Rorug07G0066200

Ribosomal protein S12/S23

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
5036002 .. 5036465
464 bp
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UTR
Exon/CDS
Intron
Rorug07G0066200.1

Sequence Viewer

Length: 243 bp
ATGTCGTCTGGATTTGATATCTTGAAGGGAGCTCCGAAGAAGCTTTTGATTTGTTCTGATCACTCTCTCGTTCATAAAGTCTCCACCTTTTGCATGCAGTTTTGGGCTCACAGTCAAAGCTCCCCTGTTTCTTACAGGCCGTTTCGATCAAAGAGGAATTGTTCTGGAGTGAAGTGCTCTGGGTACTATTTCAGACCGCAATTTTCATGTTCACTGTGTTTCAGGGTTTTGGGTATTTCTTGA

Protein Analysis

80

Amino Acids

9.03

Weight (kDa)

9.7

Isoelectric Point (pI)

61.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 1 cut(s) 25
AluBI AGCT 3 cut(s) 32, 43, 120
AluI AGCT 3 cut(s) 32, 43, 120
Alw21I GWGCWC 2 cut(s) 34, 179
Alw26I GTCTC 1 cut(s) 85
AoxI GGCC 1 cut(s) 137
BanII GRGCYC 2 cut(s) 34, 109
Bbv12I GWGCWC 2 cut(s) 34, 179
BceAI ACGGC 1 cut(s) 124
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 186
BshFI GGCC 1 cut(s) 139
BsiHKAI GWGCWC 2 cut(s) 34, 179
BsmAI GTCTC 1 cut(s) 85
BsnI GGCC 1 cut(s) 139
Bsp1286I GDGCHC 3 cut(s) 34, 109, 179
Bsp143I GATC 2 cut(s) 58, 146
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 139
BssMI GATC 2 cut(s) 58, 146
Bst4CI ACNGT 2 cut(s) 113, 216
BstC8I GCNNGC 1 cut(s) 95
BstKTI GATC 2 cut(s) 61, 149
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 2 cut(s) 58, 146
BstNSI RCATGY 1 cut(s) 97
BsuRI GGCC 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 94, 207
CviJI RGCY 5 cut(s) 32, 43, 107, 120, 139
CviKI_1 RGCY 5 cut(s) 32, 43, 107, 120, 139
CviQI GTAC 1 cut(s) 184
DpnI GATC 2 cut(s) 60, 148
DpnII GATC 2 cut(s) 58, 146
Ecl136II GAGCTC 1 cut(s) 32
Eco24I GRGCYC 2 cut(s) 34, 109
Eco32I GATATC 1 cut(s) 19
Eco53kI GAGCTC 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 32
EcoRV GATATC 1 cut(s) 19
EcoT38I GRGCYC 2 cut(s) 34, 109
FaeI CATG 2 cut(s) 97, 210
FaiI YATR 3 cut(s) 75, 95, 208
FatI CATG 2 cut(s) 93, 206
FbaI TGATCA 1 cut(s) 58
FriOI GRGCYC 2 cut(s) 34, 109
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 139
Hin1II CATG 2 cut(s) 97, 210
HindIII AAGCTT 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 3 cut(s) 36, 58, 194
Hpy188III TCNNGA 4 cut(s) 9, 22, 165, 240
Hpy8I GTNNAC 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 113, 216
HpyCH4V TGCA 2 cut(s) 93, 97
Hsp92II CATG 2 cut(s) 97, 210
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 58, 146
LmnI GCTCC 3 cut(s) 29, 37, 125
LpnPI CCDG 5 cut(s) 121, 138, 150, 165, 208
MalI GATC 2 cut(s) 60, 148
MboI GATC 2 cut(s) 58, 146
MboII GAAGA 1 cut(s) 49
MhlI GDGCHC 3 cut(s) 34, 109, 179
MluCI AATT 2 cut(s) 157, 200
MnlI CCTC 1 cut(s) 147
NdeII GATC 2 cut(s) 58, 146
NlaIII CATG 2 cut(s) 97, 210
NspI RCATGY 1 cut(s) 97
PaeI GCATGC 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 34
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SacI GAGCTC 1 cut(s) 34
Sau3AI GATC 2 cut(s) 58, 146
SduI GDGCHC 3 cut(s) 34, 109, 179
SetI ASST 4 cut(s) 34, 45, 89, 122
SphI GCATGC 1 cut(s) 97
Sse9I AATT 2 cut(s) 157, 200
SsiI CCGC 1 cut(s) 197
SstI GAGCTC 1 cut(s) 34
TaaI ACNGT 2 cut(s) 113, 216
TaqI TCGA 1 cut(s) 145
TasI AATT 2 cut(s) 157, 200
TscAI CASTG 1 cut(s) 219
TspDTI ATGAA 2 cut(s) 62, 195
TspRI CASTG 1 cut(s) 219
XceI RCATGY 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.