Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005269

Physical Location & Seq

Genomic Coordinates Forward (+)

17490016 .. 17493450

Gene Structure 3435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G016920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCCGCTCTGCTGCAACGTGTCTCTCAGCTCGGGGACGCCTTCAGAGCTACGATGGAATCAAAGGATGGTGTTACTGTTGCCAAGGGCATTAGTTATGAGGACAAGTACAAGAATGTGAGCGAGACGCTTACTGCTGGAGGAGATGGTACAACTTTTGCAGCTGTCTTGACCCTGGCAACACTCACAGAAGGTTGCCAGTCCATAGGTGCTGGGGTTCCCTCTATTTTTGCAAATGGTCAACGAGAGATTGGAGAGTGCTTAGCAAGGGCATTGGAGAACGTTGAAAAGAAAGGGCATGTTTCTTCCCTCAAAGATTCTGGTATTGGGGAAAATAGGAGTGGCATTTTAGATTATCTAGCCATCCTCAGGGGGCGAGAGGTTATAAGTGAAGATAACAGTTTCATTATCGACAGACTGCTCATGTCACCCACATTAAATCAATTGATTCGTCATAATAGAACTGAGAAAAGTCGCACAAACCGTAATCGAGCTTTGGATAAATGCCCCCAAAAGCAAGGAGTATGCCTACGGGTTTTTACGAGAACACCCAAGAAGCCAAATTCAGCTCTGCGTAAGGTAGCCAAAGTAAGGCTAAGCAATCGAAATGATGTATTTTCTTACATTCCCGGTGAAGGTCATAATTTGCAGGAACATTCTATGGTCTTAATAAGAGGGGGCAGAGTGAAAGATTTGCCAGGTGTGAAATTCCACTGTATCAGAGGAGTTAAGGATTTGCTGGGACTTCCAAATCGAAGAAGAGGCCGATCAAAATATGGTGCAGAGAAGCCCAAGAGCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

267

Amino Acids

29.29

Weight (kDa)

