Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005269

Physical Location & Seq

Genomic Coordinates Reverse (-)

957085 .. 957252

Gene Structure 168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1012400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGCCTTACGTAAAAGTTGTCAAAGTACGCTTAATCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTCAGTAAGAGGGGAAAGGGTTAAGGATTTACCTTGTGTGAGATATCACAATGTTAGGGAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0019538 GO:0031976 GO:0031984 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

56

Amino Acids

6.29

Weight (kDa)

9.43

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosom_S12_S23	PF00164	5 - 53	1.9e-14	Ribosomal protein S12/S23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00905 ATCG01230
fragaria_vesca	FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_7g21740 FvH4_7g21740 FvH4_c3g00110
malus_domestica	MD05G1172200.v1.1 MD16G1012400.v1.1
prunus_persica	Prupe.6G146800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0201871
rosa_laevigata	RLG00000003645
rosa_multiflora	Rmu_sc0001030.1_g000026
rosa_roxburghii	Rroxscaffold_2G00118950 Rroxscaffold_2G00119170 Rroxscaffold_3G00255040
rosa_rugosa	Rorug07G0066100 Rorug07G0066200 Rorug07G0066300
rosa_samantha	Rh1CG031900 Rh5BG347800 Rh7AG193700 Rh7BG195300 Rh7CG204700 Rh7DG199800
rosa_wichuraiana	Rw7G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	73
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	106
AoxI	GGCC	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	166
BfmI	CTRYAG	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	66
BstBAI	YACGTR	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	96
BstSNI	TACGTA	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
CsiI	ACCWGGT	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	26
CviJI	RGCY	1 cut(s)	75
CviKI_1	RGCY	1 cut(s)	75
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	73
Eco105I	TACGTA	1 cut(s)	10
Eco32I	GATATC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	146
FaiI	YATR	3 cut(s)	60, 62, 78
FspBI	CTAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	75
Hpy188III	TCNNGA	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	9
HpyF3I	CTNAG	1 cut(s)	103
HpySE526I	ACGT	1 cut(s)	9
LpnPI	CCDG	3 cut(s)	24, 51, 78
MabI	ACCWGGT	1 cut(s)	64
MaeI	CTAG	1 cut(s)	166
MaeII	ACGT	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	75
MluCI	AATT	1 cut(s)	79
MluNI	TGGCCA	1 cut(s)	75
MnlI	CCTC	1 cut(s)	104
Mox20I	TGGCCA	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	2 cut(s)	32, 123
Msp20I	TGGCCA	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
NlaIV	GGNNCC	1 cut(s)	162
Ppu21I	YACGTR	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	162
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	32, 123
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	3 cut(s)	12, 67, 136
SexAI	ACCWGGT	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	96
SgeI	CNNG	5 cut(s)	51, 77, 78, 98, 147
SnaBI	TACGTA	1 cut(s)	10
Sse9I	AATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	64
TaiI	ACGT	1 cut(s)	12
TasI	AATT	1 cut(s)	79
Tru1I	TTAA	2 cut(s)	32, 123
Tru9I	TTAA	2 cut(s)	32, 123
TscAI	CASTG	1 cut(s)	58
TspRI	CASTG	1 cut(s)	58
XspI	CTAG	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.