1 MD16G1012400.v1.1
prunus_persica	Prupe.6G146800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0201871
rosa_laevigata	RLG00000003645
rosa_multiflora	Rmu_sc0001030.1_g000026
rosa_roxburghii	Rroxscaffold_2G00118950 Rroxscaffold_2G00119170 Rroxscaffold_3G00255040
rosa_rugosa	Rorug07G0066100 Rorug07G0066200 Rorug07G0066300
rosa_samantha	Rh1CG031900 Rh5BG347800 Rh7AG193700 Rh7BG195300 Rh7CG204700 Rh7DG199800
rosa_wichuraiana	Rw7G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	97
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	88
AlwI	GGATC	1 cut(s)	219
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	159
AvaI	CYCGRG	1 cut(s)	61
BalI	TGGCCA	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	120
Bme1390I	CCNGG	2 cut(s)	90, 159
BmeT110I	CYCGRG	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	90, 159
BmsI	GCATC	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	95
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	127
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	88, 157
BstSFI	CTRYAG	1 cut(s)	120
BstSNI	TACGTA	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
CsiI	ACCWGGT	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	50
CviJI	RGCY	2 cut(s)	99, 250
CviKI_1	RGCY	2 cut(s)	99, 250
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	97
Eco105I	TACGTA	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	170
FaiI	YATR	4 cut(s)	84, 86, 102, 237
FspBI	CTAG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	218
HindII	GTYRAC	1 cut(s)	218
HpaII	CCGG	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	34
HpyF3I	CTNAG	1 cut(s)	127
HpySE526I	ACGT	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	211
LpnPI	CCDG	4 cut(s)	58, 75, 102, 172
LweI	GCATC	1 cut(s)	184
MabI	ACCWGGT	1 cut(s)	88
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	34
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	1 cut(s)	103
MluNI	TGGCCA	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	3 cut(s)	70, 128, 176
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	2 cut(s)	56, 147
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	90, 159
MvaI	CCWGG	1 cut(s)	90
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	187
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	56, 147
Sau3AI	GATC	1 cut(s)	211
ScrFI	CCNGG	2 cut(s)	90, 159
SetI	ASST	3 cut(s)	37, 62, 91
SexAI	ACCWGGT	1 cut(s)	88
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	120
SnaBI	TACGTA	1 cut(s)	35
Sse9I	AATT	1 cut(s)	103
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	88, 157
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	181
TasI	AATT	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	56, 147
Tru9I	TTAA	2 cut(s)	56, 147
TscAI	CASTG	1 cut(s)	82
TspRI	CASTG	1 cut(s)	82
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.