9.98

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosom_S12_S23	PF00164	161 - 265	6.2e-37	Ribosomal protein S12/S23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00905 ATCG01230
fragaria_vesca	FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_7g21740 FvH4_7g21740 FvH4_c3g00110
malus_domestica	MD05G1172200.v1.1 MD16G1012400.v1.1
prunus_persica	Prupe.6G146800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0201871
rosa_laevigata	RLG00000003645
rosa_multiflora	Rmu_sc0001030.1_g000026
rosa_roxburghii	Rroxscaffold_2G00118950 Rroxscaffold_2G00119170 Rroxscaffold_3G00255040
rosa_rugosa	Rorug07G0066100 Rorug07G0066200 Rorug07G0066300
rosa_samantha	Rh1CG031900 Rh5BG347800 Rh7AG193700 Rh7BG195300 Rh7CG204700 Rh7DG199800
rosa_wichuraiana	Rw7G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
AccBSI	CCGCTC	1 cut(s)	8
AciI	CCGC	1 cut(s)	6
AclI	AACGTT	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	562, 707
AcuI	CTGAAG	1 cut(s)	28
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	110, 151
AfiI	CCNNNNNNNGG	3 cut(s)	369, 591, 635
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	287
AjnI	CCWGG	2 cut(s)	174, 697
AluBI	AGCT	5 cut(s)	31, 50, 164, 494, 569
AluI	AGCT	5 cut(s)	31, 50, 164, 494, 569
Alw26I	GTCTC	2 cut(s)	28, 119
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	2 cut(s)	3, 763
ApeKI	GCWGC	2 cut(s)	13, 161
ApoI	RAATTY	2 cut(s)	562, 707
AspLEI	GCGC	1 cut(s)	800
AsuC2I	CCSGG	1 cut(s)	630
AsuHPI	GGTGA	2 cut(s)	420, 644
AvaI	CYCGRG	1 cut(s)	32
AxyI	CCTNAGG	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	4 cut(s)	49, 62, 140, 371
BciT130I	CCWGG	2 cut(s)	176, 699
BcnI	CCSGG	1 cut(s)	630
BcoDI	GTCTC	2 cut(s)	28, 119
BfaI	CTAG	1 cut(s)	359
BfoI	RGCGCY	1 cut(s)	801
BisI	GCNGC	3 cut(s)	6, 14, 162
BlpI	GCTNAGC	2 cut(s)	262, 596
BlsI	GCNGC	3 cut(s)	7, 15, 163
Bme1390I	CCNGG	3 cut(s)	176, 630, 699
BmeT110I	CYCGRG	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	3 cut(s)	176, 630, 699
BpmI	CTGGAG	1 cut(s)	159
Bpu1102I	GCTNAGC	2 cut(s)	262, 596
BpuMI	CCSGG	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	84, 174
Bsc4I	CCNNNNNNNGG	3 cut(s)	369, 591, 635
Bse1I	ACTGG	1 cut(s)	199
Bse21I	CCTNAGG	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	176, 699
BseDI	CCNNGG	2 cut(s)	84, 174
BseGI	GGATG	2 cut(s)	73, 363
BseLI	CCNNNNNNNGG	3 cut(s)	369, 591, 635
BseMII	CTCAG	3 cut(s)	41, 382, 456
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	156, 738
BseXI	GCAGC	1 cut(s)	173
BseYI	CCCAGC	2 cut(s)	212, 739
BsgI	GTGCAG	1 cut(s)	801
BshFI	GGCC	2 cut(s)	5, 765
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	630
BslFI	GGGAC	2 cut(s)	50, 756
BslI	CCNNNNNNNGG	3 cut(s)	369, 591, 635
BsmAI	GTCTC	2 cut(s)	28, 119
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	50, 756
BsnI	GGCC	2 cut(s)	5, 765
BsoBI	CYCGRG	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	767
Bsp1720I	GCTNAGC	2 cut(s)	262, 596
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	5, 765
BspCNI	CTCAG	3 cut(s)	40, 381, 457
BspLI	GGNNCC	1 cut(s)	219
BsrBI	CCGCTC	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	84, 174
BssMI	GATC	1 cut(s)	767
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	176, 699
Bst4CI	ACNGT	4 cut(s)	79, 401, 485, 716
Bst6I	CTCTTC	1 cut(s)	754
BstACI	GRCGYC	1 cut(s)	39
BstDEI	CTNAG	5 cut(s)	27, 262, 368, 465, 596
BstF5I	GGATG	2 cut(s)	73, 363
BstH2I	RGCGCY	1 cut(s)	801
BstHHI	GCGC	1 cut(s)	800
BstKTI	GATC	1 cut(s)	770
BstMAI	GTCTC	2 cut(s)	28, 119
BstMBI	GATC	1 cut(s)	767
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	2 cut(s)	176, 699
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	3 cut(s)	174, 628, 697
BstV1I	GCAGC	1 cut(s)	173
Bsu36I	CCTNAGG	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	5, 765
BtsCI	GGATG	2 cut(s)	73, 363
BtsIMutI	CAGTG	1 cut(s)	712
CfoI	GCGC	1 cut(s)	800
CseI	GACGC	2 cut(s)	47, 136
Csp6I	GTAC	2 cut(s)	109, 150
CviAII	CATG	2 cut(s)	299, 424
CviQI	GTAC	2 cut(s)	109, 150
DdeI	CTNAG	5 cut(s)	27, 262, 368, 465, 596
DpnI	GATC	1 cut(s)	769
DpnII	GATC	1 cut(s)	767
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	754
EarI	CTCTTC	1 cut(s)	754
Eco130I	CCWWGG	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	28
Eco81I	CCTNAGG	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	174, 697
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	302, 427
FaqI	GGGAC	2 cut(s)	50, 756
FatI	CATG	2 cut(s)	298, 423
Fnu4HI	GCNGC	3 cut(s)	6, 14, 162
FokI	GGATG	2 cut(s)	80, 350
Fsp4HI	GCNGC	3 cut(s)	6, 14, 162
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	799
GluI	GCNGC	3 cut(s)	6, 14, 162
GsaI	CCCAGC	2 cut(s)	216, 743
GsuI	CTGGAG	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	801
HaeIII	GGCC	2 cut(s)	5, 765
HapII	CCGG	1 cut(s)	630
HgaI	GACGC	2 cut(s)	47, 136
HhaI	GCGC	1 cut(s)	800
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	302, 427
Hin6I	GCGC	1 cut(s)	798
HinP1I	GCGC	1 cut(s)	798
HincII	GTYRAC	1 cut(s)	242
HindII	GTYRAC	1 cut(s)	242
HinfI	GANTC	3 cut(s)	59, 317, 448
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	2 cut(s)	420, 644
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	2 cut(s)	47, 722
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	52, 185, 629
HpyCH4III	ACNGT	4 cut(s)	79, 401, 485, 716
HpyCH4IV	ACGT	2 cut(s)	19, 282
HpyCH4V	TGCA	5 cut(s)	16, 161, 233, 649, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	5 cut(s)	27, 262, 368, 465, 596
HpySE526I	ACGT	2 cut(s)	19, 282
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	302, 427
HspAI	GCGC	1 cut(s)	798
Kzo9I	GATC	1 cut(s)	767
Lsp1109I	GCAGC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	2 cut(s)	19, 282
MaeIII	GTNAC	2 cut(s)	73, 426
MalI	GATC	1 cut(s)	769
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	1 cut(s)	767
MboII	GAAGA	4 cut(s)	297, 404, 768, 771
MfeI	CAATTG	1 cut(s)	443
MluCI	AATT	4 cut(s)	443, 562, 643, 707
MnlI	CCTC	9 cut(s)	94, 134, 232, 320, 373, 377, 668, 716, 755
MseI	TTAA	3 cut(s)	437, 668, 729
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	3 cut(s)	176, 630, 699
MunI	CAATTG	1 cut(s)	443
MvaI	CCWGG	2 cut(s)	176, 699
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	630
NdeII	GATC	1 cut(s)	767
NlaIII	CATG	2 cut(s)	302, 427
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	426
NspI	RCATGY	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PfeI	GAWTC	3 cut(s)	59, 317, 448
PkrI	GCNGC	3 cut(s)	7, 15, 163
PsiI	TTATAA	1 cut(s)	386
Psp1406I	AACGTT	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	174, 697
PspFI	CCCAGC	2 cut(s)	212, 739
PspGI	CCWGG	2 cut(s)	174, 697
PspN4I	GGNNCC	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	2 cut(s)	110, 151
RsaNI	GTAC	2 cut(s)	109, 150
SaqAI	TTAA	3 cut(s)	437, 668, 729
SatI	GCNGC	3 cut(s)	6, 14, 162
Sau3AI	GATC	1 cut(s)	767
ScrFI	CCNGG	3 cut(s)	176, 630, 699
Sse9I	AATT	4 cut(s)	443, 562, 643, 707
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	3 cut(s)	174, 628, 697
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	4 cut(s)	79, 401, 485, 716
TaiI	ACGT	2 cut(s)	22, 285
TaqI	TCGA	4 cut(s)	411, 490, 604, 754
TasI	AATT	4 cut(s)	443, 562, 643, 707
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	59, 317, 448
Tru1I	TTAA	3 cut(s)	437, 668, 729
Tru9I	TTAA	3 cut(s)	437, 668, 729
TscAI	CASTG	1 cut(s)	719
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	2 cut(s)	13, 161
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	1 cut(s)	394
TspRI	CASTG	1 cut(s)	719
XapI	RAATTY	2 cut(s)	562, 707
XceI	RCATGY	1 cut(s)	302
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.